IVF0010972 (gene) Melon (IVF77) v1

Overview


Name	IVF0010972
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr03: 23575581 .. 23575826 (+)
RNA-Seq Expression	IVF0010972
Synteny	IVF0010972

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAAAATTCAGAGAAAAAGGGGAAGCAAAACCCTAGATCTGGATCGAAATCGCCATTCACCTCAATCGACCAGAAACGCGTTGAATATCCCGCCGACGCAGTTAATCGAACGTGGAAGAAACAAATTGGAGATCAAATAGAGCGAGAAATCGATTGAGTTTGATCACAGATTGAAATTGAGGGCAAAAGGGAATGAAATTGGGGGAAAGAAGAACAAATATGGCGGTAACGGACGGAGTTAA

mRNA sequence

ATGCACAAAATTCAGAGAAAAAGGGGAAGCAAAACCCTAGATCTGGATCGAAATCGCCATTCACCTCAATCGACCAGAAACGCGTTGAATATCCCGCCGACGCACGAGAAATCGATTGAGTTTGATCACAGATTGAAATTGAGGGCAAAAGGGAATGAAATTGGGGGAAAGAAGAACAAATATGGCGGTAACGGACGGAGTTAA

Coding sequence (CDS)

ATGCACAAAATTCAGAGAAAAAGGGGAAGCAAAACCCTAGATCTGGATCGAAATCGCCATTCACCTCAATCGACCAGAAACGCGTTGAATATCCCGCCGACGCACGAGAAATCGATTGAGTTTGATCACAGATTGAAATTGAGGGCAAAAGGGAATGAAATTGGGGGAAAGAAGAACAAATATGGCGGTAACGGACGGAGTTAA

Protein sequence

MHKIQRKRGSKTLDLDRNRHSPQSTRNALNIPPTHEKSIEFDHRLKLRAKGNEIGGKKNKYGGNGRS

Homology

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BLAST of IVF0010972 vs. ExPASy TrEMBL
Match: A0A0A0LSB3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379230 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.2e-22
Identity = 61/81 (75.31%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 1  MHKIQRKRGSKTLDLDRNRHSPQSTRNALNIPPTH--------------EKSIEFDHRLK 60
          MHKIQRKRGS+TLDLDRNRHSPQSTRNALNIP                 +KSIEFDHRLK
Sbjct: 1  MHKIQRKRGSRTLDLDRNRHSPQSTRNALNIPSVQLIERRRNKLEMKESKKSIEFDHRLK 60

Query: 61 LRAKGNEIGGKKNKYGGNGRS 68
          L+AKGNEIGGKKNKYGGNGRS
Sbjct: 61 LKAKGNEIGGKKNKYGGNGRS 81

The following BLAST results are available for this feature:

BLAST of IVF0010972 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010972 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSB3	3.2e-22	75.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G379230 PE=4 SV=1	[more]

BLAST of IVF0010972 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of IVF0010972 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010972.1	IVF0010972.1	mRNA