IVF0011497 (gene) Melon (IVF77) v1

Overview
NameIVF0011497
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr06: 1999665 .. 2000283 (+)
RNA-Seq ExpressionIVF0011497
SyntenyIVF0011497
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCCACGAACCTTCAAACAGCCACTGCCCATTTCACCAACTTGTATAGCCCGACCCATTTTGCCTCAGATTCTGAAACTTACCTTACTAGCCCAAATCCTGATTTTTGAGACTCAATCTCTTGATGTTGCCATTTTTGGAGAAGATCCTACTGAAGCCCATCAACTCCTTTTGATTCTTCCACCTATTCCCAAATATCTTAATCGGTTGGTTCATAGCTCTCCAACTCCACTAACGTCAACTTCCTCGCAAACAATAAATGTTCCACATCCTCCAGCAAACTCTTTAAACCTTCAAGGTTTGCCGCAATCCTTGCTCCACATGGACTTAGTATTATGGTTGTTCCTCCTCTTCCCCGGGCAAAAAAATAAGAGGATGGCCTCCACTGCCAGTAAACGTGCTAAATTACAGAGAGAACTTCAAAATCTTCATTGCTCAATCAACTATGACAAATCAGCAACCCTTGCCATATCTGAGGGAGATTATGGTGATCAATGAAAGTTATCTCTTGGAATGTTTGCGAACTTAATTCCTGGAGAAAACGAGCCTTGGTTAAATAGTTGATTCAACTTTACAACCCTAATTTTGTTCTTTTGCAGGAAACCAAGTTATCTAG

mRNA sequence

ATGGGCCCACGAACCTTCAAACAGCCACTGCCCATTTCACCAACTTGTATAGCCCGACCCATTTTGCCTCAGATTCTGAAACTTACCTTACTAGCCCAAATCCTGATTTTTGAGACTCAATCTCTTGATGTTGCCATTTTTGGAGAAGATCCTACTGAAGCCCATCAACTCCTTTTGATTCTTCCACCTATTCCCAAATATCTTAATCGGTTGGTTCATAGCTCTCCAACTCCACTAACGTCAACTTCCTCGCAAACAATAAATGTTCCACATCCTCCAGCAAACTCTTTAAACCTTCAAGGTTTGCCGCAATCCTTGCTCCACATGGACTTAGTATTATGGTTGTTCCTCCTCTTCCCCGGGCAAAAAAATAAGAGGATGGCCTCCACTGCCAGTAAACGTGCTAAATTACAGAGAGAACTTCAAAATCTTCATTGCTCAATCAACTATGACAAATCAGCAACCCTTGCCATATCTGAGGGAGATTATGGAAACCAAGTTATCTAG

Coding sequence (CDS)

ATGGGCCCACGAACCTTCAAACAGCCACTGCCCATTTCACCAACTTGTATAGCCCGACCCATTTTGCCTCAGATTCTGAAACTTACCTTACTAGCCCAAATCCTGATTTTTGAGACTCAATCTCTTGATGTTGCCATTTTTGGAGAAGATCCTACTGAAGCCCATCAACTCCTTTTGATTCTTCCACCTATTCCCAAATATCTTAATCGGTTGGTTCATAGCTCTCCAACTCCACTAACGTCAACTTCCTCGCAAACAATAAATGTTCCACATCCTCCAGCAAACTCTTTAAACCTTCAAGGTTTGCCGCAATCCTTGCTCCACATGGACTTAGTATTATGGTTGTTCCTCCTCTTCCCCGGGCAAAAAAATAAGAGGATGGCCTCCACTGCCAGTAAACGTGCTAAATTACAGAGAGAACTTCAAAATCTTCATTGCTCAATCAACTATGACAAATCAGCAACCCTTGCCATATCTGAGGGAGATTATGGAAACCAAGTTATCTAG

Protein sequence

MGPRTFKQPLPISPTCIARPILPQILKLTLLAQILIFETQSLDVAIFGEDPTEAHQLLLILPPIPKYLNRLVHSSPTPLTSTSSQTINVPHPPANSLNLQGLPQSLLHMDLVLWLFLLFPGQKNKRMASTASKRAKLQRELQNLHCSINYDKSATLAISEGDYGNQVI
Homology
BLAST of IVF0011497 vs. ExPASy TrEMBL
Match: A0A5A7U5M3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001530 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.2e-83
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 0

Query: 1   MGPRTFKQPLPISPTCIARPILPQILKLTLLAQILIFETQSLDVAIFGEDPTEAHQLLLI 60
           MGPRTFKQPLPISP CIARPILPQILKLTLLAQILIFETQSLDVAIFGEDPTEAHQLLLI
Sbjct: 7   MGPRTFKQPLPISPACIARPILPQILKLTLLAQILIFETQSLDVAIFGEDPTEAHQLLLI 66

Query: 61  LPPIPKYLNRLVHSSPTPLTSTSSQTINVPHPPANSLNLQGLPQSLLHMDLVLWLFLLFP 120
           LPPIPK LNRLVHSSPTPLTSTSSQTINVPHPPANSLNLQGLPQSLLHMDLVLWLFLLFP
Sbjct: 67  LPPIPKDLNRLVHSSPTPLTSTSSQTINVPHPPANSLNLQGLPQSLLHMDLVLWLFLLFP 126

Query: 121 GQKNKRMASTASKRAKLQRELQNLHCSINYDKSATLAISEGDYGNQ 167
           GQKNKRMASTASKRAKLQRELQNLHCSINYDKSATLAISEGDYG+Q
Sbjct: 127 GQKNKRMASTASKRAKLQRELQNLHCSINYDKSATLAISEGDYGDQ 172

BLAST of IVF0011497 vs. ExPASy TrEMBL
Match: A0A5D3BZG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00370 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08
Identity = 49/127 (38.58%), Postives = 71/127 (55.91%), Query Frame = 0

Query: 37  FETQSLDVAIFGEDPTEAHQLLLILPPIP-KYLNRLVHSSPTPLTSTSSQTINVPH-PPA 96
           F T SL+ A+FGE+P+E+   + ILPP+P  + + + H  P+   STS    ++P    A
Sbjct: 48  FATHSLENAVFGENPSESDLPITILPPVPTDFHSPMQHPIPSKQPSTS----DIPSTSTA 107

Query: 97  NSLNLQGLPQSLLHMDLVLWLFLLFPGQKNKRMASTASKRAKLQRELQNLHCSINYDKSA 156
             ++L+ +   LL   L +      P  K K+  +  ++R KLQRELQNL  SI YDKS 
Sbjct: 108 TPISLRDIASILLQHGLCVMAIPSLPPPKLKKPYTANTERNKLQRELQNLQSSICYDKSL 167

Query: 157 TLAISEG 162
            LA  EG
Sbjct: 168 ALANREG 170

BLAST of IVF0011497 vs. ExPASy TrEMBL
Match: A0A0A0LW63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181550 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.7e-05
Identity = 44/104 (42.31%), Postives = 52/104 (50.00%), Query Frame = 0

Query: 58  LLILPPIPKYLNRLVHSS--------PTPLTSTSSQTINVPHPPANSLNLQGLPQSLLHM 117
           L ILPPI + L   +H+S        P P   T+S    +P P   SL        L   
Sbjct: 45  LAILPPISEDLTHPIHTSSEHQQSLHPNPNNQTASTQPIIPLPDLASL--------LAQH 104

Query: 118 DLVLWLFLLFPGQKNKRMASTASKRAKLQRELQNLHCSINYDKS 154
            L  W F LF  QK  +  ST  KR K+QRELQNLH SI+YDKS
Sbjct: 105 GLCTWAFPLFLLQKLLKDLSTTIKRNKMQRELQNLHSSIHYDKS 140

BLAST of IVF0011497 vs. NCBI nr
Match: KAA0050510.1 (hypothetical protein E6C27_scaffold175G001530 [Cucumis melo var. makuwa])

HSP 1 Score: 315 bits (807), Expect = 6.51e-108
Identity = 163/166 (98.19%), Postives = 164/166 (98.80%), Query Frame = 0

Query: 1   MGPRTFKQPLPISPTCIARPILPQILKLTLLAQILIFETQSLDVAIFGEDPTEAHQLLLI 60
           MGPRTFKQPLPISP CIARPILPQILKLTLLAQILIFETQSLDVAIFGEDPTEAHQLLLI
Sbjct: 7   MGPRTFKQPLPISPACIARPILPQILKLTLLAQILIFETQSLDVAIFGEDPTEAHQLLLI 66

Query: 61  LPPIPKYLNRLVHSSPTPLTSTSSQTINVPHPPANSLNLQGLPQSLLHMDLVLWLFLLFP 120
           LPPIPK LNRLVHSSPTPLTSTSSQTINVPHPPANSLNLQGLPQSLLHMDLVLWLFLLFP
Sbjct: 67  LPPIPKDLNRLVHSSPTPLTSTSSQTINVPHPPANSLNLQGLPQSLLHMDLVLWLFLLFP 126

Query: 121 GQKNKRMASTASKRAKLQRELQNLHCSINYDKSATLAISEGDYGNQ 166
           GQKNKRMASTASKRAKLQRELQNLHCSINYDKSATLAISEGDYG+Q
Sbjct: 127 GQKNKRMASTASKRAKLQRELQNLHCSINYDKSATLAISEGDYGDQ 172

BLAST of IVF0011497 vs. NCBI nr
Match: TYK05133.1 (hypothetical protein E5676_scaffold1769G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 1.38e-10
Identity = 49/127 (38.58%), Postives = 71/127 (55.91%), Query Frame = 0

Query: 37  FETQSLDVAIFGEDPTEAHQLLLILPPIPK-YLNRLVHSSPTPLTSTSSQTINVPHPP-A 96
           F T SL+ A+FGE+P+E+   + ILPP+P  + + + H  P+   STS    ++P    A
Sbjct: 48  FATHSLENAVFGENPSESDLPITILPPVPTDFHSPMQHPIPSKQPSTS----DIPSTSTA 107

Query: 97  NSLNLQGLPQSLLHMDLVLWLFLLFPGQKNKRMASTASKRAKLQRELQNLHCSINYDKSA 156
             ++L+ +   LL   L +      P  K K+  +  ++R KLQRELQNL  SI YDKS 
Sbjct: 108 TPISLRDIASILLQHGLCVMAIPSLPPPKLKKPYTANTERNKLQRELQNLQSSICYDKSL 167

Query: 157 TLAISEG 161
            LA  EG
Sbjct: 168 ALANREG 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U5M31.2e-8398.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BZG41.0e-0838.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LW636.7e-0542.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181550 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0050510.16.51e-10898.19hypothetical protein E6C27_scaffold175G001530 [Cucumis melo var. makuwa][more]
TYK05133.11.38e-1038.58hypothetical protein E5676_scaffold1769G00370 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011497.1IVF0011497.1mRNA