IVF0011614 (gene) Melon (IVF77) v1

Overview
NameIVF0011614
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pro-like protein
Locationchr05: 6943697 .. 6944038 (+)
RNA-Seq ExpressionIVF0011614
SyntenyIVF0011614
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACGCTTTTCCAAATCCTCCATGGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGATAGAGAGAAGATTGGATGCACCAACAAGGAGCAGTGCTTATTCCATCCAGAGACAAATGACCATTTCATTGAGGACTGTTGTGAGTTCAAGAATAAGGTGCAAAAGCTGATGGACGCAAAGATTCTCTTGATAGGACAGATGAGCATGCAGGAAATCAAGGTTAATATGATCACTAATGCTTCATCTAATGAGAAAACTTCAAATGAGACGACATCTATGTGGAAACAATTAGTCATTCATTACGAAGAGAAGCCAAGTATTATGTCTTATATCTAA

mRNA sequence

ATGAAAACGCTTTTCCAAATCCTCCATGGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGATAGAGAGAAGATTGGATGCACCAACAAGGAGCAGTGCTTATTCCATCCAGAGACAAATGACCATTTCATTGAGGACTGTTGTGAGTTCAAGAATAAGGTGCAAAAGCTGATGGACGCAAAGATTCTCTTGATAGGACAGATGAGCATGCAGGAAATCAAGGTTAATATGATCACTAATGCTTCATCTAATGAGAAAACTTCAAATGAGACGACATCTATGTGGAAACAATTAGTCATTCATTACGAAGAGAAGCCAAGTATTATGTCTTATATCTAA

Coding sequence (CDS)

ATGAAAACGCTTTTCCAAATCCTCCATGGAGCTGGATATTTGTCACCAAGGTTTAACAATGATGATAGAGAGAAGATTGGATGCACCAACAAGGAGCAGTGCTTATTCCATCCAGAGACAAATGACCATTTCATTGAGGACTGTTGTGAGTTCAAGAATAAGGTGCAAAAGCTGATGGACGCAAAGATTCTCTTGATAGGACAGATGAGCATGCAGGAAATCAAGGTTAATATGATCACTAATGCTTCATCTAATGAGAAAACTTCAAATGAGACGACATCTATGTGGAAACAATTAGTCATTCATTACGAAGAGAAGCCAAGTATTATGTCTTATATCTAA

Protein sequence

MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHFIEDCCEFKNKVQKLMDAKILLIGQMSMQEIKVNMITNASSNEKTSNETTSMWKQLVIHYEEKPSIMSYI
Homology
[Close]
BLAST of IVF0011614 vs. ExPASy TrEMBL
Match: A0A5D3CDQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00530 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.2e-55
Identity = 107/113 (94.69%), Postives = 110/113 (97.35%), Query Frame = 0 

Query: 1   MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHFIEDCCEFKNKVQKLMD 60
           MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDH IEDCCEFKN+VQKL+D
Sbjct: 180 MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHSIEDCCEFKNEVQKLLD 239

Query: 61  AKILLIGQMSMQEIKVNMITNASSNEKTSNETTSMWKQLVIHYEEKPSIMSYI 114
           AKILLIGQMSMQEI+VNMITNASSNEKTSNETTSMWK LVIHYEE PSIMSYI
Sbjct: 240 AKILLIGQMSMQEIEVNMITNASSNEKTSNETTSMWKPLVIHYEEMPSIMSYI 292

[Close]
BLAST of IVF0011614 vs. ExPASy TrEMBL
Match: A0A5A7VAU5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00060 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.4e-54
Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 0 

Query: 1   MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHFIEDCCEFKNKVQKLMD 60
           MKTLFQILHGAGYLSPRFNNDDREKIGCTN EQCLFHPETNDH IEDCCEFKN+VQKLMD
Sbjct: 510 MKTLFQILHGAGYLSPRFNNDDREKIGCTNNEQCLFHPETNDHSIEDCCEFKNEVQKLMD 569

Query: 61  AKILLIGQMSMQEIKVNMITNASSNEKTSNETTSMWKQLVIHYEEKPSIMSYI 114
           +KILLIGQMSMQEI+VNMITNASSNEKTSNETT MWK LVIHYEEKPSIMSYI
Sbjct: 570 SKILLIGQMSMQEIEVNMITNASSNEKTSNETTFMWKPLVIHYEEKPSIMSYI 622

[Close]
BLAST of IVF0011614 vs. ExPASy TrEMBL
Match: A0A5A7V681 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00760 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 6.9e-54
Identity = 105/113 (92.92%), Postives = 108/113 (95.58%), Query Frame = 0 

Query: 1   MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHFIEDCCEFKNKVQKLMD 60
           MKTLFQILHGAGYLSPRFNNDDREKIGCTN EQCLFHPETNDH IEDCCEFKN+VQKLMD
Sbjct: 510 MKTLFQILHGAGYLSPRFNNDDREKIGCTNNEQCLFHPETNDHSIEDCCEFKNEVQKLMD 569

Query: 61  AKILLIGQMSMQEIKVNMITNASSNEKTSNETTSMWKQLVIHYEEKPSIMSYI 114
           +KILLIGQMSMQEI+VNMITNASSNEKTSNETT MWK  VIHYEEKPSIMSYI
Sbjct: 570 SKILLIGQMSMQEIEVNMITNASSNEKTSNETTFMWKPFVIHYEEKPSIMSYI 622

[Close]
BLAST of IVF0011614 vs. ExPASy TrEMBL
Match: A0A5A7SUT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00100 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.4e-53
Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 0 

Query: 1    MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHFIEDCCEFKNKVQKLMD 60
            MKTLFQILHGAGYLSPRFNNDDREKIGCTN EQCL HPETNDH IEDCCEFKN+VQKLMD
Sbjct: 1071 MKTLFQILHGAGYLSPRFNNDDREKIGCTNNEQCLLHPETNDHSIEDCCEFKNEVQKLMD 1130

Query: 61   AKILLIGQMSMQEIKVNMITNASSNEKTSNETTSMWKQLVIHYEEKPSIMSYI 114
            +KILLIGQMSMQ+I+VNMITNASSNEKTSNETT MWK LVIHYEEKPSIMSYI
Sbjct: 1131 SKILLIGQMSMQKIEVNMITNASSNEKTSNETTFMWKPLVIHYEEKPSIMSYI 1183

[Close]
BLAST of IVF0011614 vs. ExPASy TrEMBL
Match: A0A5A7T8U4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00110 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.3e-52
Identity = 102/113 (90.27%), Postives = 108/113 (95.58%), Query Frame = 0 

Query: 1   MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHFIEDCCEFKNKVQKLMD 60
           M TLFQILH  GYLSPRFNNDD EKIGCTNKEQCLFHPETNDHFIEDCCEFKN+VQKLMD
Sbjct: 171 MNTLFQILHVVGYLSPRFNNDDEEKIGCTNKEQCLFHPETNDHFIEDCCEFKNEVQKLMD 230

Query: 61  AKILLIGQMSMQEIKVNMITNASSNEKTSNETTSMWKQLVIHYEEKPSIMSYI 114
           AKILL+GQMSMQEI+VNMIT+ASSN+KTSNETTS+WK LVIHYEEKPSIMSYI
Sbjct: 231 AKILLVGQMSMQEIEVNMITDASSNKKTSNETTSIWKPLVIHYEEKPSIMSYI 283

[Close]
BLAST of IVF0011614 vs. NCBI nr
Match: TYK09460.1 (uncharacterized protein E5676_scaffold499G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 227 bits (579), Expect = 1.65e-69
Identity = 107/113 (94.69%), Postives = 110/113 (97.35%), Query Frame = 0 

Query: 1   MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHFIEDCCEFKNKVQKLMD 60
           MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDH IEDCCEFKN+VQKL+D
Sbjct: 180 MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHSIEDCCEFKNEVQKLLD 239

Query: 61  AKILLIGQMSMQEIKVNMITNASSNEKTSNETTSMWKQLVIHYEEKPSIMSYI 113
           AKILLIGQMSMQEI+VNMITNASSNEKTSNETTSMWK LVIHYEE PSIMSYI
Sbjct: 240 AKILLIGQMSMQEIEVNMITNASSNEKTSNETTSMWKPLVIHYEEMPSIMSYI 292

[Close]
BLAST of IVF0011614 vs. NCBI nr
Match: KAA0065293.1 (uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 225 bits (574), Expect = 1.16e-65
Identity = 106/113 (93.81%), Postives = 109/113 (96.46%), Query Frame = 0 

Query: 1   MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHFIEDCCEFKNKVQKLMD 60
           MKTLFQILHGAGYLSPRFNNDDREKIGCTN EQCLFHPETNDH IEDCCEFKN+VQKLMD
Sbjct: 510 MKTLFQILHGAGYLSPRFNNDDREKIGCTNNEQCLFHPETNDHSIEDCCEFKNEVQKLMD 569

Query: 61  AKILLIGQMSMQEIKVNMITNASSNEKTSNETTSMWKQLVIHYEEKPSIMSYI 113
           +KILLIGQMSMQEI+VNMITNASSNEKTSNETT MWK LVIHYEEKPSIMSYI
Sbjct: 570 SKILLIGQMSMQEIEVNMITNASSNEKTSNETTFMWKPLVIHYEEKPSIMSYI 622

[Close]
BLAST of IVF0011614 vs. NCBI nr
Match: KAA0037719.1 (uncharacterized protein E6C27_scaffold141G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 219 bits (559), Expect = 1.21e-65
Identity = 102/113 (90.27%), Postives = 108/113 (95.58%), Query Frame = 0 

Query: 1   MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHFIEDCCEFKNKVQKLMD 60
           M TLFQILH  GYLSPRFNNDD EKIGCTNKEQCLFHPETNDHFIEDCCEFKN+VQKLMD
Sbjct: 171 MNTLFQILHVVGYLSPRFNNDDEEKIGCTNKEQCLFHPETNDHFIEDCCEFKNEVQKLMD 230

Query: 61  AKILLIGQMSMQEIKVNMITNASSNEKTSNETTSMWKQLVIHYEEKPSIMSYI 113
           AKILL+GQMSMQEI+VNMIT+ASSN+KTSNETTS+WK LVIHYEEKPSIMSYI
Sbjct: 231 AKILLVGQMSMQEIEVNMITDASSNKKTSNETTSIWKPLVIHYEEKPSIMSYI 283

[Close]
BLAST of IVF0011614 vs. NCBI nr
Match: KAA0059731.1 (uncharacterized protein E6C27_scaffold551G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 216 bits (551), Expect = 1.55e-65
Identity = 101/107 (94.39%), Postives = 104/107 (97.20%), Query Frame = 0 

Query: 1   MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHFIEDCCEFKNKVQKLMD 60
           MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDH IEDCCEFKN+VQKL+D
Sbjct: 180 MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHSIEDCCEFKNEVQKLLD 239

Query: 61  AKILLIGQMSMQEIKVNMITNASSNEKTSNETTSMWKQLVIHYEEKP 107
           AKILLIGQMSMQEI+VNMITNASSNEKTSNETTSMWK LVIHYEE P
Sbjct: 240 AKILLIGQMSMQEIEVNMITNASSNEKTSNETTSMWKPLVIHYEEMP 286

[Close]
BLAST of IVF0011614 vs. NCBI nr
Match: KAA0061241.1 (uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa])

HSP 1 Score: 224 bits (570), Expect = 3.00e-65
Identity = 105/113 (92.92%), Postives = 108/113 (95.58%), Query Frame = 0 

Query: 1   MKTLFQILHGAGYLSPRFNNDDREKIGCTNKEQCLFHPETNDHFIEDCCEFKNKVQKLMD 60
           MKTLFQILHGAGYLSPRFNNDDREKIGCTN EQCLFHPETNDH IEDCCEFKN+VQKLMD
Sbjct: 510 MKTLFQILHGAGYLSPRFNNDDREKIGCTNNEQCLFHPETNDHSIEDCCEFKNEVQKLMD 569

Query: 61  AKILLIGQMSMQEIKVNMITNASSNEKTSNETTSMWKQLVIHYEEKPSIMSYI 113
           +KILLIGQMSMQEI+VNMITNASSNEKTSNETT MWK  VIHYEEKPSIMSYI
Sbjct: 570 SKILLIGQMSMQEIEVNMITNASSNEKTSNETTFMWKPFVIHYEEKPSIMSYI 622

The following BLAST results are available for this feature:
BLAST of IVF0011614 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011614 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CDQ06.2e-5594.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VAU52.4e-5493.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7V6816.9e-5492.92Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7SUT03.4e-5392.04Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84... [more]
A0A5A7T8U41.3e-5290.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0011614 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK09460.11.65e-6994.69uncharacterized protein E5676_scaffold499G00530 [Cucumis melo var. makuwa][more]
KAA0065293.11.16e-6593.81uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa][more]
KAA0037719.11.21e-6590.27uncharacterized protein E6C27_scaffold141G00110 [Cucumis melo var. makuwa][more]
KAA0059731.11.55e-6594.39uncharacterized protein E6C27_scaffold551G00070 [Cucumis melo var. makuwa][more]
KAA0061241.13.00e-6592.92uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa][more]
BLAST of IVF0011614 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011614.1IVF0011614.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003964 RNA-directed DNA polymerase activity