IVF0011010 (gene) Melon (IVF77) v1

Overview


Name	IVF0011010
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr10: 14941828 .. 14942016 (+)
RNA-Seq Expression	IVF0011010
Synteny	IVF0011010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGTAGCGAACACGATCGGAGGCGGAGGAGTCGACGACTTCCTCGGATACACGAGATGAAGAGAGAGAGAGCATTGGAGATGACAACTAGCGAACGGTCGGACGACCAATTTGGAGGACCTGTCAGCGGCTGGCCGTGCGCGGACGAAGAACAGGGATGCGGCTACGGAAGACGACAGAGGTGA

mRNA sequence

ATGGCTAGTAGCGAACACGATCGGAGGCGGAGGAGTCGACGACTTCCTCGGATACACGAGATGAAGAGAGAGAGAGCATTGGAGATGACAACTAGCGAACGGTCGGACGACCAATTTGGAGGACCTGTCAGCGGCTGGCCGTGCGCGGACGAAGAACAGGGATGCGGCTACGGAAGACGACAGAGGTGA

Coding sequence (CDS)

ATGGCTAGTAGCGAACACGATCGGAGGCGGAGGAGTCGACGACTTCCTCGGATACACGAGATGAAGAGAGAGAGAGCATTGGAGATGACAACTAGCGAACGGTCGGACGACCAATTTGGAGGACCTGTCAGCGGCTGGCCGTGCGCGGACGAAGAACAGGGATGCGGCTACGGAAGACGACAGAGGTGA

Protein sequence

MASSEHDRRRRSRRLPRIHEMKRERALEMTTSERSDDQFGGPVSGWPCADEEQGCGYGRRQR

Homology

[Close]

BLAST of IVF0011010 vs. ExPASy TrEMBL
Match: A0A5A7TQA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00690 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.6e-04
Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 13 RRLPRIHEMKRERALEMTTSER---------SDDQFGGPVSGWPCADEEQG 55
          RRL R+H MKR +A E+  ++R         SDDQFG PV GWPCAD EQG
Sbjct: 6  RRLARVHGMKRGKASEVAETKREGESVVCAWSDDQFGNPVGGWPCADGEQG 56

[Close]

BLAST of IVF0011010 vs. NCBI nr
Match: KAA0045304.1 (uncharacterized protein E6C27_scaffold316G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 52.4 bits (124), Expect = 3.24e-06
Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 13 RRLPRIHEMKRERALEMTTSER---------SDDQFGGPVSGWPCADEEQG 54
          RRL R+H MKR +A E+  ++R         SDDQFG PV GWPCAD EQG
Sbjct: 6  RRLARVHGMKRGKASEVAETKREGESVVCAWSDDQFGNPVGGWPCADGEQG 56

The following BLAST results are available for this feature:

BLAST of IVF0011010 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQA6	3.6e-04	54.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0011010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045304.1	3.24e-06	54.90	uncharacterized protein E6C27_scaffold316G00690 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011010 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011010.1	IVF0011010.1	mRNA