IVF0011306 (gene) Melon (IVF77) v1

Overview
NameIVF0011306
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr08: 1802070 .. 1802480 (+)
RNA-Seq ExpressionIVF0011306
SyntenyIVF0011306
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCATAGTATACAAGGCTTGGGTGACAAGAACCAGGCTCTCCTTGCTAAGTGGATTTAGAGATATTATCCTGAAGAATAGGTATTCTGGAGACATAGAATTGAGAAACAACTTAGACTCTGGGATTTGATATGTACCTAAAACTCTCAACCCCACTCTACTCTCTTCTAGGAATGTTCAAAAGACTGGTGACCCGACAAACCCTCAACCCAACCTAGCCCGTTCTCATTTTTAGTGCTAAATTAATATAAGCTGCGGTTGGCATCTATTGCTGAAGTTAGGGAATGGAAGAAAGCCATTGGCGAGTTCAAAAGCCGTTCCTATCAACCACGAAACCTTTGTCAAAATCAGATTGAGAAGCTTGTTTGAGCAGTCAGCTAAGACAATTTGCCAGAAACCCAAATAA

mRNA sequence

ATGGAGGCCATAGTATACAAGGCTTGGGTGACAAGAACCAGGCTCTCCTTGCTAAGTGGATTTAGAGATATTATCCTGAAGAATAGCTGCGGTTGGCATCTATTGCTGAAGTTAGGGAATGGAAGAAAGCCATTGGCGAGTTCAAAAGCCGTTCCTATCAACCACGAAACCTTTGTCAAAATCAGATTGAGAAGCTTGTTTGAGCAGTCAGCTAAGACAATTTGCCAGAAACCCAAATAA

Coding sequence (CDS)

ATGGAGGCCATAGTATACAAGGCTTGGGTGACAAGAACCAGGCTCTCCTTGCTAAGTGGATTTAGAGATATTATCCTGAAGAATAGCTGCGGTTGGCATCTATTGCTGAAGTTAGGGAATGGAAGAAAGCCATTGGCGAGTTCAAAAGCCGTTCCTATCAACCACGAAACCTTTGTCAAAATCAGATTGAGAAGCTTGTTTGAGCAGTCAGCTAAGACAATTTGCCAGAAACCCAAATAA

Protein sequence

MEAIVYKAWVTRTRLSLLSGFRDIILKNSCGWHLLLKLGNGRKPLASSKAVPINHETFVKIRLRSLFEQSAKTICQKPK
Homology
[Close]
BLAST of IVF0011306 vs. ExPASy TrEMBL
Match: A0A0A0KK79 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518010 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 62/95 (65.26%), Postives = 65/95 (68.42%), Query Frame = 0 

Query: 1  MEAIVYKAWVTR-TRLSLLSGFRDIILKN---------------SCGWHLLLKLGNGRKP 60
          MEAI YKAWVTR TRLSLLSGFRDII KN                  W   LKLGNG+ P
Sbjct: 1  MEAIAYKAWVTRTTRLSLLSGFRDIIKKNRHYGENTIEKQLRPWDSNWE-ELKLGNGKMP 60

Query: 61 LASSKAVPINHETFVKIRLRSLFEQSAKTICQKPK 80
          L +SKA+PINHETFVKIRLRSLFEQS   I QKPK
Sbjct: 61 LVNSKAIPINHETFVKIRLRSLFEQSTNAIYQKPK 94

[Close]
BLAST of IVF0011306 vs. NCBI nr
Match: KGN49244.1 (hypothetical protein Csa_004144 [Cucumis sativus])

HSP 1 Score: 105 bits (263), Expect = 1.16e-27
Identity = 62/95 (65.26%), Postives = 65/95 (68.42%), Query Frame = 0 

Query: 1  MEAIVYKAWVTRT-RLSLLSGFRDIILKN---------------SCGWHLLLKLGNGRKP 60
          MEAI YKAWVTRT RLSLLSGFRDII KN                  W  L KLGNG+ P
Sbjct: 1  MEAIAYKAWVTRTTRLSLLSGFRDIIKKNRHYGENTIEKQLRPWDSNWEEL-KLGNGKMP 60

Query: 61 LASSKAVPINHETFVKIRLRSLFEQSAKTICQKPK 79
          L +SKA+PINHETFVKIRLRSLFEQS   I QKPK
Sbjct: 61 LVNSKAIPINHETFVKIRLRSLFEQSTNAIYQKPK 94

The following BLAST results are available for this feature:
BLAST of IVF0011306 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011306 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK791.2e-2065.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518010 PE=4 SV=1[more]
BLAST of IVF0011306 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49244.11.16e-2765.26hypothetical protein Csa_004144 [Cucumis sativus][more]
BLAST of IVF0011306 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011306.1IVF0011306.1mRNA