IVF0011604 (gene) Melon (IVF77) v1

Overview
NameIVF0011604
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr06: 2392994 .. 2393368 (+)
RNA-Seq ExpressionIVF0011604
SyntenyIVF0011604
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCAGAAAACATTGTTACAATACTAACCATCTTCACAGTGTTCCAACGTCTGTTAGTGTTATTGATGATGTTGGACAAACTACTAAACGAAAATGTGGAAATTGTGAATGTCATTCGTGATGCCATAGAATGTGCGAATGACCAATTGAGGACCATTGCAGAGTGGCCAAAGTTAGCTATGCAAGACGAAGACGCAACCCGATTGGAAGTCATTAGACAGTTGCGGGTTATTCCTGAGCTAAGTGGATTGGATAGGGCACGGTGCCTGAGGAAGCTGATGCAGAACTTGGCCGACATGAAAGCATTCCTGGTCGTACCCGAGGAGATGAAGATGGACTACTGTAAGGTCATTCTACAAGATGACGCGTGA

mRNA sequence

ATGGCCTCAGAAAACATTGTTACAATACTAACCATCTTCACAGTGTTCCAACGTCTGTTAGTGTTATTGATGATGTTGGACAAACTACTAAACGAAAATGTGGAAATTGTGAATGTCATTCGTGATGCCATAGAATGTGCGAATGACCAATTGAGGACCATTGCAGAGTGGCCAAAGTTAGCTATGCAAGACGAAGACGCAACCCGATTGGAAGTCATTAGACAGTTGCGGGTTATTCCTGAGCTAAGTGGATTGGATAGGGCACGGTGCCTGAGGAAGCTGATGCAGAACTTGGCCGACATGAAAGCATTCCTGGTCGTACCCGAGGAGATGAAGATGGACTACTGTAAGGTCATTCTACAAGATGACGCGTGA

Coding sequence (CDS)

ATGGCCTCAGAAAACATTGTTACAATACTAACCATCTTCACAGTGTTCCAACGTCTGTTAGTGTTATTGATGATGTTGGACAAACTACTAAACGAAAATGTGGAAATTGTGAATGTCATTCGTGATGCCATAGAATGTGCGAATGACCAATTGAGGACCATTGCAGAGTGGCCAAAGTTAGCTATGCAAGACGAAGACGCAACCCGATTGGAAGTCATTAGACAGTTGCGGGTTATTCCTGAGCTAAGTGGATTGGATAGGGCACGGTGCCTGAGGAAGCTGATGCAGAACTTGGCCGACATGAAAGCATTCCTGGTCGTACCCGAGGAGATGAAGATGGACTACTGTAAGGTCATTCTACAAGATGACGCGTGA

Protein sequence

MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDDA
Homology
[Close]
BLAST of IVF0011604 vs. ExPASy TrEMBL
Match: A0A5A7UUF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001110 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.1e-58
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKL 60
           MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKL
Sbjct: 86  MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKL 145

Query: 61  AMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVIL 120
           AMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVIL
Sbjct: 146 AMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVIL 205

Query: 121 QDDA 125
           QDDA
Sbjct: 206 QDDA 209

[Close]
BLAST of IVF0011604 vs. ExPASy TrEMBL
Match: A0A5A7SSK8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00330 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.3e-21
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = 0 

Query: 33  NVEIVNVIRDAIECANDQ---LRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRAR 92
           N+EI  +    +  +++    LR I EWPKLAMQ+E ATR EVIRQL  I EL+ LD+A 
Sbjct: 147 NMEIPTMYSQGLNMSSEDIKALRAIEEWPKLAMQNESATRQEVIRQLHAIFELNILDKAY 206

Query: 93  CLRKLMQNLADMKAFLVVPEEMKMDYCKVILQDDA 125
           C+RKL QNLADMKAFL +PEEMKMDYC +ILQDDA
Sbjct: 207 CVRKLTQNLADMKAFLDIPEEMKMDYCAIILQDDA 241

[Close]
BLAST of IVF0011604 vs. ExPASy TrEMBL
Match: A0A5A7USV9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00370 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-21
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 33  NVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLR 92
           NVE + VIRDA+ECANDQLR IA+W KLAMQDED TR +VIRQL+ IPELS LDRARC++
Sbjct: 294 NVETMEVIRDAMECANDQLRAIADWSKLAMQDEDTTRWKVIRQLQAIPELSRLDRARCMQ 353

Query: 93  KLMQNLADMKAFLVVPEEMKMD 115
            +   L +MKAFL + E+MKMD
Sbjct: 354 TMAGKLDEMKAFLNLLEDMKMD 375

[Close]
BLAST of IVF0011604 vs. ExPASy TrEMBL
Match: A0A5A7VC47 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00690 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-17
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 0 

Query: 38  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQN 97
           +++R AIE  N+QL  IAEWP L  QD   TR E++RQL VIPEL+ +DR R +R LM+N
Sbjct: 216 DIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEVIPELTLMDRCRLMRILMRN 275

Query: 98  LADMKAFLVVPEEMKMDYCKVILQDD 124
           + DMKAFL VP+ MK  YC +ILQ++
Sbjct: 276 VDDMKAFLEVPDNMKYPYCSIILQEN 301

[Close]
BLAST of IVF0011604 vs. ExPASy TrEMBL
Match: A0A5A7U8U9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001220 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-17
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 0 

Query: 38  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQN 97
           +++R AIE  N+QL  IAEWP L +QD   TR E++RQL  IPEL+ +DR R +R LM+N
Sbjct: 37  DIVRTAIEYGNEQLHRIAEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRN 96

Query: 98  LADMKAFLVVPEEMKMDYCKVILQDD 124
           + DMKAFL VP+ MK  YC +ILQ++
Sbjct: 97  VDDMKAFLEVPDNMKYPYCSIILQEN 122

[Close]
BLAST of IVF0011604 vs. NCBI nr
Match: KAA0058838.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK11255.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (594), Expect = 1.08e-75
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKL 60
           MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKL
Sbjct: 86  MASENIVTILTIFTVFQRLLVLLMMLDKLLNENVEIVNVIRDAIECANDQLRTIAEWPKL 145

Query: 61  AMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVIL 120
           AMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVIL
Sbjct: 146 AMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEEMKMDYCKVIL 205

Query: 121 QDDA 124
           QDDA
Sbjct: 206 QDDA 209

[Close]
BLAST of IVF0011604 vs. NCBI nr
Match: KAA0033940.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02891.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 1.81e-27
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 51  LRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQNLADMKAFLVVPEE 110
           LR I EWPKLAMQ+E ATR EVIRQL  I EL+ LD+A C+RKL QNLADMKAFL +PEE
Sbjct: 168 LRAIEEWPKLAMQNESATRQEVIRQLHAIFELNILDKAYCVRKLTQNLADMKAFLDIPEE 227

Query: 111 MKMDYCKVILQDDA 124
           MKMDYC +ILQDDA
Sbjct: 228 MKMDYCAIILQDDA 241

[Close]
BLAST of IVF0011604 vs. NCBI nr
Match: KAA0056591.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24273.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 110 bits (274), Expect = 8.11e-26
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 33  NVEIVNVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLR 92
           NVE + VIRDA+ECANDQLR IA+W KLAMQDED TR +VIRQL+ IPELS LDRARC++
Sbjct: 294 NVETMEVIRDAMECANDQLRAIADWSKLAMQDEDTTRWKVIRQLQAIPELSRLDRARCMQ 353

Query: 93  KLMQNLADMKAFLVVPEEMKMD 114
            +   L +MKAFL + E+MKMD
Sbjct: 354 TMAGKLDEMKAFLNLLEDMKMD 375

[Close]
BLAST of IVF0011604 vs. NCBI nr
Match: KAA0051580.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 1.14e-23
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 0 

Query: 38  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQN 97
           +++R AIE  N+QL  IAEWP L +QD   TR E++RQL  IPEL+ +DR R +R LM+N
Sbjct: 37  DIVRTAIEYGNEQLHRIAEWPILQLQDATQTRQEIVRQLEAIPELTLMDRCRLMRILMRN 96

Query: 98  LADMKAFLVVPEEMKMDYCKVILQDD 123
           + DMKAFL VP+ MK  YC +ILQ++
Sbjct: 97  VDDMKAFLEVPDNMKYPYCSIILQEN 122

[Close]
BLAST of IVF0011604 vs. NCBI nr
Match: KAA0052025.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04535.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 2.79e-23
Identity = 48/86 (55.81%), Postives = 63/86 (73.26%), Query Frame = 0 

Query: 38  NVIRDAIECANDQLRTIAEWPKLAMQDEDATRLEVIRQLRVIPELSGLDRARCLRKLMQN 97
           NV+R AI+  N+QL  IAEWP L  QD + TR EV+RQL  IPEL+ +DR R +R LM+N
Sbjct: 44  NVLRTAIKYGNEQLNRIAEWPVLQHQDINQTRQEVVRQLEAIPELTLMDRCRLMRMLMRN 103

Query: 98  LADMKAFLVVPEEMKMDYCKVILQDD 123
           + D+KAFL VP+ MK  YC +ILQ++
Sbjct: 104 IDDIKAFLEVPDNMKYPYCSIILQEN 129

The following BLAST results are available for this feature:
BLAST of IVF0011604 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011604 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UUF75.1e-58100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SSK81.3e-2162.11Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7USV92.9e-2168.29Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VC471.1e-1755.81Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U8U91.5e-1754.65Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0011604 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0058838.11.08e-75100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK11255.1 retrotransposon p... [more]
KAA0033940.11.81e-2775.68retrotransposon protein [Cucumis melo var. makuwa] >TYK02891.1 retrotransposon p... [more]
KAA0056591.18.11e-2668.29retrotransposon protein [Cucumis melo var. makuwa] >TYK24273.1 retrotransposon p... [more]
KAA0051580.11.14e-2354.65retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0052025.12.79e-2355.81retrotransposon protein [Cucumis melo var. makuwa] >TYK04535.1 retrotransposon p... [more]
BLAST of IVF0011604 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011604.1IVF0011604.1mRNA