IVF0011211 (gene) Melon (IVF77) v1

Overview


Name	IVF0011211
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr01: 15524896 .. 15525321 (-)
RNA-Seq Expression	IVF0011211
Synteny	IVF0011211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGATGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATGTGGCGCTCGAGCAAACAAACGAGCAACTCAGGGAGATTGCGCAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAAATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

mRNA sequence

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGATGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATGTGGCGCTCGAGCAAACAAACGAGCAACTCAGGGAGATTGCGCAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAAATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

Coding sequence (CDS)

ATGGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGATGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGAGCTTGAAGCGATACATGTGGCGCTCGAGCAAACAAACGAGCAACTCAGGGAGATTGCGCAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAAATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTCCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGCTTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

Protein sequence

MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALEQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

Homology

[Close]

BLAST of IVF0011211 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.9e-71
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 225

Query: 61  EQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           +QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of IVF0011211 vs. ExPASy TrEMBL
Match: A0A5A7UH50 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002490 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 5.9e-71
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL
Sbjct: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 60

Query: 61  EQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           +QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 61  DQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 121 VLMPEDEREGFCRVLLRDIER 141

[Close]

BLAST of IVF0011211 vs. ExPASy TrEMBL
Match: A0A5D3BCN9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001070 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.3e-70
Identity = 139/141 (98.58%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIH+AL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHLAL 225

Query: 61  EQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           +QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of IVF0011211 vs. ExPASy TrEMBL
Match: A0A5A7T9G6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002710 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.7e-70
Identity = 139/141 (98.58%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 225

Query: 61  EQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           +QTNEQLREIAQWPARNLANDNHVRTEFFRILR+MPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLREIAQWPARNLANDNHVRTEFFRILRKMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of IVF0011211 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.6e-70
Identity = 137/141 (97.16%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRAS+GRTGSSGSKRKRGSQRDFELEAIH+AL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 225

Query: 61  EQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           +QTNEQLREIA+WPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 142
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of IVF0011211 vs. NCBI nr
Match: KAA0053857.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 277 bits (709), Expect = 6.54e-94
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL
Sbjct: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 60

Query: 61  EQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           +QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 61  DQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 121 VLMPEDEREGFCRVLLRDIER 141

[Close]

BLAST of IVF0011211 vs. NCBI nr
Match: KAA0031555.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0043921.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047622.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049406.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 277 bits (709), Expect = 1.68e-91
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 225

Query: 61  EQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           +QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of IVF0011211 vs. NCBI nr
Match: KAA0065692.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 273 bits (699), Expect = 2.47e-91
Identity = 137/141 (97.16%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRAS+GRTGSSGSKRKRGSQRDFELEAIH+AL
Sbjct: 72  MGDGNEDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL 131

Query: 61  EQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           +QTNEQLREIA+WPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 132 DQTNEQLREIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 191

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 192 VLMPEDEREGFCRVLLRDIER 212

[Close]

BLAST of IVF0011211 vs. NCBI nr
Match: TYJ96194.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97116.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01046.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK12167.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 276 bits (706), Expect = 4.80e-91
Identity = 139/141 (98.58%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIH+AL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHLAL 225

Query: 61  EQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           +QTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of IVF0011211 vs. NCBI nr
Match: KAA0038065.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 276 bits (705), Expect = 6.81e-91
Identity = 139/141 (98.58%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 60
           MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL
Sbjct: 166 MGDGNEDFPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVAL 225

Query: 61  EQTNEQLREIAQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 120
           +QTNEQLREIAQWPARNLANDNHVRTEFFRILR+MPELTSLDRALLQRHLLSRMDDLRGF
Sbjct: 226 DQTNEQLREIAQWPARNLANDNHVRTEFFRILRKMPELTSLDRALLQRHLLSRMDDLRGF 285

Query: 121 VLMPEDEREGFCRVLLRDIER 141
           VLMPEDEREGFCRVLLRDIER
Sbjct: 286 VLMPEDEREGFCRVLLRDIER 306

The following BLAST results are available for this feature:

BLAST of IVF0011211 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWL2	5.9e-71	99.29	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UH50	5.9e-71	99.29	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BCN9	1.3e-70	98.58	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T9G6	1.7e-70	98.58	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TRV1	8.6e-70	97.16	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0011211 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053857.1	6.54e-94	99.29	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031555.1	1.68e-91	99.29	retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon...	[more]
KAA0065692.1	2.47e-91	97.16	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ96194.1	4.80e-91	98.58	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon p...	[more]
KAA0038065.1	6.81e-91	98.58	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011211 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011211.2	IVF0011211.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane