IVF0011104 (gene) Melon (IVF77) v1

Overview


Name	IVF0011104
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr04: 13516081 .. 13516389 (+)
RNA-Seq Expression	IVF0011104
Synteny	IVF0011104

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATATCGGCATTTGAAACAGGATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTCGAGACAGGATATTACAATTCAGATGCAGGTTCATCATCATCAAACTTTGGGCAAGAATACTATGATTTAAGGCCAATCCATCATCTTCATACATGCGTGGTCACGGGTGCTGTCGTGGAGAACGTAACGAATATTTATAGTACGAAGTGCCTGCAGCAGTACCAGAGGAACCAGATGAGCAACAACAACAAAAGAATTAGAAGGAACTACAACAACAAAGAATGCAGAGCCGATGACGACAACTAG

mRNA sequence

ATGATGATATCGGCATTTGAAACAGGATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTCGAGACAGGATATTACAATTCAGATGCAGGTTCATCATCATCAAACTTTGGGCAAGAATACTATGATTTAAGGCCAATCCATCATCTTCATACATGCGTGGTCACGGGTGCTGTCGTGGAGAACGTAACGAATATTTATAGTACGAAGTGCCTGCAGCAGTACCAGAGGAACCAGATGAGCAACAACAACAAAAGAATTAGAAGGAACTACAACAACAAAGAATGCAGAGCCGATGACGACAACTAG

Coding sequence (CDS)

ATGATGATATCGGCATTTGAAACAGGATATTATGATTTAGGAGTCGGTCAATCGTCAGACTTCGAGACAGGATATTACAATTCAGATGCAGGTTCATCATCATCAAACTTTGGGCAAGAATACTATGATTTAAGGCCAATCCATCATCTTCATACATGCGTGGTCACGGGTGCTGTCGTGGAGAACGTAACGAATATTTATAGTACGAAGTGCCTGCAGCAGTACCAGAGGAACCAGATGAGCAACAACAACAAAAGAATTAGAAGGAACTACAACAACAAAGAATGCAGAGCCGATGACGACAACTAG

Protein sequence

MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN

Homology

[Close]

BLAST of IVF0011104 vs. ExPASy TrEMBL
Match: A0A5A7T3K7 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002820 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 10  YYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYST 69
           YYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYST
Sbjct: 16  YYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYST 75

Query: 70  KCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN 103
           KCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN
Sbjct: 76  KCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN 108

[Close]

BLAST of IVF0011104 vs. ExPASy TrEMBL
Match: A0A5A7U558 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00220 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.5e-10
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1   MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL 45
           MM+SAF T YYDLGVGQSSDF TGYYNS+A  SSSNFGQ+YYDL
Sbjct: 197 MMMSAFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQYYDL 240

[Close]

BLAST of IVF0011104 vs. ExPASy TrEMBL
Match: A0A5A7T6Q6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00300 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.1e-09
Identity = 49/104 (47.12%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 1   MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL--RPIHHLHTCVVTGA 60
           MM+  F T YYDLGVGQSSDF   YYNS+AG SS++FGQ+YYDL   P          G 
Sbjct: 396 MMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGR 455

Query: 61  VVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN 103
              N    Y        Q ++     + IRR YNNKE R DDDN
Sbjct: 456 GEHNEYLYYEVPTTVPKQSDE--QQQQEIRRKYNNKEFRVDDDN 497

[Close]

BLAST of IVF0011104 vs. ExPASy TrEMBL
Match: A0A5D3CHF6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001150 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.1e-09
Identity = 49/104 (47.12%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 1   MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL--RPIHHLHTCVVTGA 60
           MM+  F T YYDLGVGQSSDF   YYNS+AG SS++FGQ+YYDL   P          G 
Sbjct: 199 MMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGR 258

Query: 61  VVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN 103
              N    Y        Q ++     + IRR YNNKE R DDDN
Sbjct: 259 GEHNEYLYYEVPTTVPKQSDE--QQQQEIRRKYNNKEFRVDDDN 300

[Close]

BLAST of IVF0011104 vs. ExPASy TrEMBL
Match: A0A5D3CT32 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00900 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.0e-08
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 1   MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL 45
           MM+  F T YYD  VGQSSDFE GYYNS+AG SS+NFGQ+YYDL
Sbjct: 687 MMMPTFGTTYYDSKVGQSSDFERGYYNSEAGQSSTNFGQQYYDL 730

[Close]

BLAST of IVF0011104 vs. NCBI nr
Match: KAA0038072.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 188 bits (478), Expect = 7.59e-60
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 10  YYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYST 69
           YYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYST
Sbjct: 16  YYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDLRPIHHLHTCVVTGAVVENVTNIYST 75

Query: 70  KCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN 102
           KCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN
Sbjct: 76  KCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN 108

[Close]

BLAST of IVF0011104 vs. NCBI nr
Match: KAA0050408.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYJ97999.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.49e-13
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1   MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL 44
           MM+SAF T YYDLGVGQSSDF TGYYNS+A  SSSNFGQ+YYDL
Sbjct: 197 MMMSAFGTTYYDLGVGQSSDFGTGYYNSEASPSSSNFGQQYYDL 240

[Close]

BLAST of IVF0011104 vs. NCBI nr
Match: TYK09816.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 5.51e-12
Identity = 49/104 (47.12%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 1   MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL--RPIHHLHTCVVTGA 60
           MM+  F T YYDLGVGQSSDF   YYNS+AG SS++FGQ+YYDL   P          G 
Sbjct: 199 MMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGR 258

Query: 61  VVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN 102
              N    Y        Q ++     + IRR YNNKE R DDDN
Sbjct: 259 GEHNEYLYYEVPTTVPKQSDEQQQ--QEIRRKYNNKEFRVDDDN 300

[Close]

BLAST of IVF0011104 vs. NCBI nr
Match: KAA0037866.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 8.39e-12
Identity = 49/104 (47.12%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 1   MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL--RPIHHLHTCVVTGA 60
           MM+  F T YYDLGVGQSSDF   YYNS+AG SS++FGQ+YYDL   P          G 
Sbjct: 396 MMMPTFGTTYYDLGVGQSSDFGRVYYNSEAGPSSTDFGQQYYDLGSNPSSSYMHGHGRGR 455

Query: 61  VVENVTNIYSTKCLQQYQRNQMSNNNKRIRRNYNNKECRADDDN 102
              N    Y        Q ++     + IRR YNNKE R DDDN
Sbjct: 456 GEHNEYLYYEVPTTVPKQSDEQQQ--QEIRRKYNNKEFRVDDDN 497

[Close]

BLAST of IVF0011104 vs. NCBI nr
Match: KAA0062959.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.46e-11
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 1  MMISAFETGYYDLGVGQSSDFETGYYNSDAGSSSSNFGQEYYDL 44
          MM+SAF T YYD  VGQSSDF T YYNS+AG SSSNF Q+YYDL
Sbjct: 1  MMMSAFGTTYYDSEVGQSSDFRTRYYNSEAGPSSSNFEQQYYDL 44

The following BLAST results are available for this feature:

BLAST of IVF0011104 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011104 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T3K7	1.5e-44	100.00	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7U558	2.5e-10	81.82	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7T6Q6	6.1e-09	47.12	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CHF6	6.1e-09	47.12	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CT32	3.0e-08	72.73	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of IVF0011104 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038072.1	7.59e-60	100.00	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0050408.1	1.49e-13	81.82	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK09816.1	5.51e-12	47.12	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0037866.1	8.39e-12	47.12	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0062959.1	1.46e-11	75.00	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of IVF0011104 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011104.1	IVF0011104.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
molecular_function	GO:0008270	zinc ion binding