IVF0010898 (gene) Melon (IVF77) v1

Overview


Name	IVF0010898
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	aluminum-activated malate transporter 8-like
Location	chr04: 29401360 .. 29401663 (+)
RNA-Seq Expression	IVF0010898
Synteny	IVF0010898

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGTTTAAACATGGTAGAAAATTCAGGCAAGACATTTAGTTCGGAATTAGGAAAGGCCTTGAAAGCCTTAGCCGTAGCAGTGAAGACGATGACTGGTCCATCATACTCATCCCAACTCCATCAAAACCCCGCTAAATCTGCCATTAACAATCTAAATAGATTTGAGATCATTGAATCGACTGTAAAGCCATTGATAGAAGTTGAAGATGAACAAGAACAAAAACCCCCATATTATTATTACAGATAGTGCAACAGAGAATGAGGATCATTCCATATATGAACATGGATATGTAAATTAA

mRNA sequence

ATGGAAAGTTTAAACATGGTAGAAAATTCAGGCAAGACATTTAGTTCGGAATTAGGAAAGGCCTTGAAAGCCTTAGCCGTAGCAGTGAAGACGATGACTGGTCCATCATACTCATCCCAACTCCATCAAAACCCCGCTAAATCTGCCATTAACAATCTAAATAGATTTGAGATCATTGAATCGACTAACAAAAACCCCCATATTATTATTACAGATAGTGCAACAGAGAATGAGGATCATTCCATATATGAACATGGATATGTAAATTAA

Coding sequence (CDS)

ATGGAAAGTTTAAACATGGTAGAAAATTCAGGCAAGACATTTAGTTCGGAATTAGGAAAGGCCTTGAAAGCCTTAGCCGTAGCAGTGAAGACGATGACTGGTCCATCATACTCATCCCAACTCCATCAAAACCCCGCTAAATCTGCCATTAACAATCTAAATAGATTTGAGATCATTGAATCGACTAACAAAAACCCCCATATTATTATTACAGATAGTGCAACAGAGAATGAGGATCATTCCATATATGAACATGGATATGTAAATTAA

Protein sequence

MESLNMVENSGKTFSSELGKALKALAVAVKTMTGPSYSSQLHQNPAKSAINNLNRFEIIESTNKNPHIIITDSATENEDHSIYEHGYVN

Homology

[Close]

BLAST of IVF0010898 vs. ExPASy TrEMBL
Match: A0A0A0LB29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781600 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 72/92 (78.26%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 9  NSGKTFSSELGKALKALAVAVKTMTGPSYSSQLHQNPAKSAINNLNRFEIIESTNK---- 68
          NSGKT SSELGKALKALAVA+KTMT PS SSQL+QNPAKSAINNLNRFEIIEST K    
Sbjct: 5  NSGKTLSSELGKALKALAVAMKTMTDPSNSSQLYQNPAKSAINNLNRFEIIESTVKPLIE 64

Query: 69 -------NPHIIITDSATENEDHSIYEHGYVN 90
                  PHIIITD ATENEDHSIYE GYVN
Sbjct: 65 VEDEKEQKPHIIITDRATENEDHSIYERGYVN 96

[Close]

BLAST of IVF0010898 vs. ExPASy TrEMBL
Match: A0A5D3DNX6 (Aluminum-activated malate transporter 8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004590 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 6   MVENSGKTFSSELGKALKALAVAVKTMTGPSYSSQLHQNPAKSAINNL 54
           M+E   KT SSE GKALKALA A+KTMT PS SSQLH N AKSA+N+L
Sbjct: 307 MMEVPCKTISSESGKALKALATAMKTMTDPSPSSQLHLNAAKSAVNDL 354

[Close]

BLAST of IVF0010898 vs. ExPASy TrEMBL
Match: A0A1S3B7M1 (aluminum-activated malate transporter 8-like OS=Cucumis melo OX=3656 GN=LOC103486680 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 6   MVENSGKTFSSELGKALKALAVAVKTMTGPSYSSQLHQNPAKSAINNL 54
           M+E   KT SSE GKALKALA A+KTMT PS SSQLH N AKSA+N+L
Sbjct: 307 MMEVPCKTISSESGKALKALATAMKTMTDPSPSSQLHLNAAKSAVNDL 354

[Close]

BLAST of IVF0010898 vs. ExPASy TrEMBL
Match: A0A0A0LES6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781620 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 6  MVENSGKTFSSELGKALKALAVAVKTMTGPSYSSQLHQNPAKSAINNL 54
          M+E   KT SSE GKALKALA A+K MT PS SSQLH N AKSA+N+L
Sbjct: 1  MLEVPCKTISSESGKALKALATAMKKMTDPSPSSQLHLNAAKSAVNDL 48

[Close]

BLAST of IVF0010898 vs. ExPASy TrEMBL
Match: A0A6J1FAA4 (aluminum-activated malate transporter 8-like OS=Cucurbita moschata OX=3662 GN=LOC111442257 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.6e-05
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 6   MVENSGKTFSSELGKALKALAVAVKTMTGPSYSSQLHQNPAKSAINNL 54
           M+E   KT SSE GKALKALA  +K MT PS SSQ+H N AKSA+N+L
Sbjct: 311 MIEVPCKTLSSESGKALKALATGMKAMTNPSSSSQVHLNAAKSAMNDL 358

[Close]

BLAST of IVF0010898 vs. NCBI nr
Match: KGN59351.2 (hypothetical protein Csa_001509 [Cucumis sativus])

HSP 1 Score: 129 bits (323), Expect = 3.91e-36
Identity = 72/92 (78.26%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 9   NSGKTFSSELGKALKALAVAVKTMTGPSYSSQLHQNPAKSAINNLNRFEIIESTNK---- 68
           NSGKT SSELGKALKALAVA+KTMT PS SSQL+QNPAKSAINNLNRFEIIEST K    
Sbjct: 41  NSGKTLSSELGKALKALAVAMKTMTDPSNSSQLYQNPAKSAINNLNRFEIIESTVKPLIE 100

Query: 69  -------NPHIIITDSATENEDHSIYEHGYVN 89
                   PHIIITD ATENEDHSIYE GYVN
Sbjct: 101 VEDEKEQKPHIIITDRATENEDHSIYERGYVN 132

[Close]

BLAST of IVF0010898 vs. NCBI nr
Match: XP_008442919.1 (PREDICTED: aluminum-activated malate transporter 8-like [Cucumis melo] >KAA0043811.1 aluminum-activated malate transporter 8-like [Cucumis melo var. makuwa] >TYK25321.1 aluminum-activated malate transporter 8-like [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 6.67e-09
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 6   MVENSGKTFSSELGKALKALAVAVKTMTGPSYSSQLHQNPAKSAINNL 53
           M+E   KT SSE GKALKALA A+KTMT PS SSQLH N AKSA+N+L
Sbjct: 307 MMEVPCKTISSESGKALKALATAMKTMTDPSPSSQLHLNAAKSAVNDL 354

[Close]

BLAST of IVF0010898 vs. NCBI nr
Match: XP_031737867.1 (aluminum-activated malate transporter 8 [Cucumis sativus] >KAE8651115.1 hypothetical protein Csa_001300 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 4.34e-08
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 6   MVENSGKTFSSELGKALKALAVAVKTMTGPSYSSQLHQNPAKSAINNL 53
           M+E   KT SSE GKALKALA A+K MT PS SSQLH N AKSA+N+L
Sbjct: 307 MLEVPCKTISSESGKALKALATAMKKMTDPSPSSQLHLNAAKSAVNDL 354

[Close]

BLAST of IVF0010898 vs. NCBI nr
Match: XP_022935343.1 (aluminum-activated malate transporter 8-like [Cucurbita moschata])

HSP 1 Score: 58.5 bits (140), Expect = 1.51e-07
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 6   MVENSGKTFSSELGKALKALAVAVKTMTGPSYSSQLHQNPAKSAINNL 53
           M+E   KT SSE GKALKALA  +K MT PS SSQ+H N AKSA+N+L
Sbjct: 311 MIEVPCKTLSSESGKALKALATGMKAMTNPSSSSQVHLNAAKSAMNDL 358

[Close]

BLAST of IVF0010898 vs. NCBI nr
Match: KAG6580748.1 (Aluminum-activated malate transporter 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 1.51e-07
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 6   MVENSGKTFSSELGKALKALAVAVKTMTGPSYSSQLHQNPAKSAINNL 53
           M+E   KT SSE GKALKALA  +K MT PS SSQ+H N AKSA+N+L
Sbjct: 311 MIEVPCKTLSSESGKALKALATGMKAMTNPSSSSQVHLNAAKSAMNDL 358

The following BLAST results are available for this feature:

BLAST of IVF0010898 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0010898 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB29	1.6e-26	78.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781600 PE=4 SV=1	[more]
A0A5D3DNX6	2.5e-06	70.83	Aluminum-activated malate transporter 8-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3B7M1	2.5e-06	70.83	aluminum-activated malate transporter 8-like OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A0A0LES6	1.2e-05	68.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781620 PE=3 SV=1	[more]
A0A6J1FAA4	3.6e-05	64.58	aluminum-activated malate transporter 8-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of IVF0010898 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59351.2	3.91e-36	78.26	hypothetical protein Csa_001509 [Cucumis sativus]	[more]
XP_008442919.1	6.67e-09	70.83	PREDICTED: aluminum-activated malate transporter 8-like [Cucumis melo] >KAA00438...	[more]
XP_031737867.1	4.34e-08	68.75	aluminum-activated malate transporter 8 [Cucumis sativus] >KAE8651115.1 hypothet...	[more]
XP_022935343.1	1.51e-07	64.58	aluminum-activated malate transporter 8-like [Cucurbita moschata]	[more]
KAG6580748.1	1.51e-07	64.58	Aluminum-activated malate transporter 8, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of IVF0010898 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010898.2	IVF0010898.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0034220	ion transmembrane transport
biological_process	GO:0015743	malate transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008422	beta-glucosidase activity