IVF0011438 (gene) Melon (IVF77) v1

Overview


Name	IVF0011438
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 27328593 .. 27329006 (+)
RNA-Seq Expression	IVF0011438
Synteny	IVF0011438

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTCTCCTCCTCCTCCTCTCCGAACTCCTCCGTCACCACAACACCAATCCCGACTACTGGCTCACTCTTCCTTCTCCACCAACCACGATGCCGTCTTCTTCTGCCGATAATGGAACGTCGGAGTGCAGTTACGGCAATAATTATAAGACCCGGATCTGTGCCGATGAGAATGAAATGGATGAGTTTCTCAAGGAATCTAGGGTTTGTGTTGATTTGGTTTGGCCCTAATTTTCAATTTCGATTTGTTTCTCAGGATTTGGGTTTCTTCTTTTCTTGTGTTTTTGTTTGTGTTGTAATACATACTCGAAGGAAGGTTTCGAGTTCAAGAGAGAGGAAGAAAATTCCAATTGGGTTTGTAGAGATAATGGTGAAACAGAGTACGATTATCTCAACGCCTTTGCTCCGTAG

mRNA sequence

ATGGCCTCTCTCCTCCTCCTCCTCTCCGAACTCCTCCGTCACCACAACACCAATCCCGACTACTGGCTCACTCTTCCTTCTCCACCAACCACGATGCCGTCTTCTTCTGCCGATAATGGAACGTCGGAGTGCAGTTACGGCAATAATTATAAGACCCGGATCTGTGCCGATGAGAATGAAATGGATGAGTTTCTCAAGGAATCTAGGGTTTGTGTTGATTTGGAAGGTTTCGAGTTCAAGAGAGAGGAAGAAAATTCCAATTGGGTTTGTAGAGATAATGGTGAAACAGAGTACGATTATCTCAACGCCTTTGCTCCGTAG

Coding sequence (CDS)

ATGGCCTCTCTCCTCCTCCTCCTCTCCGAACTCCTCCGTCACCACAACACCAATCCCGACTACTGGCTCACTCTTCCTTCTCCACCAACCACGATGCCGTCTTCTTCTGCCGATAATGGAACGTCGGAGTGCAGTTACGGCAATAATTATAAGACCCGGATCTGTGCCGATGAGAATGAAATGGATGAGTTTCTCAAGGAATCTAGGGTTTGTGTTGATTTGGAAGGTTTCGAGTTCAAGAGAGAGGAAGAAAATTCCAATTGGGTTTGTAGAGATAATGGTGAAACAGAGTACGATTATCTCAACGCCTTTGCTCCGTAG

Protein sequence

MASLLLLLSELLRHHNTNPDYWLTLPSPPTTMPSSSADNGTSECSYGNNYKTRICADENEMDEFLKESRVCVDLEGFEFKREEENSNWVCRDNGETEYDYLNAFAP

Homology

[Close]

BLAST of IVF0011438 vs. ExPASy TrEMBL
Match: A0A0A0LHI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.3e-24
Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1  MASLLLLLSELLRHHNTNPDYWLTLPSPPTTMPSSSADNGT--------SECSYGNNYKT 60
          MASLLLLLS+LLRHH+TNPDY LTLPSPPTTMPSSS+ +          S+C Y NNYKT
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICADENEMDEFLKESRVCVDL 75
          RICADEN MDEFLKESRVCVDL
Sbjct: 61 RICADENVMDEFLKESRVCVDL 82

[Close]

BLAST of IVF0011438 vs. ExPASy TrEMBL
Match: A0A2P5F7L7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_105030 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.1e-08
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 1  MASLLLLLSELLRHHNTNPDYWLTLPSPPTTMPSSSADNGTSECSYGNNY---------- 60
          MASLLLLLSEL+ HHN +PD+W+ L SPP++  SSS+ + +S  S    +          
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPPSSSSSSSSSSSSSSSSCAAAFAASSSTSVSK 60

Query: 61 KTRICADENEMDEFLKESRVCVDL 75
          +T+ C D    +  LKESRVCVDL
Sbjct: 61 ETKKCYDNVSDENDLKESRVCVDL 84

[Close]

BLAST of IVF0011438 vs. ExPASy TrEMBL
Match: A0A2P5AT80 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_302520 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-07
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 1  MASLLLLLSELLRHHNTNPDYWLTLPSPPTTMPSSSADNG-----TSECSYGNNYKTRIC 60
          MASLLLLLSEL+ HHN +PD+W+ L SP ++  SSS+ +       +  S     +T+ C
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPSSSSSSSSSSSSCAAAFAASSSTSPRKETKKC 60

Query: 61 ADENEMDEFLKESRVCVDL 75
           D    +  LKESRVCVDL
Sbjct: 61 HDNVSHENDLKESRVCVDL 79

[Close]

BLAST of IVF0011438 vs. NCBI nr
Match: KAE8651190.1 (hypothetical protein Csa_001669 [Cucumis sativus])

HSP 1 Score: 110 bits (275), Expect = 4.12e-29
Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MASLLLLLSELLRHHNTNPDYWLTLPSPPTTMPSSSADNGT--------SECSYGNNYKT 60
          MASLLLLLS+LLRHH+TNPDY LTLPSPPTTMPSSS+ +          S+C Y NNYKT
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICADENEMDEFLKESRV 70
          RICADEN MDEFLKESR+
Sbjct: 61 RICADENVMDEFLKESRI 78

[Close]

BLAST of IVF0011438 vs. NCBI nr
Match: XP_038904495.1 (uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida])

HSP 1 Score: 83.2 bits (204), Expect = 5.02e-17
Identity = 49/75 (65.33%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1  MASLLLLLSELLRHHNTNPDYWLTLPSPPTTMP--SSSADNGTS----ECSYGNNYKTRI 60
          MASL+LLLSELLRHHNTNPDYWLT+P PP   P  +SS+  G S    E  Y N  K+RI
Sbjct: 1  MASLVLLLSELLRHHNTNPDYWLTIPLPPPPSPPRTSSSVAGKSLLPSERCYSN--KSRI 60

Query: 61 CADENEMDEFLKESR 69
          CADE  +DEFLKESR
Sbjct: 61 CADETVIDEFLKESR 73

[Close]

BLAST of IVF0011438 vs. NCBI nr
Match: PON93800.1 (hypothetical protein TorRG33x02_105030 [Trema orientale])

HSP 1 Score: 67.8 bits (164), Expect = 2.94e-12
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 1  MASLLLLLSELLRHHNTNPDYWLTLPSPPTTMPSSSADNGTSECSYGNNY---------- 60
          MASLLLLLSEL+ HHN +PD+W+ L SPP++  SSS+ + +S  S    +          
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPPSSSSSSSSSSSSSSSSCAAAFAASSSTSVSK 60

Query: 61 KTRICADENEMDEFLKESRVCVDL 74
          +T+ C D    +  LKESRVCVDL
Sbjct: 61 ETKKCYDNVSDENDLKESRVCVDL 84

[Close]

BLAST of IVF0011438 vs. NCBI nr
Match: PON39745.1 (hypothetical protein PanWU01x14_302520 [Parasponia andersonii])

HSP 1 Score: 64.3 bits (155), Expect = 5.94e-11
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 1  MASLLLLLSELLRHHNTNPDYWLTLPSPPTTMPSSSADNG-----TSECSYGNNYKTRIC 60
          MASLLLLLSEL+ HHN +PD+W+ L SP ++  SSS+ +       +  S     +T+ C
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPSSSSSSSSSSSSCAAAFAASSSTSPRKETKKC 60

Query: 61 ADENEMDEFLKESRVCVDL 74
           D    +  LKESRVCVDL
Sbjct: 61 HDNVSHENDLKESRVCVDL 79

[Close]

BLAST of IVF0011438 vs. NCBI nr
Match: KAG6580906.1 (hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 3.06e-10
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 1  MASLLLLLSELLRHHNTNPDYWLTLPSPPTTMPSSSADNGTSE 43
          MASL+LLLSEL+RHHNTNPDYWLTLP P  T P  S+D+  ++
Sbjct: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPSPTPPPPSSDSAVAK 43

The following BLAST results are available for this feature:

BLAST of IVF0011438 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011438 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHI4	5.3e-24	75.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1	[more]
A0A2P5F7L7	3.1e-08	46.43	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_105030 PE=4 SV...	[more]
A0A2P5AT80	3.5e-07	46.84	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_302520 PE...	[more]

BLAST of IVF0011438 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651190.1	4.12e-29	73.08	hypothetical protein Csa_001669 [Cucumis sativus]	[more]
XP_038904495.1	5.02e-17	65.33	uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida]	[more]
PON93800.1	2.94e-12	46.43	hypothetical protein TorRG33x02_105030 [Trema orientale]	[more]
PON39745.1	5.94e-11	46.84	hypothetical protein PanWU01x14_302520 [Parasponia andersonii]	[more]
KAG6580906.1	3.06e-10	67.44	hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of IVF0011438 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011438.2	IVF0011438.2	mRNA