IVF0011000 (gene) Melon (IVF77) v1

Overview


Name	IVF0011000
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr10: 15886249 .. 15886512 (-)
RNA-Seq Expression	IVF0011000
Synteny	IVF0011000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTAAGCGACGAACACGTGACGGAGGGTAGCGGACCTACATGGCTCGACAGAACACGCTCGACTTCAACGACGAAACGACCATGGAGATACCGAGACGACGGAGCAACGACGAAGGCGAAGATGGAGACCTACCGATGCTTGACGGACGCACGAACGACCAGAGACTTGACGAGAAAGGGAAGAAATGCGGATAAGGTTGAGCGCGGCTGGCTGCCAGGGTTGAGCGGTTCGACGGAGGCAGGCGGCTACGGATTGTGA

mRNA sequence

ATGGCAGTAAGCGACGAACACGTGACGGAGGGTAGCGGACCTACATGGCTCGACAGAACACGCTCGACTTCAACGACGAAACGACCATGGAGATACCGAGACGACGGAGCAACGACGAAGGCGAAGATGGAGACCTACCGATGCTTGACGGACGCACGAACGACCAGAGACTTGACGAGAAAGGGAAGAAATGCGGATAAGGTTGAGCGCGGCTGGCTGCCAGGGTTGAGCGGTTCGACGGAGGCAGGCGGCTACGGATTGTGA

Coding sequence (CDS)

ATGGCAGTAAGCGACGAACACGTGACGGAGGGTAGCGGACCTACATGGCTCGACAGAACACGCTCGACTTCAACGACGAAACGACCATGGAGATACCGAGACGACGGAGCAACGACGAAGGCGAAGATGGAGACCTACCGATGCTTGACGGACGCACGAACGACCAGAGACTTGACGAGAAAGGGAAGAAATGCGGATAAGGTTGAGCGCGGCTGGCTGCCAGGGTTGAGCGGTTCGACGGAGGCAGGCGGCTACGGATTGTGA

Protein sequence

MAVSDEHVTEGSGPTWLDRTRSTSTTKRPWRYRDDGATTKAKMETYRCLTDARTTRDLTRKGRNADKVERGWLPGLSGSTEAGGYGL

Homology

[Close]

BLAST of IVF0011000 vs. ExPASy TrEMBL
Match: A0A5A7V8Y5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005210 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 9.1e-22
Identity = 57/82 (69.51%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 2   AVSDEHVTEGSGPTWLDRTRSTSTTKRPWRYRDDGATTKAKMETYRCLTDARTTRDLTRK 61
           AVSD HVTEGSGPT LD T    T KRPWRYRDDG+TTKAK ET+R L DART +DLTRK
Sbjct: 276 AVSDRHVTEGSGPTRLDGTHLALTVKRPWRYRDDGSTTKAKAETHRRLMDARTVKDLTRK 335

Query: 62  GRNADKVERGWLPGLSGSTEAG 84
           GR+ D+VE  WLPGL    E G
Sbjct: 336 GRDTDEVEHDWLPGLRIDGEEG 357

[Close]

BLAST of IVF0011000 vs. NCBI nr
Match: KAA0062151.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 2.20e-27
Identity = 57/82 (69.51%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 2   AVSDEHVTEGSGPTWLDRTRSTSTTKRPWRYRDDGATTKAKMETYRCLTDARTTRDLTRK 61
           AVSD HVTEGSGPT LD T    T KRPWRYRDDG+TTKAK ET+R L DART +DLTRK
Sbjct: 276 AVSDRHVTEGSGPTRLDGTHLALTVKRPWRYRDDGSTTKAKAETHRRLMDARTVKDLTRK 335

Query: 62  GRNADKVERGWLPGLSGSTEAG 83
           GR+ D+VE  WLPGL    E G
Sbjct: 336 GRDTDEVEHDWLPGLRIDGEEG 357

The following BLAST results are available for this feature:

BLAST of IVF0011000 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0011000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8Y5	9.1e-22	69.51	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0011000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062151.1	2.20e-27	69.51	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0011000 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0011000.1	IVF0011000.1	mRNA