IVF0011822 (gene) Melon (IVF77) v1

Overview


Name	IVF0011822
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr10: 23288985 .. 23290289 (-)
RNA-Seq Expression	IVF0011822
Synteny	IVF0011822

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTGGACTCAGTTTTCTCGTCCTCGGATAAAAAGCGGTCTCCTGACGGTTTCTTCCCTTTGCTTCGTATTGGTGATCAGTCTTTCGATCTTTGGAGATCATGCTCTAAGGACTTTAACCTACACTTCGGGCATGCTCCCTGACATGTTTTCCCACGGTATAGGTCTGGAAGCGAGCTCGTTGAAGGAAGAACTAAGGCGCGACCCAAAACGGTCCAAAAGATGGCCGATGCTTCAAAGATTGGAGAATAGTCGTCCGATGTCAGAAACCACTGAAAATCCAGTTGCAGCGATGGAAAAAAGCTGAATGTCTCAGACTTAGTTTTTTCGTTTGGGGTAAAAAGCAGTCCCCCAACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAATCCTTCGATCTTCGAGGCTCGTACGCCGAAGACTTCAACGCACGCTCTTTGCGTGCTCCCTGACACGTTTTCTCAAGATATAGGTCTGGAAGCGAGCTTGTTAGAGGGAGAACTAAGGCATGGAAAAACGATCCAAACACATGGCCAATGCTTCCAACGAGTGTTGAAGACCCGTCTGGTGCCAGAAACAACTGAAAATGCACTTGCAGCAAAGGAAACGGGTTGGGCTCGAGGACTTCGGGTGTGCGTCCCCAGAAAACTCGAGCGGGAATACCCTAGACTCAGTTTTCTCATCCTAGGATATAAAGCTGTCCCCGACGATTTCTTCCCATTGCTTTTTGTTGGTCATAAGTCTTTCGATCTTTGGGGCTCGTGCGCTGAGGACTTCAACCCACACTCCTAGCATGCTCCCTGACACATTTTCCCAATGTATAGGTCGGGAAGCGAGTTTGTTGGAGGAAGAACTAAGGCGTGAACCAAAACTTTCAAAAAGATGGCCAATGCTTCGAACGAGTGGCGAACACTCGTTCGGTGTCAGAAACCACTGGAAATGTAGTTGCAGCGAAGGAAACGTGCTGAGCTTGAGGACTTCTGATGTGCGTCCCAAGAAAATGCGAGCAAGAATGCCCCGGACCCAATTTTCTCGTCCTCAGTTAAAAAACAGTCCCCCGACGATTTGTTCCCTTTCGATCTTCGGAGCTCGTGCTCTGAGGACTTCAACCCTCATTCTTGGCATTGTCCCTGACAAGTTCTCCGAAGGTATAGCTCTGGAAGCGAGCTTGCTGGAGGGAGAACTAAGGTGCGATCCAAAGCAGTCCCAAAGATGGCCAATGCTTCCAACGAGTGGCGAATGCTTGTCCGGTGTGAGAAACCATTGGAAATGCACTTGCAGCGAACAAAACAGGCTGACCTAA

mRNA sequence

ATGCCCTGGACTCAGTTTTCTCGTCCTCGGATAAAAAGCGGTCTCCTGACGGTTTCTTCCCTTTGCTTCGTATTGGTGATCAGTCTTTCGATCTTTGGAGATCATGCTCTAAGGACTTTAACCTACACTTCGGGCATGCTCCCTGACATGTTTTCCCACGGTATAGGTCTGGAAGCGAGCTCGTTGAAGGAAGAACTAAGGCGCGACCCAAAACGGTCCAAAAGATGGCCGATGCTTCAAAGATTGGAGAATAGTCGTCCGATTCCCCCAACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAATCCTTCGATCTTCGAGGCTCGTACGCCGAAGACTTCAACGCACGCTCTTTGCGTGCTCCCTGACACGTTTTCTCAAGATATAGGTCTGGAAGCGAGCTTGTTAGAGGGAGAACTAAGGCATGGAAAAACGATCCAAACACATGGCCAATGCTTCCAACGAGTGTTGAAGACCCGTCTGGTGCCAGAAACAACTGAAAATGCACTTGCAGCAAAGGAAACGGGTTGGGCTCGAGGACTTCGGGTGTGCGTCCCCAGAAAACTCGAGCGGGAATACCCTAGACTCAGTTTTCTCATCCTAGGATATAAAGCTGTCCCCGACGATTTCTTCCCATTGCTTTTTGTTGGTCGGGAAGCGAGTTTGTTGGAGGAAGAACTAAGGCGTGAACCAAAACTTTCAAAAAGATGGCCAATGCTTCGAACGAGTGGCGAACACTCGTTCGGTGTCAGAAACCACTGGAAATGTAGTTGCAGCGAAGGAAACGTGCTGAGCTTGAGGACTTCTGATGTGCGTCCCAAGAAAATGCGAGCAAGAATGCCCCGGACCCAATTTTCTCGTCCTCAGTTAAAAAACAGTCCCCCGACGATTTGTTCCCTTTCGATCTTCGGAGCTCGTGCTCTGAGGACTTCAACCCTCATTCTTGGCATTGTCCCTGACAAGTTCTCCGAAGGTATAGCTCTGGAAGCGAGCTTGCTGGAGGGAGAACTAAGGTGCGATCCAAAGCAGTCCCAAAGATGGCCAATGCTTCCAACGAGTGGCGAATGCTTGTCCGGTGTGAGAAACCATTGGAAATGCACTTGCAGCGAACAAAACAGGCTGACCTAA

Coding sequence (CDS)

ATGCCCTGGACTCAGTTTTCTCGTCCTCGGATAAAAAGCGGTCTCCTGACGGTTTCTTCCCTTTGCTTCGTATTGGTGATCAGTCTTTCGATCTTTGGAGATCATGCTCTAAGGACTTTAACCTACACTTCGGGCATGCTCCCTGACATGTTTTCCCACGGTATAGGTCTGGAAGCGAGCTCGTTGAAGGAAGAACTAAGGCGCGACCCAAAACGGTCCAAAAGATGGCCGATGCTTCAAAGATTGGAGAATAGTCGTCCGATTCCCCCAACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAATCCTTCGATCTTCGAGGCTCGTACGCCGAAGACTTCAACGCACGCTCTTTGCGTGCTCCCTGACACGTTTTCTCAAGATATAGGTCTGGAAGCGAGCTTGTTAGAGGGAGAACTAAGGCATGGAAAAACGATCCAAACACATGGCCAATGCTTCCAACGAGTGTTGAAGACCCGTCTGGTGCCAGAAACAACTGAAAATGCACTTGCAGCAAAGGAAACGGGTTGGGCTCGAGGACTTCGGGTGTGCGTCCCCAGAAAACTCGAGCGGGAATACCCTAGACTCAGTTTTCTCATCCTAGGATATAAAGCTGTCCCCGACGATTTCTTCCCATTGCTTTTTGTTGGTCGGGAAGCGAGTTTGTTGGAGGAAGAACTAAGGCGTGAACCAAAACTTTCAAAAAGATGGCCAATGCTTCGAACGAGTGGCGAACACTCGTTCGGTGTCAGAAACCACTGGAAATGTAGTTGCAGCGAAGGAAACGTGCTGAGCTTGAGGACTTCTGATGTGCGTCCCAAGAAAATGCGAGCAAGAATGCCCCGGACCCAATTTTCTCGTCCTCAGTTAAAAAACAGTCCCCCGACGATTTGTTCCCTTTCGATCTTCGGAGCTCGTGCTCTGAGGACTTCAACCCTCATTCTTGGCATTGTCCCTGACAAGTTCTCCGAAGGTATAGCTCTGGAAGCGAGCTTGCTGGAGGGAGAACTAAGGTGCGATCCAAAGCAGTCCCAAAGATGGCCAATGCTTCCAACGAGTGGCGAATGCTTGTCCGGTGTGAGAAACCATTGGAAATGCACTTGCAGCGAACAAAACAGGCTGACCTAA

Protein sequence

MPWTQFSRPRIKSGLLTVSSLCFVLVISLSIFGDHALRTLTYTSGMLPDMFSHGIGLEASSLKEELRRDPKRSKRWPMLQRLENSRPIPPTVSSLCFVLVINPSIFEARTPKTSTHALCVLPDTFSQDIGLEASLLEGELRHGKTIQTHGQCFQRVLKTRLVPETTENALAAKETGWARGLRVCVPRKLEREYPRLSFLILGYKAVPDDFFPLLFVGREASLLEEELRREPKLSKRWPMLRTSGEHSFGVRNHWKCSCSEGNVLSLRTSDVRPKKMRARMPRTQFSRPQLKNSPPTICSLSIFGARALRTSTLILGIVPDKFSEGIALEASLLEGELRCDPKQSQRWPMLPTSGECLSGVRNHWKCTCSEQNRLT

Homology

[Close]

BLAST of IVF0011822 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.4e-65
Identity = 185/448 (41.29%), Postives = 229/448 (51.12%), Query Frame = 0


Query: 1    MPWTQFSRPRIKSGLLTVSSLCFVLVISLSIFGDHALRT-----------LTYTSGMLPD 60
            +PWTQFSRP  KSG  TVSSLC VLV   + +  + + T               +  + +
Sbjct: 1196 LPWTQFSRPTAKSGPPTVSSLCSVLVKKRARWRKNCVATQNGLADGQCFQRVANARPVSE 1255

Query: 61   MFSHGIGLEASSLKE-ELRRDPKRSK-RWPMLQRLENSRPI-PPTVSSLCFVLVINPSIF 120
               + +  + + L     R  PK+++ R P  Q         PPT+SSLC VLVI+  IF
Sbjct: 1256 TTENALAAKQNGLTSMTSRARPKKTRARMPRTQFFRPGEKCGPPTISSLCSVLVISLPIF 1315

Query: 121  EARTPKTSTHALCVLPDTFSQDIGLEASLLEGEL----------RHGKTIQTHGQCFQ-- 180
             ART +TSTH   ++ DTF   IG EAS LEGEL             + ++T  +  +  
Sbjct: 1316 RARTLRTSTHTPGMVSDTFFGGIGWEASWLEGELCEVNGLSSKISSARPMKTRARMPRTQ 1375

Query: 181  -----------------------------RVLKTR-----LVP-----ETTENALAAKET 240
                                         R L+T      ++P     ETT NAL   + 
Sbjct: 1376 FSRPGAKSGPPTVSSLCSVLVISLSIFGARTLRTSTHTSGMLPDTFSGETTGNALQRSKR 1435

Query: 241  GWARGLRVCVPRKLEREYPRLSFLILGYKAVPDDFFPLLFVGREASLLEEELRREPKLSK 300
               +  R           P   F  L  K  PD FF LL   REAS LEEEL  + K SK
Sbjct: 1436 PELKDFRCSSQENANEIAPDSIFSSLSKKRSPDVFFSLL--RREASSLEEELWCDLKRSK 1495

Query: 301  RWPMLRTSGEHSFGVRNHWKCSCSEGNVLSLRTSDVRPKKMRARMPRTQFSRPQLKNSPP 360
            RWPM  T+GE S GVRNHWKC+CSEGN L+ RTS   PKK RARMPR+QFSR   K+  P
Sbjct: 1496 RWPMFPTNGERSSGVRNHWKCTCSEGNGLNSRTSGASPKKTRARMPRSQFSRSGAKSDTP 1555

Query: 361  TICS--------LSIFGARALRTSTLILGIVPDKFSEGIALEASLLEGELRCDPKQSQRW 376
            T+ S        LSIF AR  RTST   G++PD FS GI  EAS LEGEL C+PK+S+RW
Sbjct: 1556 TVSSLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQEASSLEGELWCNPKRSKRW 1615

[Close]

BLAST of IVF0011822 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 3.8e-64
Identity = 175/423 (41.37%), Postives = 215/423 (50.83%), Query Frame = 0


Query: 2   PWTQFSRPRIKSGLLTVSSLCFVLVISLSIFGDHALRTLTYTSGMLPDMFSHGIGLEASS 61
           P TQFSRP  ++                        R  T+T GML DMF  GIG +ASS
Sbjct: 276 PRTQFSRPEARTS-----------------------RNSTHTPGMLLDMFCQGIGRDASS 335

Query: 62  LKEELRRDPKRSKRWPMLQ-RLENSRPIPPTVSSLC--------FVLVINPSIFEARTPK 121
           L+ ELR DPKRSKRWPML+ R E S  +     S C            +   I +ARTP+
Sbjct: 336 LQRELRCDPKRSKRWPMLRMRGERSYGVRNHWKSTCNERNRLSSRTFDVRHKITQARTPR 395

Query: 122 TSTHALCVLPDTFSQDIGLEASLLEGELRHGKTIQTHGQCFQRVLKTRLVPETTENALAA 181
           TSTH   +LP+TFSQ IG EASLLEGEL     + +          + + P+  ++  ++
Sbjct: 396 TSTHTPGMLPNTFSQGIGREASLLEGELSKRNRLSSR--------NSGVRPKKMDSVFSS 455

Query: 182 KETGWARGLRVCVPRKLEREYPRLSFLILGYKAVPD-----DFFPLLF---VGREASLLE 241
               W++ +       +      +S LI G           D  P +F   +GREAS LE
Sbjct: 456 WSKTWSQTVSSLYFLLV------ISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLE 515

Query: 242 EELRREPKLSKRWPMLRTSGEHSFGVRNHWKCSCSEGNVLSLRTSDVRPKKMRARMPRTQ 301
            ELR +PK  KRWPML+TSGE S GVRN+WK +CSE N L  RTS+V PKK  ARMP+TQ
Sbjct: 516 GELRCDPKWYKRWPMLQTSGELSSGVRNNWKRTCSERNRLGSRTSNVCPKKTLARMPQTQ 575

Query: 302 FSRPQLKNSPPTICSLSIFGARALRTSTLILGIVPDKFSEGIALEASLLEGELRC----- 361
           F RP                    RT T   G++PD FS+GI  EAS LEGEL+C     
Sbjct: 576 FPRP--------------------RTLTHTPGMLPDTFSQGIGREASSLEGELKCNRKRS 635

Query: 362 ---------------------------DPKQSQRWPMLPTSGECLSGVRNHWKCTCSEQN 376
                                      DPK S+RWPMLPTSGE  SGVRNHWKCTCSE N
Sbjct: 636 NRWPMLPTSGEHSSGRKASSLEGELRYDPKWSKRWPMLPTSGERSSGVRNHWKCTCSEGN 641

[Close]

BLAST of IVF0011822 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.2e-48
Identity = 168/454 (37.00%), Postives = 200/454 (44.05%), Query Frame = 0


Query: 4   TQFSRPRIKSGLLTVSSLCFVLVISLSIFGDHALRTLTYTSGMLPDMF-SHGIGLEASSL 63
           T FSR   KSG  TVSSLC VLVISLSIFG    RT T++   L  +F  +  G E    
Sbjct: 4   TLFSRSGAKSGPPTVSSLCSVLVISLSIFGARPPRTSTHSWHALYYVFWRYRPGSELVEG 63

Query: 64  KEELR-----RDPKRSKRW-------PMLQRLENSRPIPPTVSSLCFVLV-----INPSI 123
           +  +R     +    S  W         L+R  + R         C            S 
Sbjct: 64  RTVVRLKTVQKMANASNEWRTLVWGEKPLERHLHRRKWAELEDFWCSSQENASKNAPDSA 123

Query: 124 FEARTPKTSTHALCVLPDTFSQDIGLEASLLEGELRHGKTIQTHGQCFQRVLKTRLVPET 183
           F +   K S      L  T    +G E       +RH KT+Q                + 
Sbjct: 124 FSSWDKKRSPDGFFPLLRT-GHKLGSELVGGRTVVRH-KTVQKMANASNEWRMLVRCQKP 183

Query: 184 TENALAAKETGWARGLRVCVPRKLEREYPRLSFLILGYKAVPDDFFPLLFVGRE--ASLL 243
            E  L  ++       R      +    P  +F   G K  PD FFPLL +G +  + L+
Sbjct: 184 LEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPDGFFPLLRIGHKSGSELV 243

Query: 244 EEELRREPKLSKRWPMLRTSGEHSFGVRNHWKCSCSEGNVLSLRTSDVRPKKMRARMPRT 303
                   K  +RWPML TSGE S GVRN WKC+C EGN LS RTS  RPKK RARMP+T
Sbjct: 244 GGRTVVRSKTVQRWPMLPTSGERSSGVRNQWKCTCIEGNGLSSRTSGARPKKTRARMPQT 303

Query: 304 QFSRPQLKNSPPTIC--------SLSIFGARALRTST--------------------LIL 363
           QFSRP  K+ PPT+         SLSIFGA   RTST                    L+L
Sbjct: 304 QFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFSERECPRLSFLVL 363

Query: 364 ----------------------------------GIVPDKFSEGIALEASLLEGELRCDP 376
                                             G++PD FS GI  EAS LEGEL CDP
Sbjct: 364 GKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDTFSGGIGREASSLEGELLCDP 423

[Close]

BLAST of IVF0011822 vs. ExPASy TrEMBL
Match: A0A5A7VEB1 (Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00210 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.2e-31
Identity = 132/400 (33.00%), Postives = 178/400 (44.50%), Query Frame = 0


Query: 23   FVLVISLSIFGDHALRTLTYTSGMLPDMFSHGIGLEASSLKEELRRDPKRSKRWPML-QR 82
            F   I  S FG H  RTL Y   ++P  FS  IG EASSL+EELR +PK+SKRWPML QR
Sbjct: 869  FSQTIGTSSFGTHTPRTLVYIPDIVPHPFSQSIGWEASSLEEELRCNPKQSKRWPMLVQR 928

Query: 83   LENSRP------------------IPPTVSSLCFVLVINPSIFEART--PKTSTHALCVL 142
            + N+RP                  +P  V   C    +    FE R   P+T  +   ++
Sbjct: 929  VANARPESASENASDQYFYRRVKSVPTRVCLFC----VGHKRFELRDSYPRTLVYIPGIV 988

Query: 143  PDTFSQDIGLEASLLEGELRHGKTIQTHGQCFQRVL--------KTRLVPETTENALAAK 202
            P  FSQ I L A+ L  E             F +          +T++ PET E    A 
Sbjct: 989  PHPFSQSIALRATGLNSEYFSLYFWHRPSPVFPKYRSRSEIIEGRTKVQPETIEMMANAL 1048

Query: 203  ETGWARGLRVCVPRKLEREYPRLSFLILGYKAVPDDFFPLLFVGREASLLEEELRREPKL 262
             T   R  +    +          FL  G K   ++FF +  V R+   + +      +L
Sbjct: 1049 PTSGERSSQ----KSASENSLHSVFLSRGKKRCCNNFF-VCCVARKRFEIWDSYSEFFRL 1108

Query: 263  SKRWPMLRTSGEHSFG-VRNHWKCSCSEGNVLSLRTSDVRPKKMRARMPRTQFSRPQLKN 322
                 ++  S   S G   + ++   S+GN LS R S V P+K+R RMP TQF    +KN
Sbjct: 1109 HS--GIIPPSSFQSIGREASSFEGEISDGNWLSSRASVVHPRKVRTRMPWTQFFYLGVKN 1168

Query: 323  SPP--------TICSLSIFGARALRTSTLILGIVPDKFSEGIALEASLLEGELRCDPKQS 372
             P          + S S F    LRTS  I GIV   FS+ I  EAS  +GE RC+PK+S
Sbjct: 1169 GPTMVSWFCVVLVISASSFRTHTLRTSVYIPGIVRHSFSQSIGREASSFKGEQRCNPKRS 1228

[Close]

BLAST of IVF0011822 vs. ExPASy TrEMBL
Match: A0A5D3CV18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00790 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.3e-28
Identity = 115/314 (36.62%), Postives = 148/314 (47.13%), Query Frame = 0


Query: 45  GMLP-DMFSHGIGLEASSLKEELRRDPKRSKRWPML-QRLENSRPIPPTVSSLCF----- 104
           G +P   F H  G E S L+EE R + +RSKRWPML Q +  +RP+  T  +        
Sbjct: 33  GRMPRTQFFHRGGRETSLLEEEQRSNSERSKRWPMLFQLVAKARPVSETTKNAVHGRKQA 92

Query: 105 ---VLVINPSIFEARTPKTSTHALCVLPDTFSQDIGLEASLLEGELR-HGKTIQTHGQCF 164
                  + S F+  TP+TS +   ++P  F Q IG EAS LE +LR + +  +     F
Sbjct: 93  KLKDFWSSTSSFKTHTPRTSVYIPGIVPHPFFQSIGREASSLERKLRCNPEQSKKWPMLF 152

Query: 165 QRVLKTRLVPETTENALAAKETGWARGLRVCVPRKLEREYPRLSFLILGYKAVPDDFFPL 224
           QRV  TR +  TTENA                     ++  RLS    G++         
Sbjct: 153 QRVANTRSLSRTTENAF--------------------QQGKRLSSRTSGFR--------- 212

Query: 225 LFVGREASLLEEELRREPKLSKRWPMLRTSGEHSFGVRNHWKCSCS-EGNVLSLRTSDVR 284
               REAS LE ELR  P+ SKRWPML     ++             +GN LS  TS VR
Sbjct: 213 -HKKREASSLERELRCNPERSKRWPMLFHRVVNALQASELIGSGTKLKGNGLSSMTSGVR 272

Query: 285 PKKMRARMPRTQFSRPQLKNSPP--------TICSLSIFGARALRTSTLILGIVPDKFSE 339
           P+K+RARM RTQF    +K+ P          + S S F     RT   I GIVP  FS+
Sbjct: 273 PRKVRARMLRTQFFNHGVKDHPTPDSLFCVLLVKSTSSFRTHTSRTLVYIPGIVPHPFSQ 316

[Close]

BLAST of IVF0011822 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 290 bits (741), Expect = 8.42e-84
Identity = 195/396 (49.24%), Postives = 220/396 (55.56%), Query Frame = 0


Query: 1    MPWTQFSRPRIKSGLLTVSSLCFVLVISLSIFGDHALRTLTYTSGMLPDMFSHGIGLEAS 60
            MP TQF RP  K G  T+SSLC VLVISL IF    LRT T+T GM+ D F  GIG EAS
Sbjct: 1284 MPRTQFFRPGEKCGPPTISSLCSVLVISLPIFRARTLRTSTHTPGMVSDTFFGGIGWEAS 1343

Query: 61   SLKEELRR----DPKRSKRWPM-----LQRLENSRPI----PPTVSSLCFVLVINPSIFE 120
             L+ EL        K S   PM     + R + SRP     PPTVSSLC VLVI+ SIF 
Sbjct: 1344 WLEGELCEVNGLSSKISSARPMKTRARMPRTQFSRPGAKSGPPTVSSLCSVLVISLSIFG 1403

Query: 121  ARTPKTSTHALCVLPDTFSQDIGLEASLLEGELRHGKTIQTHGQCFQRVLKTRLVPETTE 180
            ART +TSTH   +LPDTFS                                     ETT 
Sbjct: 1404 ARTLRTSTHTSGMLPDTFSG------------------------------------ETTG 1463

Query: 181  NALAAKETGWARGLRVCVPRKLEREYPRLSFLILGYKAVPDDFFPLLFVGREASLLEEEL 240
            NAL   +    +  R           P   F  L  K  PD FF LL   REAS LEEEL
Sbjct: 1464 NALQRSKRPELKDFRCSSQENANEIAPDSIFSSLSKKRSPDVFFSLL--RREASSLEEEL 1523

Query: 241  RREPKLSKRWPMLRTSGEHSFGVRNHWKCSCSEGNVLSLRTSDVRPKKMRARMPRTQFSR 300
              + K SKRWPM  T+GE S GVRNHWKC+CSEGN L+ RTS   PKK RARMPR+QFSR
Sbjct: 1524 WCDLKRSKRWPMFPTNGERSSGVRNHWKCTCSEGNGLNSRTSGASPKKTRARMPRSQFSR 1583

Query: 301  PQLKNSPPTICSL--------SIFGARALRTSTLILGIVPDKFSEGIALEASLLEGELRC 360
               K+  PT+ SL        SIF AR  RTST   G++PD FS GI  EAS LEGEL C
Sbjct: 1584 SGAKSDTPTVSSLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQEASSLEGELWC 1641

Query: 361  DPKQSQRWPMLPTSGECLSGVRNHWKCTCSEQNRLT 375
            +PK+S+RW MLPTS E  SG+RNH KCT  E N L+
Sbjct: 1644 NPKRSKRWTMLPTSVERSSGIRNHLKCTRCEGNGLS 1641

[Close]

BLAST of IVF0011822 vs. NCBI nr
Match: TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 254 bits (649), Expect = 1.03e-73
Identity = 175/423 (41.37%), Postives = 214/423 (50.59%), Query Frame = 0


Query: 2   PWTQFSRPRIKSGLLTVSSLCFVLVISLSIFGDHALRTLTYTSGMLPDMFSHGIGLEASS 61
           P TQFSRP  ++                        R  T+T GML DMF  GIG +ASS
Sbjct: 276 PRTQFSRPEARTS-----------------------RNSTHTPGMLLDMFCQGIGRDASS 335

Query: 62  LKEELRRDPKRSKRWPMLQ-RLENSRPIPPTVSSLCF--------VLVINPSIFEARTPK 121
           L+ ELR DPKRSKRWPML+ R E S  +     S C            +   I +ARTP+
Sbjct: 336 LQRELRCDPKRSKRWPMLRMRGERSYGVRNHWKSTCNERNRLSSRTFDVRHKITQARTPR 395

Query: 122 TSTHALCVLPDTFSQDIGLEASLLEGELRHGKTIQTHGQCFQRVLKTRLVPETTENALAA 181
           TSTH   +LP+TFSQ IG EASLLEGEL     + +     +        P+  ++  ++
Sbjct: 396 TSTHTPGMLPNTFSQGIGREASLLEGELSKRNRLSSRNSGVR--------PKKMDSVFSS 455

Query: 182 KETGWARGLRVCVPRKLEREYPRLSFLILGYKAVPD-----DFFPLLF---VGREASLLE 241
               W++ +       +      +S LI G           D  P +F   +GREAS LE
Sbjct: 456 WSKTWSQTVSSLYFLLV------ISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLE 515

Query: 242 EELRREPKLSKRWPMLRTSGEHSFGVRNHWKCSCSEGNVLSLRTSDVRPKKMRARMPRTQ 301
            ELR +PK  KRWPML+TSGE S GVRN+WK +CSE N L  RTS+V PKK  ARMP+TQ
Sbjct: 516 GELRCDPKWYKRWPMLQTSGELSSGVRNNWKRTCSERNRLGSRTSNVCPKKTLARMPQTQ 575

Query: 302 FSRPQLKNSPPTICSLSIFGARALRTSTLILGIVPDKFSEGIALEASLLEGELRC----- 361
           F RP                    RT T   G++PD FS+GI  EAS LEGEL+C     
Sbjct: 576 FPRP--------------------RTLTHTPGMLPDTFSQGIGREASSLEGELKCNRKRS 635

Query: 362 ---------------------------DPKQSQRWPMLPTSGECLSGVRNHWKCTCSEQN 375
                                      DPK S+RWPMLPTSGE  SGVRNHWKCTCSE N
Sbjct: 636 NRWPMLPTSGEHSSGRKASSLEGELRYDPKWSKRWPMLPTSGERSSGVRNHWKCTCSEGN 641

[Close]

BLAST of IVF0011822 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (509), Expect = 1.74e-54
Identity = 165/456 (36.18%), Postives = 201/456 (44.08%), Query Frame = 0


Query: 4   TQFSRPRIKSGLLTVSSLCFVLVISLSIFGDHALRTLTYTSGMLPDMF-SHGIGLEASSL 63
           T FSR   KSG  TVSSLC VLVISLSIFG    RT T++   L  +F  +  G E    
Sbjct: 4   TLFSRSGAKSGPPTVSSLCSVLVISLSIFGARPPRTSTHSWHALYYVFWRYRPGSELVEG 63

Query: 64  KEELR-----RDPKRSKRWPMLQRLENSRPIPPTVSSLCFVLVIN--------------P 123
           +  +R     +    S  W  L  +   +P+   +    +  + +               
Sbjct: 64  RTVVRLKTVQKMANASNEWRTL--VWGEKPLERHLHRRKWAELEDFWCSSQENASKNAPD 123

Query: 124 SIFEARTPKTSTHALCVLPDTFSQDIGLEASLLEGELRHGKTIQTHGQCFQRVLKTRLVP 183
           S F +   K S      L  T    +G E       +RH KT+Q                
Sbjct: 124 SAFSSWDKKRSPDGFFPLLRT-GHKLGSELVGGRTVVRH-KTVQKMANASNEWRMLVRCQ 183

Query: 184 ETTENALAAKETGWARGLRVCVPRKLEREYPRLSFLILGYKAVPDDFFPLLFVGREAS-- 243
           +  E  L  ++       R      +    P  +F   G K  PD FFPLL +G ++   
Sbjct: 184 KPLEMHLQRRKRVELEDFRCSSQENVSENAPDSAFSSWGKKRSPDGFFPLLRIGHKSGSE 243

Query: 244 LLEEELRREPKLSKRWPMLRTSGEHSFGVRNHWKCSCSEGNVLSLRTSDVRPKKMRARMP 303
           L+        K  +RWPML TSGE S GVRN WKC+C EGN LS RTS  RPKK RARMP
Sbjct: 244 LVGGRTVVRSKTVQRWPMLPTSGERSSGVRNQWKCTCIEGNGLSSRTSGARPKKTRARMP 303

Query: 304 RTQFSRPQLKNSPPTIC--------SLSIFGARALRTSTLILGIVPDKFSE--------- 363
           +TQFSRP  K+ PPT+         SLSIFGA   RTST   G++PD FSE         
Sbjct: 304 QTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFSERECPRLSFL 363

Query: 364 ---------------------------------------------GIALEASLLEGELRC 375
                                                        GI  EAS LEGEL C
Sbjct: 364 VLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDTFSGGIGREASSLEGELLC 423

[Close]

BLAST of IVF0011822 vs. NCBI nr
Match: KAA0065520.1 (retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (360), Expect = 3.50e-33
Identity = 132/400 (33.00%), Postives = 178/400 (44.50%), Query Frame = 0


Query: 23   FVLVISLSIFGDHALRTLTYTSGMLPDMFSHGIGLEASSLKEELRRDPKRSKRWPML-QR 82
            F   I  S FG H  RTL Y   ++P  FS  IG EASSL+EELR +PK+SKRWPML QR
Sbjct: 869  FSQTIGTSSFGTHTPRTLVYIPDIVPHPFSQSIGWEASSLEEELRCNPKQSKRWPMLVQR 928

Query: 83   LENSRP------------------IPPTVSSLCFVLVINPSIFEART--PKTSTHALCVL 142
            + N+RP                  +P  V   C    +    FE R   P+T  +   ++
Sbjct: 929  VANARPESASENASDQYFYRRVKSVPTRVCLFC----VGHKRFELRDSYPRTLVYIPGIV 988

Query: 143  PDTFSQDIGLEASLLEGELRHGKTIQTHGQCFQRVL--------KTRLVPETTENALAAK 202
            P  FSQ I L A+ L  E             F +          +T++ PET E    A 
Sbjct: 989  PHPFSQSIALRATGLNSEYFSLYFWHRPSPVFPKYRSRSEIIEGRTKVQPETIEMMANAL 1048

Query: 203  ETGWARGLRVCVPRKLEREYPRLSFLILGYKAVPDDFFPLLFVGREASLLEEELRREPKL 262
             T   R  +    +          FL  G K   ++FF +  V R+   + +      +L
Sbjct: 1049 PTSGERSSQ----KSASENSLHSVFLSRGKKRCCNNFF-VCCVARKRFEIWDSYSEFFRL 1108

Query: 263  SKRWPMLRTSGEHSFGVR-NHWKCSCSEGNVLSLRTSDVRPKKMRARMPRTQFSRPQLKN 322
                 ++  S   S G   + ++   S+GN LS R S V P+K+R RMP TQF    +KN
Sbjct: 1109 HS--GIIPPSSFQSIGREASSFEGEISDGNWLSSRASVVHPRKVRTRMPWTQFFYLGVKN 1168

Query: 323  SPPTIC--------SLSIFGARALRTSTLILGIVPDKFSEGIALEASLLEGELRCDPKQS 371
             P  +         S S F    LRTS  I GIV   FS+ I  EAS  +GE RC+PK+S
Sbjct: 1169 GPTMVSWFCVVLVISASSFRTHTLRTSVYIPGIVRHSFSQSIGREASSFKGEQRCNPKRS 1228

[Close]

BLAST of IVF0011822 vs. NCBI nr
Match: KAA0047414.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (336), Expect = 1.89e-30
Identity = 117/319 (36.68%), Postives = 147/319 (46.08%), Query Frame = 0


Query: 45  GMLP-DMFSHGIGLEASSLKEELRRDPKRSKRWPML-QRLENSRPIPPTVSSLCFV---- 104
           G +P   F H  G E S L+EE R + +RSKRWPML Q +  +RP+  T  +        
Sbjct: 33  GRMPRTQFFHRGGRETSLLEEEQRSNSERSKRWPMLFQLVAKARPVSETTKNAVHGRKQA 92

Query: 105 ----LVINPSIFEARTPKTSTHALCVLPDTFSQDIGLEASLLEGELR-HGKTIQTHGQCF 164
                  + S F+  TP+TS +   ++P  F Q IG EAS LE +LR + +  +     F
Sbjct: 93  KLKDFWSSTSSFKTHTPRTSVYIPGIVPHPFFQSIGREASSLERKLRCNPEQSKKWPMLF 152

Query: 165 QRVLKTRLVPETTENALAAKETGWARGLRVCVPRKLEREYPRLSFLILGYKAVPDDFFPL 224
           QRV  TR +  TTENA                     ++  RLS    G++         
Sbjct: 153 QRVANTRSLSRTTENAF--------------------QQGKRLSSRTSGFR--------- 212

Query: 225 LFVGREASLLEEELRREPKLSKRWPML------RTSGEHSFGVRNHWKCSCSEGNVLSLR 284
               REAS LE ELR  P+ SKRWPML              G     K     GN LS  
Sbjct: 213 -HKKREASSLERELRCNPERSKRWPMLFHRVVNALQASELIGSGTKLK-----GNGLSSM 272

Query: 285 TSDVRPKKMRARMPRTQFSRPQLKNSPPT--------ICSLSIFGARALRTSTLILGIVP 338
           TS VRP+K+RARM RTQF    +K+ P          + S S F     RT   I GIVP
Sbjct: 273 TSGVRPRKVRARMLRTQFFNHGVKDHPTPDSLFCVLLVKSTSSFRTHTSRTLVYIPGIVP 316

The following BLAST results are available for this feature:

BLAST of IVF0011822 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011822 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5J2	4.4e-65	41.29	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3DIF8	3.8e-64	41.37	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010...	[more]
A0A5D3DFP2	2.2e-48	37.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VEB1	4.2e-31	33.00	Retrotransposon protein, putative, Ty3-gypsy subclass, expressed OS=Cucumis melo...	[more]
A0A5D3CV18	3.3e-28	36.62	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0079...	[more]

BLAST of IVF0011822 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062888.1	8.42e-84	49.24	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
TYK23424.1	1.03e-73	41.37	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK22521.1	1.74e-54	36.18	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
KAA0065520.1	3.50e-33	33.00	retrotransposon protein, putative, Ty3-gypsy subclass, expressed [Cucumis melo v...	[more]
KAA0047414.1	1.89e-30	36.68	gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis ...	[more]

BLAST of IVF0011822 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 271..292

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011822.1	IVF0011822.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity