IVF0011443 (gene) Melon (IVF77) v1

Overview


Name	IVF0011443
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	glycoprotein 3-alpha-L-fucosyltransferase A-like
Location	chr10: 20199491 .. 20200803 (+)
RNA-Seq Expression	IVF0011443
Synteny	IVF0011443

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAGTGGGGCTCCAATGTCGGCCAAGAAAAAATGGTCAAATGCGATGCCTCTGTTCATCGCTCTTGTCGTTGTAGTAGAGATTATCTTTCTTGGTCACCTTGATGTCGCTAAAAATGTAGCTATGTCAATTCATGGGCTGATTTGTTCTATCGTTCGCCGCCTCCTCTTGCACTGATCGACGGAGGTGATGATTTGAATTTCCGGTCCATTGATGGCGATCGAATTTCGGAATTTGGGATTTGTGAGGAGTGGTTGGAGAAAGAAGACGTTGCGACGTATTCTAGGGACTTCCAAAAGGAGCCGATATTGGTTTCTGGGTCTGATGAGGTTTCTTTCCTTTTACCCCTTCACTATGCTTCATTGTCGATTGCATATAAATTATACCTTATGTACTCGTGTACTATTATGATGTACTGCATCGATATGTTATCTAATGTGCTGTTAAGACTTTGTTCTGCATCGACGTAGAAATCCATGCAATGCTACACGTAGCATCTATCGATCATTTCATATGCAAACTTTTCGTTCCATACAAAACGTTTGTTTTCTCATACATTTTGCTTTGCAGTTTAAATCTTCATGTATGTCGTTTTTTTTGTTTGTATTGAAGTATTTTGTTGATACTGGATATAGGGGAACTAGTTTTGTTGTTATTTTTGTTGATACTGGATATAGGGGAACTAGTTTTGTTGTTATTTTGTTGATACTGAATATAGGTAAACTAGTTTTGTTGATAGTGGATATAGGTAAACTAGTTTTGATATGGTACACCTTTAGACTACAAATATATTTTGTTTATATCTATATTGATGGAAAGTTTAGGCTATTGTTAGAAGTTTATGTTTATATCGACATTTATAGTGGATATAGGTGAACTAGTTAGGGGTTCAAGTTTATGTTCAAAACTTCATGGAAGGAGAAAGAATGATGAGAATCTTCAACTACAAAACCCAAAAGCATAAATCTGTAATGTTTTTTCTTCTCCACTTTTAGGTTTTTCGTTTGCTTTAGCCTATGTTCTCTTAAAGAAGTTATTGATTTTGTTTAAAACAAAGTTTTTTTTTTTTAAAAAAAGGGCATTTAAGTACTATGACATCTCATGTGTTCTCTCTTATTCTTTTGATAGCCGTGTGAGCAACCATCCACTAATTCTTAATGTATGTTTGTAAGCGTCCAATACTTCATAGAGATCCTACATTTTGTGTCTATTTTAGGGACATAATTCTAGTATCAAAGGTTTTGGACTTAAAGTTAGAGTTCTTAGTTTTAATGTTGTTCTCATTTTGTTTGTAGATTTCAAGAAGTTGA

mRNA sequence

ATGTCCAGTGGGGCTCCAATGTCGGCCAAGAAAAAATGGTCAAATGCGATGCCTCTGTTCATCGCTCTTGTCGTTGTAGTAGAGATTATCTTTCTTGGTCACCTTGATGTCGCTAAAAATGTAGCTATGTCAATTCATGGGCTGATTTGTGATGATTTGAATTTCCGGTCCATTGATGGCGATCGAATTTCGGAATTTGGGATTTGTGAGGAGTGGTTGGAGAAAGAAGACGTTGCGACGTATTCTAGGGACTTCCAAAAGGAGCCGATATTGGTTTCTGGGTCTGATGAGATTTCAAGAAGTTGA

Coding sequence (CDS)

ATGTCCAGTGGGGCTCCAATGTCGGCCAAGAAAAAATGGTCAAATGCGATGCCTCTGTTCATCGCTCTTGTCGTTGTAGTAGAGATTATCTTTCTTGGTCACCTTGATGTCGCTAAAAATGTAGCTATGTCAATTCATGGGCTGATTTGTGATGATTTGAATTTCCGGTCCATTGATGGCGATCGAATTTCGGAATTTGGGATTTGTGAGGAGTGGTTGGAGAAAGAAGACGTTGCGACGTATTCTAGGGACTTCCAAAAGGAGCCGATATTGGTTTCTGGGTCTGATGAGATTTCAAGAAGTTGA

Protein sequence

MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMSIHGLICDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEISRS

Homology

[Close]

BLAST of IVF0011443 vs. ExPASy Swiss-Prot
Match: Q9LJK1 (Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana OX=3702 GN=FUT11 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-11
Identity = 44/102 (43.14%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 2   SSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMSIHGLICDDLNFRSIDGD 61
           SS +P S K+K S  +P+ +ALVV++EI FL  LD A  V    H        F     D
Sbjct: 29  SSSSPSSFKRKVSTFLPICVALVVIIEIGFLCRLDNASLVDTLTH-------FFTKSSSD 88

Query: 62  RISEFGI--CEEWLEKEDVATYSRDFQKEPILVSGSDEISRS 102
                GI  C+EWLE+ D  TYSRDF K+PI +SGS++  +S
Sbjct: 89  LKVGSGIEKCQEWLERVDSVTYSRDFTKDPIFISGSNKDFKS 123

[Close]

BLAST of IVF0011443 vs. ExPASy Swiss-Prot
Match: Q9FX97 (Putative fucosyltransferase-like protein OS=Arabidopsis thaliana OX=3702 GN=FUT12 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 43/102 (42.16%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 2   SSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMSIHGLICDDLNFRS---- 61
           SS    S K+K SN +PL +ALVV+ EI FLG LD    V              +S    
Sbjct: 29  SSSPSSSIKRKLSNLLPLCVALVVIAEIGFLGRLDKVALVDTLTDFFTQSPSLSQSPPAR 88

Query: 62  IDGDRISEF--GICEEWLEKEDVATYSRDFQKEPILVSGSDE 98
            D  +I  F    CEEWL +ED  TYSRDF K+PI +SG ++
Sbjct: 89  SDRKKIGLFTDRSCEEWLMREDSVTYSRDFTKDPIFISGGEK 130

[Close]

BLAST of IVF0011443 vs. ExPASy TrEMBL
Match: A0A1S3BPF1 (putative fucosyltransferase-like protein OS=Cucumis melo OX=3656 GN=LOC103491901 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.6e-40
Identity = 96/117 (82.05%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAM----------------S 60
           MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAM                 
Sbjct: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMVNSWADLFYRSPPPLAL 60

Query: 61  IHGLICDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEISRS 102
           I G   DDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEISRS
Sbjct: 61  IDG--GDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEISRS 115

[Close]

BLAST of IVF0011443 vs. ExPASy TrEMBL
Match: A0A5A7U8B8 (Putative fucosyltransferase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1591G00390 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 93/115 (80.87%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAM----------------S 60
           MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAM                 
Sbjct: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMVNSWADLFYRSPPPLAL 60

Query: 61  IHGLICDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEIS 100
           I G   DDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDE+S
Sbjct: 61  IDG--GDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEVS 113

[Close]

BLAST of IVF0011443 vs. ExPASy TrEMBL
Match: A0A5D3CBG3 (Putative fucosyltransferase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118G00280 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.1e-38
Identity = 92/113 (81.42%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAM----------------S 60
           MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAM                 
Sbjct: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMVNSWADLFYRSPPPLAL 60

Query: 61  IHGLICDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDE 98
           I G   DDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDE
Sbjct: 61  IDG--GDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDE 111

[Close]

BLAST of IVF0011443 vs. ExPASy TrEMBL
Match: A0A5A7T6K9 (Glycoprotein 3-alpha-L-fucosyltransferase A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold379G00190 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.6e-32
Identity = 83/117 (70.94%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAM----------------S 60
           +SSGAPM AKKKWSNAMPLFIALVVV EIIFLG LDVAKNVAM                 
Sbjct: 21  VSSGAPMPAKKKWSNAMPLFIALVVVAEIIFLGRLDVAKNVAMVDSWADLFYRSPPPLAL 80

Query: 61  IHGLICDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEISRS 102
           I G   DDLN R IDGDRISE GICEEWLEKED  TYSRDFQK+PILVSGSDE  +S
Sbjct: 81  IDG--GDDLNSRFIDGDRISELGICEEWLEKEDAVTYSRDFQKDPILVSGSDEGRKS 135

[Close]

BLAST of IVF0011443 vs. ExPASy TrEMBL
Match: A0A5D3CRD4 (Glycoprotein 3-alpha-L-fucosyltransferase A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001630 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.6e-32
Identity = 83/117 (70.94%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAM----------------S 60
           +SSGAPM AKKKWSNAMPLFIALVVV EIIFLG LDVAKNVAM                 
Sbjct: 21  VSSGAPMPAKKKWSNAMPLFIALVVVAEIIFLGRLDVAKNVAMVDSWADLFYRSPPPLAL 80

Query: 61  IHGLICDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEISRS 102
           I G   DDLN R IDGDRISE GICEEWLEKED  TYSRDFQK+PILVSGSDE  +S
Sbjct: 81  IDG--GDDLNSRFIDGDRISELGICEEWLEKEDAVTYSRDFQKDPILVSGSDEGRKS 135

[Close]

BLAST of IVF0011443 vs. NCBI nr
Match: XP_008450236.2 (PREDICTED: putative fucosyltransferase-like protein [Cucumis melo])

HSP 1 Score: 170 bits (430), Expect = 1.90e-52
Identity = 96/117 (82.05%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMS---------------- 60
           MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAM                 
Sbjct: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMVNSWADLFYRSPPPLAL 60

Query: 61  IHGLICDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEISRS 101
           I G   DDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEISRS
Sbjct: 61  IDG--GDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEISRS 115

[Close]

BLAST of IVF0011443 vs. NCBI nr
Match: KAA0049841.1 (putative fucosyltransferase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 166 bits (420), Expect = 9.28e-51
Identity = 93/115 (80.87%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMS---------------- 60
           MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAM                 
Sbjct: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMVNSWADLFYRSPPPLAL 60

Query: 61  IHGLICDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEIS 99
           I G   DDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDE+S
Sbjct: 61  IDG--GDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEVS 113

[Close]

BLAST of IVF0011443 vs. NCBI nr
Match: TYK08680.1 (putative fucosyltransferase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (413), Expect = 3.79e-49
Identity = 92/113 (81.42%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMS---------------- 60
           MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAM                 
Sbjct: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMVNSWADLFYRSPPPLAL 60

Query: 61  IHGLICDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDE 97
           I G   DDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDE
Sbjct: 61  IDG--GDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDE 111

[Close]

BLAST of IVF0011443 vs. NCBI nr
Match: TYK13960.1 (glycoprotein 3-alpha-L-fucosyltransferase A-like [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 1.46e-39
Identity = 83/117 (70.94%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMS---------------- 60
           +SSGAPM AKKKWSNAMPLFIALVVV EIIFLG LDVAKNVAM                 
Sbjct: 21  VSSGAPMPAKKKWSNAMPLFIALVVVAEIIFLGRLDVAKNVAMVDSWADLFYRSPPPLAL 80

Query: 61  IHGLICDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEISRS 101
           I G   DDLN R IDGDRISE GICEEWLEKED  TYSRDFQK+PILVSGSDE  +S
Sbjct: 81  IDG--GDDLNSRFIDGDRISELGICEEWLEKEDAVTYSRDFQKDPILVSGSDEGRKS 135

[Close]

BLAST of IVF0011443 vs. NCBI nr
Match: XP_008456133.1 (PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Cucumis melo] >KAA0037115.1 glycoprotein 3-alpha-L-fucosyltransferase A-like [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 3.94e-38
Identity = 83/117 (70.94%), Postives = 86/117 (73.50%), Query Frame = 0


Query: 1   MSSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMS---------------- 60
           +SSGAPM AKKKWSNAMPLFIALVVV EIIFLG LDVAKNVAM                 
Sbjct: 21  VSSGAPMPAKKKWSNAMPLFIALVVVAEIIFLGRLDVAKNVAMVDSWADLFYRSPPPLAL 80

Query: 61  IHGLICDDLNFRSIDGDRISEFGICEEWLEKEDVATYSRDFQKEPILVSGSDEISRS 101
           I G   DDLN R IDGDRISE GICEEWLEKED  TYSRDFQK+PILVSGSDE  +S
Sbjct: 81  IDG--GDDLNSRFIDGDRISELGICEEWLEKEDAVTYSRDFQKDPILVSGSDEGRKS 135

[Close]

BLAST of IVF0011443 vs. TAIR 10
Match: AT3G19280.1 (fucosyltransferase 11 )

HSP 1 Score: 68.9 bits (167), Expect = 2.6e-12
Identity = 44/102 (43.14%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 2   SSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMSIHGLICDDLNFRSIDGD 61
           SS +P S K+K S  +P+ +ALVV++EI FL  LD A  V    H        F     D
Sbjct: 29  SSSSPSSFKRKVSTFLPICVALVVIIEIGFLCRLDNASLVDTLTH-------FFTKSSSD 88

Query: 62  RISEFGI--CEEWLEKEDVATYSRDFQKEPILVSGSDEISRS 102
                GI  C+EWLE+ D  TYSRDF K+PI +SGS++  +S
Sbjct: 89  LKVGSGIEKCQEWLERVDSVTYSRDFTKDPIFISGSNKDFKS 123

[Close]

BLAST of IVF0011443 vs. TAIR 10
Match: AT1G49710.1 (fucosyltransferase 12 )

HSP 1 Score: 63.9 bits (154), Expect = 8.3e-11
Identity = 43/102 (42.16%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 2   SSGAPMSAKKKWSNAMPLFIALVVVVEIIFLGHLDVAKNVAMSIHGLICDDLNFRS---- 61
           SS    S K+K SN +PL +ALVV+ EI FLG LD    V              +S    
Sbjct: 29  SSSPSSSIKRKLSNLLPLCVALVVIAEIGFLGRLDKVALVDTLTDFFTQSPSLSQSPPAR 88

Query: 62  IDGDRISEF--GICEEWLEKEDVATYSRDFQKEPILVSGSDE 98
            D  +I  F    CEEWL +ED  TYSRDF K+PI +SG ++
Sbjct: 89  SDRKKIGLFTDRSCEEWLMREDSVTYSRDFTKDPIFISGGEK 130

The following BLAST results are available for this feature:

BLAST of IVF0011443 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LJK1	3.6e-11	43.14	Glycoprotein 3-alpha-L-fucosyltransferase A OS=Arabidopsis thaliana OX=3702 GN=F...	[more]
Q9FX97	1.2e-09	42.16	Putative fucosyltransferase-like protein OS=Arabidopsis thaliana OX=3702 GN=FUT1...	[more]

BLAST of IVF0011443 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BPF1	8.6e-40	82.05	putative fucosyltransferase-like protein OS=Cucumis melo OX=3656 GN=LOC103491901...	[more]
A0A5A7U8B8	1.2e-38	80.87	Putative fucosyltransferase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CBG3	8.1e-38	81.42	Putative fucosyltransferase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T6K9	6.6e-32	70.94	Glycoprotein 3-alpha-L-fucosyltransferase A-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3CRD4	6.6e-32	70.94	Glycoprotein 3-alpha-L-fucosyltransferase A-like OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of IVF0011443 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450236.2	1.90e-52	82.05	PREDICTED: putative fucosyltransferase-like protein [Cucumis melo]	[more]
KAA0049841.1	9.28e-51	80.87	putative fucosyltransferase-like protein [Cucumis melo var. makuwa]	[more]
TYK08680.1	3.79e-49	81.42	putative fucosyltransferase-like protein [Cucumis melo var. makuwa]	[more]
TYK13960.1	1.46e-39	70.94	glycoprotein 3-alpha-L-fucosyltransferase A-like [Cucumis melo var. makuwa]	[more]
XP_008456133.1	3.94e-38	70.94	PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Cucumis melo] >KAA0...	[more]

BLAST of IVF0011443 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19280.1	2.6e-12	43.14	fucosyltransferase 11	[more]
AT1G49710.1	8.3e-11	42.16	fucosyltransferase 12	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011443.1	IVF0011443.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0036065	fucosylation
biological_process	GO:0006486	protein glycosylation
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008417	fucosyltransferase activity