IVF0011548 (gene) Melon (IVF77) v1

Overview


Name	IVF0011548
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	structure-specific endonuclease subunit slx1
Location	chr04: 22677710 .. 22680701 (+)
RNA-Seq Expression	IVF0011548
Synteny	IVF0011548

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACTGCTCTCTCAAACATTTCGTTGCCAAAAACCCCCTATTTCAAATCCACGACTACCCAAATCTTCTTCTTCCTCAACCAAGGGTCCAACACTGATCGTTAAATTGGAGGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCATCAAAACCTATGTAGGGGTCACCCTTGACTTCGATCGACGGTAACTCCAATTTCTTCTCTTCTGTTCCTTGTTCCAACAACAGATTCCATGATTTGAGGTTGAAAAGTTATCTGTGTCATCTTCGATTAGCCTTAAAAAGCTGATAGCCTCTAGTGAATTTCATTGGCATACAAATTGGCACTTTGCAACTTTAGATGTCCTTTATGCATAAAAGCTATACAAATATTTCTCATGTCATAAAGTTGGGCTCTTGTACAGTTGAAACAGCATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCAAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAAGTCAGGTATTCAATTAAATTACATACTTCTAGAATCATGCTGCATTTGGGCTCTAATTTCAAGTGCATTGCTTGGTTTTTCGTGATTGTGTCATTCTAGACATTATGTTGCCTTGGGCTTTTGCAAACTTGAGTTGTCTCCTAGTTTCTAGGTTGTGGCAGTGATCTTGCTAAGTAAGATAGATGACAATTCATGATGGATATGTGCCAAGTGCGATAGTATTGGGTACTAGCAGTTGAAGCATTGATGGGGCCAGAGGAGGCAAAAGATAATGTGGTGACTTGGGATTTCATTTCATGCTCCAAAAGACACAGGGAATAGAAGAAACTTTAGTTAACCTAAAATTTTAATTCATCAATTAAAGGTGGAAAATTTTCTTTATCTGTTTAAGTACCAGTATAAGATGATTCAAGGTTGAAGACACTACTCTTGTTAGTTGACAAGAAAGTGCTGCAAAACCCTGTGCCAGAATACCGAAGACATACTTTCTGGTATCTGAAACTCTCTTATCCTTGCAACTGGAAGTACTAATGAGACTGGAAATAGGCAAATACATAGAATGCAGCGTTTAAATTGTTTTGTACTCTTAACTGGCCCCCTTAAACAGCATTGGCAACAGGAGTAGGAGTTAAACATGTTTAAATTAAGGGTGCATATCTGAGTGGAAACTGACATGCTATGGCAACGCCAAGTAAGAAGATATTTAGCTTGATTGGGCCATCGTCATATAAATCCATGGAAATGGTCTCCCATATTGGGTAAAAGTGCATCAATATAGCTGCAAAAGGAGAGACAATGGTAACAAATATAATACTGTGCTAGACCTTTTAAGGGGTGTGGCCCAAGGAGTTAGGAGAGGAGATGCGAGGAGCTCCACTTCGCCCAAGGAGTTTGTAGGCTTCCTAACTAAAACCCATCAATTTTGTGTCATATTAAATCGTTGCACTATGAGTCCTAGGAGCTGACAACTCCACTCCTTATCCGAAACACCCCTTTCGTAAGTGAGTGTGAAGCATAGAGAGTCGGGAAGGAGTGACTTGGCATTAATCGAGAACTGTATTGGTTAGGATGGATGTAACTAGTTAGTTAGACCAGCATGAGCGGTGTGACTTGCGTAGTATTAGAAGTGAGGTCAGGCCAGAGATAGGGAACTCTTGGATTCTCCCTTGGCTACACATTATTTAATATGAAGCAGTTTCTATCATATAATTTTTTCTTCCCATAAGGTAGAGATCTAGAAACAAGCTCATTAACTTTCATTAATGTCTACCAAAAGGGCACAAATAAAGGCAATAGTAAACACAGATGATCAGATAATAGTTGAATTCTTTTTCCTGTTTGGGAAAGGAACTGATACATTTGCAGGTGAAATGGTCAAGAACAGTTTCAGGGCTCCATAATTCATGCCCTAAGTTTGTGTAATGAACCAACTATGATATTTCTGATTTCCACTGCTGAGACAACTGCATGCATAAATACTGTGATTGGATTGACTTATTTATGCAAAGAAACAAACATATTCAATATTTTACACAGCTTGCATTCCTCTTGCTTATCCATTTGGTAATCATCAGTTCTCAAATTATATGCATGTTAAGACTCATACCTACCAAATTGGGCCTTCCATCTTTAGTGCCTTAACATCTTTTTCCTTTAGAAATGAAACAAGTTGCAATTTTTTAATCACCATGTGTGGTATCCCATTATCATTCGCATGGCATTGGAAGGGAAGTAGTTGGGGGTGTACTTACTTCTGTCAAGGGAAATGAAGCACCTGGGAGATTTCTAGTACTCCCTAGTATTATACTTCCTTTGTTCATACTATAAATTGGTCTTCATAAATGTTAGTAGATCCGACCCTACTTTTAAAAAGCGTGTTGTTGTGATACACAATAAATGGAGGGAGTTTTTCGTAGTCTCATAGTAAAGAAAATTATCCCCAACTCATTGTCATCCTTTAAACAACTTTTGGTAAGAAGTAATTTGTAGTAATCACTACACAACAAAAATTGTCGAGTTTCACTTGTATCTATTGATCGTATGTTATGTGACTTAATCTTATAAATGTCTTGTTTCTGGTTGCATTTATGATTCATATTGTTGTGCTATTCTTCAAATTTCATTAAGACAATGATTTCATTTTGAAACCTTATATTAAGTTTTCTTTGGTTCATCAACTTGACACCGAATTTCTCGTGTTTTTCGACGGGAAATGTTCTGTAAAATCATTCCCACACCATTTCTGATGCTGTTTTTGTATCTTTATATGCAGCTTGTGAGTTTGAATCAAAAGGAAAAAAGTTTCAAGGAAAATATCGTATGAGAAGAAGGAGGATGATGTGGGAAAGCAATTAGATAATCAAACATTAAGATTACTCAAGCACAGGCAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCATTTTGAGTTTGATTGGAAATTAGATCCTTTCTGA

mRNA sequence

ATGAGACTGCTCTCTCAAACATTTCGTTGCCAAAAACCCCCTATTTCAAATCCACGACTACCCAAATCTTCTTCTTCCTCAACCAAGGGTCCAACACTGATCGTTAAATTGGAGGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCATCAAAACCTATTTGGGCTCTTGTACAGTTGAAACAGCATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCAAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAATTTCAAGGAAAATATCGTATGAGAAGAAGGAGGATGATGTGGGAAAGCAATTAGATAATCAAACATTAAGATTACTCAAGCACAGGCAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCATTTTGAGTTTGATTGGAAATTAGATCCTTTCTGA

Coding sequence (CDS)

ATGAGACTGCTCTCTCAAACATTTCGTTGCCAAAAACCCCCTATTTCAAATCCACGACTACCCAAATCTTCTTCTTCCTCAACCAAGGGTCCAACACTGATCGTTAAATTGGAGGAGCCGAAGCCTAAGCAATGGTGTGTTTATCTCATCATCTCCTCCAATTCCCCATCAAAACCTATTTGGGCTCTTGTACAGTTGAAACAGCATAATGGTGAAATAAAAGGTGGTGCAAAAGCAACTCAAGCGGGACGACCCTGGATTTGTGCGTGCACAATTCATGGTTTTAAAGACCAAATTTCAAGGAAAATATCGTATGAGAAGAAGGAGGATGATGTGGGAAAGCAATTAGATAATCAAACATTAAGATTACTCAAGCACAGGCAAAGAGCTTTAGGAAAAGTGAAGTGTCTGTTTGATTGCAGTCATTTTGAGTTTGATTGGAAATTAGATCCTTTCTGA

Protein sequence

MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPIWALVQLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF

Homology

[Close]

BLAST of IVF0011548 vs. ExPASy Swiss-Prot
Match: B6JY16 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) OX=402676 GN=slx1 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 45  WCVYLIISSNSPSKPIW------ALVQLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ 101
           +C YL++S  + S+ ++         +L+QHNGEIKGGA  T+  RPW  AC +HGF  +
Sbjct: 3   YCCYLLVSEKAASRSVYIGSTPDPARRLRQHNGEIKGGAYKTKRSRPWKVACFVHGFPTK 62

[Close]

BLAST of IVF0011548 vs. ExPASy Swiss-Prot
Match: Q9P7M3 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=slx1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-06
Identity = 24/63 (38.10%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 45  WCVYLIISSNSPSKPIWAL-------VQLKQHNGEIKGGAKATQAGRPWICACTIHGFKD 101
           +C YL+ S+ + S     +        +L+QHNGEI GGA  T+ GRPW  +C ++GF +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFPN 66

[Close]

BLAST of IVF0011548 vs. ExPASy Swiss-Prot
Match: Q0UAL6 (Structure-specific endonuclease subunit SLX1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=SLX1 PE=3 SV=3)

HSP 1 Score: 47.8 bits (112), Expect = 1.3e-04
Identity = 29/73 (39.73%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 35  VKLE-EPKPKQWCVYLIISSNSPSKPIWALV----QLKQHNGEIKGGAKAT--QAGRPWI 94
           +K+E  P P  +C YL+ S N  S  I +      +L QHNG  KGGAK T  Q  RPW 
Sbjct: 5   LKIESRPIPAFYCCYLLRSKNRKSYYIGSTPNPARRLGQHNGSSKGGAKRTSMQGKRPWE 64

Query: 95  CACTIHGFKDQIS 101
             C + GF  + +
Sbjct: 65  MTCIVTGFPSKFA 77

[Close]

BLAST of IVF0011548 vs. ExPASy Swiss-Prot
Match: Q5CT62 (Structure-specific endonuclease subunit SLX1 homolog OS=Cryptosporidium parvum (strain Iowa II) OX=353152 GN=cgd2_4280 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-04
Identity = 22/60 (36.67%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 45  WCVYLIISSNSPSKPIWALV----QLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQIS 101
           +C +L+  +   +  I   V    +L+QHNGEIK GAK T++G PW     + GF D+++
Sbjct: 9   YCYFLLSEAKKKASYIGYSVNPCRRLRQHNGEIKKGAKKTKSGVPWNLGICVGGFPDRVA 68

[Close]

BLAST of IVF0011548 vs. ExPASy Swiss-Prot
Match: B2WM34 (Structure-specific endonuclease subunit slx1 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) OX=426418 GN=slx1 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.0e-04
Identity = 26/67 (38.81%), Postives = 34/67 (50.75%), Query Frame = 0


Query: 40  PKPKQWCVYLIISSNSPSKPIWALV----QLKQHNGEIKGGAKAT--QAGRPWICACTIH 99
           P P  +C YL+ S N  +  I +      +L QHNG  KGGAK T  Q  RPW   C + 
Sbjct: 11  PLPAFYCCYLLRSKNRKAFYIGSTPNPARRLGQHNGSSKGGAKRTSMQGKRPWEMTCIVT 70

Query: 100 GFKDQIS 101
           GF  + +
Sbjct: 71  GFPSRFA 77

[Close]

BLAST of IVF0011548 vs. ExPASy TrEMBL
Match: A0A1S3CFH5 (structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC103500344 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.7e-74
Identity = 143/169 (84.62%), Postives = 146/169 (86.39%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPI 60
           MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSP K  
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY 60

Query: 61  WALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ------------ISRKI 120
             +      +LKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ            +SRKI
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKI 120

Query: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 153
           SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
Sbjct: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 169

[Close]

BLAST of IVF0011548 vs. ExPASy TrEMBL
Match: A0A0A0LCZ9 (GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 128/170 (75.29%), Postives = 137/170 (80.59%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPSKP 60
           MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSP K 
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  IWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ------------ISRK 120
              +      +LKQHNGEIKGGAKAT+AGRPWICACTIHGFKDQ            +SRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 153
           ISYEKKE+DVGK LD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Sbjct: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

[Close]

BLAST of IVF0011548 vs. ExPASy TrEMBL
Match: A0A6J1F1V2 (structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LOC111441428 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.4e-48
Identity = 109/168 (64.88%), Postives = 124/168 (73.81%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPI 60
           MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVK  EP+PK+WCVYLIISSN P K  
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVK-SEPEPKKWCVYLIISSNPPIKTY 60

Query: 61  WALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ------------ISRKI 120
             +      +LKQHNGEIKGGAKAT+AGRPWICAC IHGFKDQ            I RK+
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKM 120

Query: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP 152
            + +KE     ++D+ TLRLLK RQRALGKVK LFDC+ FEFDW+LDP
Sbjct: 121 CHMRKE-----EVDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 162

[Close]

BLAST of IVF0011548 vs. ExPASy TrEMBL
Match: A0A6J1J5C9 (structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.5e-48
Identity = 108/169 (63.91%), Postives = 125/169 (73.96%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPI 60
           MRLLSQTFR QK PIS+P + KSSSSSTK PTL +K  EP+ K+WCVYLIISSN P K  
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLTIK-SEPETKKWCVYLIISSNPPIKTY 60

Query: 61  WALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ------------ISRKI 120
             +      +LKQHNGEIKGGAKAT+AGRPWICAC IHGFK+Q            I RK+
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKNQSQACEFESKWKEICRKM 120

Query: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 153
           S+ +KE     ++D+QTLRLLK RQRALGKVK LFDC+ FEFDW+LDPF
Sbjct: 121 SHMRKE-----EVDDQTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPF 163

[Close]

BLAST of IVF0011548 vs. ExPASy TrEMBL
Match: A0A6J1DGL6 (structure-specific endonuclease subunit SLX1 OS=Momordica charantia OX=3673 GN=LOC111020266 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.5e-46
Identity = 105/171 (61.40%), Postives = 121/171 (70.76%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEP--KPKQWCVYLIISSNSPSK 60
           MRLLS TFRC K PISNP+   SSSSSTK P+      E   KPK WCVYLIISSNSP K
Sbjct: 33  MRLLSHTFRCHKSPISNPK--PSSSSSTKDPSAATLSFESQLKPKPWCVYLIISSNSPFK 92

Query: 61  PIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ------------ISR 120
               +      +LKQHNGEIKGGAKAT+AGRPW+CAC IHGFKDQ            +SR
Sbjct: 93  TYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQACEFESKWKEVSR 152

Query: 121 KISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 153
           KI++++K+DD  +Q D Q LRLLK+RQRAL KVK +FDCS FEFD +LDPF
Sbjct: 153 KIAHKRKKDDEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDGQLDPF 201

[Close]

BLAST of IVF0011548 vs. NCBI nr
Match: XP_008461838.1 (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_008461839.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo])

HSP 1 Score: 286 bits (732), Expect = 8.32e-97
Identity = 143/169 (84.62%), Postives = 146/169 (86.39%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPI 60
           MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSP K  
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPIKTY 60

Query: 61  WALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ------------ISRKI 120
             +      +LKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ            +SRKI
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQACEFESKWKKVSRKI 120

Query: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 152
           SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF
Sbjct: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 169

[Close]

BLAST of IVF0011548 vs. NCBI nr
Match: XP_004151512.1 (structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypothetical protein Csa_001754 [Cucumis sativus])

HSP 1 Score: 247 bits (631), Expect = 2.13e-81
Identity = 128/170 (75.29%), Postives = 137/170 (80.59%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLE-EPKPKQWCVYLIISSNSPSKP 60
           MRLLS TFRC KPPISNP L KSSSSS+K PTLIVK E +PK KQWCVYLIISSNSP K 
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDPTLIVKSEPKPKLKQWCVYLIISSNSPIKT 60

Query: 61  IWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ------------ISRK 120
              +      +LKQHNGEIKGGAKAT+AGRPWICACTIHGFKDQ            +SRK
Sbjct: 61  YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQACEFESKWKKVSRK 120

Query: 121 ISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 152
           ISYEKKE+DVGK LD+QTLRLLKHR+RALGKVKCLFDCS FEFDWKLDPF
Sbjct: 121 ISYEKKEEDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

[Close]

BLAST of IVF0011548 vs. NCBI nr
Match: XP_038903984.1 (structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida])

HSP 1 Score: 241 bits (615), Expect = 5.44e-79
Identity = 124/169 (73.37%), Postives = 135/169 (79.88%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPI 60
           MRLLSQTFR QKP  SN +L KSSSSSTK P LIVK  EPKPKQWCVYLIISSNSP K  
Sbjct: 1   MRLLSQTFRTQKPSNSNSQLSKSSSSSTKDPILIVK-SEPKPKQWCVYLIISSNSPIKTY 60

Query: 61  WALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ------------ISRKI 120
             +      +LKQHNGEIKGGAKAT+ GRPW+CACTIHGFKDQ            +SRKI
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRTGRPWLCACTIHGFKDQGQACEFESKWKEVSRKI 120

Query: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 152
           SY+KKEDD+GKQ+D+QTLRLLKHRQRALGKVKCLFDCS FEF+WKLDPF
Sbjct: 121 SYKKKEDDMGKQVDDQTLRLLKHRQRALGKVKCLFDCSQFEFNWKLDPF 168

[Close]

BLAST of IVF0011548 vs. NCBI nr
Match: XP_022934184.1 (structure-specific endonuclease subunit slx1 [Cucurbita moschata])

HSP 1 Score: 201 bits (511), Expect = 3.15e-63
Identity = 109/168 (64.88%), Postives = 124/168 (73.81%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPI 60
           MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVK  EP+PK+WCVYLIISSN P K  
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVK-SEPEPKKWCVYLIISSNPPIKTY 60

Query: 61  WALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ------------ISRKI 120
             +      +LKQHNGEIKGGAKAT+AGRPWICAC IHGFKDQ            I RK+
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKM 120

Query: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP 151
            + +KE+     +D+ TLRLLK RQRALGKVK LFDC+ FEFDW+LDP
Sbjct: 121 CHMRKEE-----VDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 162

[Close]

BLAST of IVF0011548 vs. NCBI nr
Match: KAG7018060.1 (slx1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201 bits (510), Expect = 4.47e-63
Identity = 109/168 (64.88%), Postives = 124/168 (73.81%), Query Frame = 0


Query: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGPTLIVKLEEPKPKQWCVYLIISSNSPSKPI 60
           MRLLSQTFR QK PIS+P + KSSSSSTK PTLIVK  EP+PK+WCVYLIISSN P K  
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVPTLIVK-SEPEPKKWCVYLIISSNPPIKTY 60

Query: 61  WALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQ------------ISRKI 120
             +      +LKQHNGEIKGGAKAT+AGRPWICAC IHGFKDQ            I RK+
Sbjct: 61  VGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQACEFESKWKEICRKM 120

Query: 121 SYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDP 151
            + +KE+     +D+ TLRLLK RQRALGKVK LFDC+ FEFDW+LDP
Sbjct: 121 CHLRKEE-----VDDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 162

[Close]

BLAST of IVF0011548 vs. TAIR 10
Match: AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 115.5 bits (288), Expect = 3.6e-26
Identity = 72/173 (41.62%), Postives = 96/173 (55.49%), Query Frame = 0


Query: 2   RLLSQTFRCQKPPISNPRLP-----KSSSSSTKGPTLIVKLEE---PKPKQWCVYLIISS 61
           RLLS+TF   K   SNP+ P     K+S +    P+     E    PK K W VYLI+S+
Sbjct: 3   RLLSRTFPSVKLRDSNPKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILST 62

Query: 62  NSPSKPIWALV-----QLKQHNGEIKGGAKATQAGRPWICACTIHGFK------------ 121
             P K    +      +LKQHNGEI+GGAKA+ AGRPW+CAC I GF             
Sbjct: 63  TEPIKTYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGFTCLSQASSFESKW 122

Query: 122 DQISRKISYEKKEDDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKL 150
              +RK+   KK++D+     +Q+  LL+HR+RAL KV+   DCS+ E DWK+
Sbjct: 123 KIFTRKLPRRKKDEDM-----SQSDALLQHRRRALNKVEESLDCSYLETDWKI 170

The following BLAST results are available for this feature:

BLAST of IVF0011548 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6JY16	2.0e-08	41.94	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (s...	[more]
Q9P7M3	3.1e-06	38.10	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strai...	[more]
Q0UAL6	1.3e-04	39.73	Structure-specific endonuclease subunit SLX1 OS=Phaeosphaeria nodorum (strain SN...	[more]
Q5CT62	1.7e-04	36.67	Structure-specific endonuclease subunit SLX1 homolog OS=Cryptosporidium parvum (...	[more]
B2WM34	5.0e-04	38.81	Structure-specific endonuclease subunit slx1 OS=Pyrenophora tritici-repentis (st...	[more]

BLAST of IVF0011548 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CFH5	4.7e-74	84.62	structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A0A0LCZ9	2.4e-62	75.29	GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=...	[more]
A0A6J1F1V2	3.4e-48	64.88	structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J5C9	4.5e-48	63.91	structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1DGL6	5.5e-46	61.40	structure-specific endonuclease subunit SLX1 OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of IVF0011548 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461838.1	8.32e-97	84.62	PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_00846...	[more]
XP_004151512.1	2.13e-81	75.29	structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypot...	[more]
XP_038903984.1	5.44e-79	73.37	structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]	[more]
XP_022934184.1	3.15e-63	64.88	structure-specific endonuclease subunit slx1 [Cucurbita moschata]	[more]
KAG7018060.1	4.47e-63	64.88	slx1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of IVF0011548 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43210.1	3.6e-26	41.62	Excinuclease ABC, C subunit, N-terminal	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035901	GIY-YIG endonuclease superfamily	GENE3D	3.40.1440.10		coord: 64..144 e-value: 3.3E-5 score: 25.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR20208:SF13	EMB\|CAB76036.1	coord: 18..151
None	No IPR available	PANTHER	PTHR20208	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 18..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011548.1	IVF0011548.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0033557	Slx1-Slx4 complex
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0008821	crossover junction endodeoxyribonuclease activity