IVF0011085 (gene) Melon (IVF77) v1

Overview
NameIVF0011085
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCACTA en-spm transposon protein
Locationchr04: 20080101 .. 20080331 (+)
RNA-Seq ExpressionIVF0011085
SyntenyIVF0011085
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATGTGCCAAAAGTGGACAATGTTTTGATGAGGACCTGAATGTACTAGAAATCGTTATCAACCATCAAGTGGATGAGCACATCGAGAATGACACTCTATGCAAGACTGACGTTGGTCTCACAATCGTTGAAGGATCAATTGTGTGTCATGTCACTGACGACTTCATCGTCGATGTAGATGAACACTTGTCACATGCAAGCGGAACAAGCAACGACGATGAATTATAG

mRNA sequence

ATGGGATGTGCCAAAAGTGGACAATGTTTTGATGAGGACCTGAATGTACTAGAAATCGTTATCAACCATCAAGTGGATGAGCACATCGAGAATGACACTCTATGCAAGACTGACGTTGGTCTCACAATCGTTGAAGGATCAATTGTGTGTCATGTCACTGACGACTTCATCGTCGATGTAGATGAACACTTGTCACATGCAAGCGGAACAAGCAACGACGATGAATTATAG

Coding sequence (CDS)

ATGGGATGTGCCAAAAGTGGACAATGTTTTGATGAGGACCTGAATGTACTAGAAATCGTTATCAACCATCAAGTGGATGAGCACATCGAGAATGACACTCTATGCAAGACTGACGTTGGTCTCACAATCGTTGAAGGATCAATTGTGTGTCATGTCACTGACGACTTCATCGTCGATGTAGATGAACACTTGTCACATGCAAGCGGAACAAGCAACGACGATGAATTATAG

Protein sequence

MGCAKSGQCFDEDLNVLEIVINHQVDEHIENDTLCKTDVGLTIVEGSIVCHVTDDFIVDVDEHLSHASGTSNDDEL
Homology
[Close]
BLAST of IVF0011085 vs. ExPASy TrEMBL
Match: A0A5A7TAT1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00630 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.8e-20
Identity = 50/65 (76.92%), Postives = 60/65 (92.31%), Query Frame = 0 

Query: 11  DEDLNVLEIVINHQVDEHIENDTLCKTDVGLTIVEGSIVCHVTDDFIVDVDEHLSHASGT 70
           +E LNVLEIV+NH++DEHI++DTLC+TD+ LTIVE S+VCHVTDDFI DVDEHLSHAS T
Sbjct: 116 NEHLNVLEIVVNHRLDEHIKDDTLCRTDLDLTIVERSVVCHVTDDFIDDVDEHLSHASET 175

Query: 71  SNDDE 76
           S+DDE
Sbjct: 176 SDDDE 180

[Close]
BLAST of IVF0011085 vs. ExPASy TrEMBL
Match: A0A5A7TVH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00480 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 11 DEDLNVLEIVINHQVDEHIENDTLCKTDVGLTIVEGSIVCHVTDDFIVDVDEHLSHASGT 70
          +EDLN+LEIV++H+VDEHIE+DTLC+TDV  TIV+  +V HVTDDFI DVDEHLSHASGT
Sbjct: 6  NEDLNILEIVVSHRVDEHIEDDTLCRTDVNPTIVKRPVVRHVTDDFISDVDEHLSHASGT 65

Query: 71 SNDDEL 77
          SND+EL
Sbjct: 66 SNDNEL 71

[Close]
BLAST of IVF0011085 vs. ExPASy TrEMBL
Match: A0A5D3BKX3 (Acidic leucine-rich nuclear phosphoprotein 32 family member A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00650 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-18
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 1   MGCAKSGQCFDEDLNVLEIVINHQVDEHIENDTLCKTDVGLTIVEGSIVCHVTDDFIVDV 60
           MG A+      +DLNVLEIV++H+VDEHIE+DTLC+T+V  TIVE S+V HVTD +I +V
Sbjct: 44  MGRAEVDDIESDDLNVLEIVVSHRVDEHIEDDTLCRTNVDPTIVERSVVLHVTDGYIDNV 103

Query: 61  DEHLSHASGTSNDDEL 77
           DEHLSHASGTS++DEL
Sbjct: 104 DEHLSHASGTSDNDEL 119

[Close]
BLAST of IVF0011085 vs. ExPASy TrEMBL
Match: A0A5A7VJE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001560 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.1e-18
Identity = 47/66 (71.21%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 11 DEDLNVLEIVINHQVDEHIENDTLCKTDVGLTIVEGSIVCHVTDDFIVDVDEHLSHASGT 70
          +E+LNVLEI+++H++DEHIE++TLC+TD  LTIVE SIV H+T+DFI DVDEHLSHASG 
Sbjct: 24 NEELNVLEIIVSHRMDEHIEDNTLCRTDFDLTIVERSIVRHITNDFIDDVDEHLSHASGI 83

Query: 71 SNDDEL 77
          S+DDEL
Sbjct: 84 SDDDEL 89

[Close]
BLAST of IVF0011085 vs. ExPASy TrEMBL
Match: A0A5D3DA39 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold604G00240 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17
Identity = 47/66 (71.21%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 11 DEDLNVLEIVINHQVDEHIENDTLCKTDVGLTIVEGSIVCHVTDDFIVDVDEHLSHASGT 70
          +E+LNVLEI+++H++DEHIE++TLC+TDV LTIVE SIV H+T+DFI DVDEHLSHAS  
Sbjct: 29 NEELNVLEIIVSHRMDEHIEDNTLCRTDVDLTIVERSIVHHITNDFIDDVDEHLSHASEI 88

Query: 71 SNDDEL 77
          S+DDEL
Sbjct: 89 SDDDEL 94

[Close]
BLAST of IVF0011085 vs. NCBI nr
Match: KAA0047170.1 (uncharacterized protein E6C27_scaffold83G00450 [Cucumis melo var. makuwa] >TYK01165.1 uncharacterized protein E5676_scaffold109G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 7.66e-28
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 11 DEDLNVLEIVINHQVDEHIENDTLCKTDVGLTIVEGSIVCHVTDDFIVDVDEHLSHASGT 70
          +EDLN+LEIV++H+VDEHIE+DTLC+TDV  TIV+  +V HVTDDFI DVDEHLSHASGT
Sbjct: 6  NEDLNILEIVVSHRVDEHIEDDTLCRTDVNPTIVKRPVVRHVTDDFISDVDEHLSHASGT 65

Query: 71 SNDDEL 76
          SND+EL
Sbjct: 66 SNDNEL 71

[Close]
BLAST of IVF0011085 vs. NCBI nr
Match: KAA0040564.1 (uncharacterized protein E6C27_scaffold262G001340 [Cucumis melo var. makuwa] >TYK05607.1 uncharacterized protein E5676_scaffold98G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (264), Expect = 7.94e-27
Identity = 50/65 (76.92%), Postives = 60/65 (92.31%), Query Frame = 0 

Query: 11  DEDLNVLEIVINHQVDEHIENDTLCKTDVGLTIVEGSIVCHVTDDFIVDVDEHLSHASGT 70
           +E LNVLEIV+NH++DEHI++DTLC+TD+ LTIVE S+VCHVTDDFI DVDEHLSHAS T
Sbjct: 116 NEHLNVLEIVVNHRLDEHIKDDTLCRTDLDLTIVERSVVCHVTDDFIDDVDEHLSHASET 175

Query: 71  SNDDE 75
           S+DDE
Sbjct: 176 SDDDE 180

[Close]
BLAST of IVF0011085 vs. NCBI nr
Match: KAA0067474.1 (uncharacterized protein E6C27_scaffold40G001560 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (248), Expect = 1.72e-25
Identity = 47/66 (71.21%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 11 DEDLNVLEIVINHQVDEHIENDTLCKTDVGLTIVEGSIVCHVTDDFIVDVDEHLSHASGT 70
          +E+LNVLEI+++H++DEHIE++TLC+TD  LTIVE SIV H+T+DFI DVDEHLSHASG 
Sbjct: 24 NEELNVLEIIVSHRMDEHIEDNTLCRTDFDLTIVERSIVRHITNDFIDDVDEHLSHASGI 83

Query: 71 SNDDEL 76
          S+DDEL
Sbjct: 84 SDDDEL 89

[Close]
BLAST of IVF0011085 vs. NCBI nr
Match: KAA0039274.1 (acidic leucine-rich nuclear phosphoprotein 32 family member A-like [Cucumis melo var. makuwa] >TYK00461.1 acidic leucine-rich nuclear phosphoprotein 32 family member A-like [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (250), Expect = 2.00e-25
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 1   MGCAKSGQCFDEDLNVLEIVINHQVDEHIENDTLCKTDVGLTIVEGSIVCHVTDDFIVDV 60
           MG A+      +DLNVLEIV++H+VDEHIE+DTLC+T+V  TIVE S+V HVTD +I +V
Sbjct: 44  MGRAEVDDIESDDLNVLEIVVSHRVDEHIEDDTLCRTNVDPTIVERSVVLHVTDGYIDNV 103

Query: 61  DEHLSHASGTSNDDEL 76
           DEHLSHASGTS++DEL
Sbjct: 104 DEHLSHASGTSDNDEL 119

[Close]
BLAST of IVF0011085 vs. NCBI nr
Match: TYK20436.1 (uncharacterized protein E5676_scaffold604G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 5.68e-25
Identity = 47/66 (71.21%), Postives = 60/66 (90.91%), Query Frame = 0 

Query: 11 DEDLNVLEIVINHQVDEHIENDTLCKTDVGLTIVEGSIVCHVTDDFIVDVDEHLSHASGT 70
          +E+LNVLEI+++H++DEHIE++TLC+TDV LTIVE SIV H+T+DFI DVDEHLSHAS  
Sbjct: 29 NEELNVLEIIVSHRMDEHIEDNTLCRTDVDLTIVERSIVHHITNDFIDDVDEHLSHASEI 88

Query: 71 SNDDEL 76
          S+DDEL
Sbjct: 89 SDDDEL 94

The following BLAST results are available for this feature:
BLAST of IVF0011085 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0011085 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TAT19.8e-2076.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TVH72.2e-1975.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BKX33.1e-1865.79Acidic leucine-rich nuclear phosphoprotein 32 family member A-like OS=Cucumis me... [more]
A0A5A7VJE09.1e-1871.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DA392.0e-1771.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of IVF0011085 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047170.17.66e-2875.76uncharacterized protein E6C27_scaffold83G00450 [Cucumis melo var. makuwa] >TYK01... [more]
KAA0040564.17.94e-2776.92uncharacterized protein E6C27_scaffold262G001340 [Cucumis melo var. makuwa] >TYK... [more]
KAA0067474.11.72e-2571.21uncharacterized protein E6C27_scaffold40G001560 [Cucumis melo var. makuwa][more]
KAA0039274.12.00e-2565.79acidic leucine-rich nuclear phosphoprotein 32 family member A-like [Cucumis melo... [more]
TYK20436.15.68e-2571.21uncharacterized protein E5676_scaffold604G00240 [Cucumis melo var. makuwa][more]
BLAST of IVF0011085 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0011085.1IVF0011085.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0031012 extracellular matrix
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008270 zinc ion binding