IVF0010774 (gene) Melon (IVF77) v1

Overview


Name	IVF0010774
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	40S ribosomal protein S14
Location	chr04: 29705364 .. 29706788 (-)
RNA-Seq Expression	IVF0010774
Synteny	IVF0010774

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTTCATCGCTCTTTTCCATTTTATTTCTGTATTAAGTTCATGGATATCATAGTTTCAATCCGATTATAATTGTTAAATTGAAAGAAAAATGTCGGAAACCTTATGGAAAATTTTGTCATTAGCAATCGATTCAAGATTGGAAAGGAGAATGGAAATTTGTATACCTCTGTTTATTTTTTTCTCGTAACAAAGTCGATGCGTTGATTCTGCCTGCATTTCAACTGTCGTTCCCTCATGTTTGCCTTCTAAACGCAAAATTGGAAGTTTACGACATTTGTGATGTGTACTCTGTAGTCTATAGGATTGGAAGTTTACGACATTTGTGATGTGTATTCTGTAGTCGAGAAGGAAGACTAGAGAGCCTAAGGAGGAAACTGTCACTCTTGGCCCTGCTGTTCGTGAAGGAGAGCATGTCTTTGGTGTTGCTCACATTTTTGCTTCGTTTAATGACACTTTCATGTGAGTGATCTTCGTTAGATTCTTCATTTAAGAACTTATATGGTTTTTTTGTGTAATCGACTCATTGTTCTATGGTTGAATTGCAGCATGTGACCGATCTGTCTGGTCGGGAAACACTTGTTCGCATCACTGGTATATAATCTCTTCCGCTAACTGTTGAAATTGATTCTGGCATAGCTAATGGTCTGCTTTTTGAGTGATTTGATTACACTAGTTGATAATTTCCCTGTATTTTGTAGTTCATTCTCATTGTGATTTAGTATTCTGTCTTTTGAATGTTGGACTGATGATTTATCTGTCTTTGTTCAGGTGGTATGAAGGTGAAAGCTGATAGAGATGAATCGTCGCCTTATGCTGCCATGCTTGCTGCCCAAGACGTTTCTCAAAGATGCAAGGTTTGATCCATTATCAGCTTTATGTGTTTCTCTTCGTTATAGTGTACTTAATCTAAATGTGAGAATCGCCATGTTGCCAAGAGATGTGCATTTGTATTGAATCACTTGGTAATGTCTGACAGGAACTTGGCATCACTGCTTTACACATAAAGCTTCGGGCTACTGGTGGAAATAAAACCAAAACTCCTGGACCTGGTGCTCAATCAGCTCTTAGAGCCCTTGCACGTTCAGGCATGAGGATCGGTCGTATAGGTGCATATTCTTGCTTTTCGGTTATGTTTGTGCATAGAGTTGTGTAATTGACTTAGGCATTCTTAATGCATGTTAGGAAGCAAATTTCATACTACTAAAATTGATTATAAATGATTAAAATCATTTTTGGAACGATTTAGAAAATGACAAGTGATCAAACCATTTTGGTGGGATTTTCACAAGGTATTATACTTCAACTTTCAAGGTCTAATTATTTCATTAACCTAATTTGTTGGTCTTCGCAGAGGATGTAACTCCAATACCTACCGACAGCACTCGAAGAAAGGGTGGAAGGAGAGGAAGAAGACTGTGA

mRNA sequence

ATGTCGAGAAGGAAGACTAGAGAGCCTAAGGAGGAAACTGTCACTCTTGGCCCTGCTGTTCGTGAAGGAGAGCATGTCTTTGGTCATGTGACCGATCTGTCTGGTCGGGAAACACTTGTTCGCATCACTGGTGGTATGAAGGTGAAAGCTGATAGAGATGAATCGTCGCCTTATGCTGCCATGCTTGCTGCCCAAGACGTTTCTCAAAGATGCAAGGAACTTGGCATCACTGCTTTACACATAAAGCTTCGGGCTACTGGTGGAAATAAAACCAAAACTCCTGGACCTGGTGCTCAATCAGCTCTTAGAGCCCTTGCACGTTCAGGCATGAGGATCGGTCGTATAGAGGATGTAACTCCAATACCTACCGACAGCACTCGAAGAAAGGGTGGAAGGAGAGGAAGAAGACTGTGA

Coding sequence (CDS)

ATGTCGAGAAGGAAGACTAGAGAGCCTAAGGAGGAAACTGTCACTCTTGGCCCTGCTGTTCGTGAAGGAGAGCATGTCTTTGGTCATGTGACCGATCTGTCTGGTCGGGAAACACTTGTTCGCATCACTGGTGGTATGAAGGTGAAAGCTGATAGAGATGAATCGTCGCCTTATGCTGCCATGCTTGCTGCCCAAGACGTTTCTCAAAGATGCAAGGAACTTGGCATCACTGCTTTACACATAAAGCTTCGGGCTACTGGTGGAAATAAAACCAAAACTCCTGGACCTGGTGCTCAATCAGCTCTTAGAGCCCTTGCACGTTCAGGCATGAGGATCGGTCGTATAGAGGATGTAACTCCAATACCTACCGACAGCACTCGAAGAAAGGGTGGAAGGAGAGGAAGAAGACTGTGA

Protein sequence

MSRRKTREPKEETVTLGPAVREGEHVFGHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL

Homology

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BLAST of IVF0010774 vs. ExPASy Swiss-Prot
Match: Q9CAX6 (40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-64
Identity = 128/150 (85.33%), Postives = 135/150 (90.00%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MS+RKT+EPK ETVTLGP+VREGE VFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 138
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. ExPASy Swiss-Prot
Match: P42036 (40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2)

HSP 1 Score: 246.1 bits (627), Expect = 2.3e-64
Identity = 128/150 (85.33%), Postives = 134/150 (89.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MS+RKT+EPK E VTLGPAVREGE VFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 138
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. ExPASy Swiss-Prot
Match: Q9SIH0 (40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.1e-63
Identity = 126/150 (84.00%), Postives = 134/150 (89.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MS+RKT+EPK + VTLGP+VREGE VFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 138
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. ExPASy Swiss-Prot
Match: P19950 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.5e-63
Identity = 130/150 (86.67%), Postives = 133/150 (88.67%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEE V LGP VREGE VFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 138
           SGM+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 149

[Close]

BLAST of IVF0010774 vs. ExPASy Swiss-Prot
Match: P19951 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 2.5e-63
Identity = 128/148 (86.49%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 3   RRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMKVK 62
           R+KTREPKEE V LGPAVREGEHVFG             HVTDLSGRETLVRITGGMKVK
Sbjct: 4   RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVK 63

Query: 63  ADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 122
           ADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG
Sbjct: 64  ADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSG 123

Query: 123 MRIGRIEDVTPIPTDSTRRKGGRRGRRL 138
           M+IGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 124 MKIGRIEDVTPVPTDSTRRKGGRRGRRL 150

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BLAST of IVF0010774 vs. ExPASy TrEMBL
Match: A0A6J1J4Y9 (40S ribosomal protein S14-2 OS=Cucurbita maxima OX=3661 GN=LOC111481789 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.3e-66
Identity = 137/150 (91.33%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 138
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. ExPASy TrEMBL
Match: A0A0A0LGP6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777590 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.3e-66
Identity = 137/150 (91.33%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 138
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. ExPASy TrEMBL
Match: A0A1S3B682 (40S ribosomal protein S14-2 OS=Cucumis melo OX=3656 GN=LOC103486630 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.3e-66
Identity = 137/150 (91.33%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 138
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. ExPASy TrEMBL
Match: A0A6J1F6L2 (40S ribosomal protein S14-2 OS=Cucurbita moschata OX=3662 GN=LOC111441344 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.3e-66
Identity = 137/150 (91.33%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 138
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. ExPASy TrEMBL
Match: A0A5D3DNR5 (40S ribosomal protein S14-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004100 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.3e-66
Identity = 137/150 (91.33%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 138
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. NCBI nr
Match: XP_004149195.1 (40S ribosomal protein S14-2 [Cucumis sativus] >XP_004149197.1 40S ribosomal protein S14-2 [Cucumis sativus] >XP_008442863.1 PREDICTED: 40S ribosomal protein S14-2 [Cucumis melo] >XP_008442864.1 PREDICTED: 40S ribosomal protein S14-2 [Cucumis melo] >XP_022144796.1 40S ribosomal protein S14-2 [Momordica charantia] >XP_022934060.1 40S ribosomal protein S14-2 [Cucurbita moschata] >XP_022934073.1 40S ribosomal protein S14-2 [Cucurbita moschata] >XP_022983150.1 40S ribosomal protein S14-2 [Cucurbita maxima] >XP_022983152.1 40S ribosomal protein S14-2 [Cucurbita maxima] >XP_023526342.1 40S ribosomal protein S14-2 [Cucurbita pepo subsp. pepo] >XP_023526400.1 40S ribosomal protein S14-2 [Cucurbita pepo subsp. pepo] >XP_038903581.1 40S ribosomal protein S14-2 [Benincasa hispida] >KAA0043860.1 40S ribosomal protein S14-2-like [Cucumis melo var. makuwa] >KAG6580714.1 40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. sororia] >KGN59151.1 hypothetical protein Csa_001943 [Cucumis sativus] >KGN59153.1 hypothetical protein Csa_001079 [Cucumis sativus] >TYK25276.1 40S ribosomal protein S14-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (663), Expect = 7.80e-87
Identity = 137/150 (91.33%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 137
           SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. NCBI nr
Match: KAF5181185.1 (30S ribosomal protein S11 [Thalictrum thalictroides])

HSP 1 Score: 259 bits (661), Expect = 1.02e-86
Identity = 130/137 (94.89%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGHVTDLSGRETLVRITGGMKVKADRDESSPYAA 60
           MSR+K REPK ETVTLGP+VREGEHVFGHVTDLSGRET+VRITGGMKVKADRDESSPYAA
Sbjct: 1   MSRKKVREPKVETVTLGPSVREGEHVFGHVTDLSGRETMVRITGGMKVKADRDESSPYAA 60

Query: 61  MLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTP 120
           MLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGM+IGRIEDVTP
Sbjct: 61  MLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 120

Query: 121 IPTDSTRRKGGRRGRRL 137
           IPTDSTRRKGGRRGRRL
Sbjct: 121 IPTDSTRRKGGRRGRRL 137

[Close]

BLAST of IVF0010774 vs. NCBI nr
Match: XP_022946789.1 (40S ribosomal protein S14-2-like [Cucurbita moschata] >XP_023005923.1 40S ribosomal protein S14-2-like [Cucurbita maxima] >XP_023538913.1 40S ribosomal protein S14-2-like [Cucurbita pepo subsp. pepo] >KAG6596583.1 40S ribosomal protein S14-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 259 bits (662), Expect = 1.11e-86
Identity = 136/150 (90.67%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 137
           SGMR+GRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRVGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. NCBI nr
Match: XP_038903512.1 (40S ribosomal protein S14-2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 258 bits (660), Expect = 2.24e-86
Identity = 136/150 (90.67%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MSRRKTREPKEETVTLGPAVREGEHVFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 137
           SGMRIGR+EDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMRIGRMEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. NCBI nr
Match: PIA28209.1 (hypothetical protein AQUCO_07200094v1 [Aquilegia coerulea])

HSP 1 Score: 258 bits (658), Expect = 2.91e-86
Identity = 129/137 (94.16%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFGHVTDLSGRETLVRITGGMKVKADRDESSPYAA 60
           MS++K REPK ETVTLGP+VREGEHVFGHVTDLSGRET+VRITGGMKVKADRDESSPYAA
Sbjct: 1   MSKKKVREPKVETVTLGPSVREGEHVFGHVTDLSGRETMVRITGGMKVKADRDESSPYAA 60

Query: 61  MLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIEDVTP 120
           MLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGM+IGRIEDVTP
Sbjct: 61  MLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTP 120

Query: 121 IPTDSTRRKGGRRGRRL 137
           IPTDSTRRKGGRRGRRL
Sbjct: 121 IPTDSTRRKGGRRGRRL 137

[Close]

BLAST of IVF0010774 vs. TAIR 10
Match: AT3G11510.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 246.9 bits (629), Expect = 9.4e-66
Identity = 128/150 (85.33%), Postives = 135/150 (90.00%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MS+RKT+EPK ETVTLGP+VREGE VFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 138
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. TAIR 10
Match: AT3G52580.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-65
Identity = 128/150 (85.33%), Postives = 134/150 (89.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MS+RKT+EPK E VTLGPAVREGE VFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 138
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. TAIR 10
Match: AT2G36160.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 243.8 bits (621), Expect = 8.0e-65
Identity = 126/150 (84.00%), Postives = 134/150 (89.33%), Query Frame = 0


Query: 1   MSRRKTREPKEETVTLGPAVREGEHVFG-------------HVTDLSGRETLVRITGGMK 60
           MS+RKT+EPK + VTLGP+VREGE VFG             HVTDLSGRETLVRITGGMK
Sbjct: 1   MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMK 60

Query: 61  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 120
           VKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALAR
Sbjct: 61  VKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALAR 120

Query: 121 SGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 138
           SGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 SGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of IVF0010774 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 46.2 bits (108), Expect = 2.4e-05
Identity = 32/104 (30.77%), Postives = 50/104 (48.08%), Query Frame = 0


Query: 30  VTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGN 89
           VTD+ GR       G    +  R   +P+AA  AA +  +   + G+    +++      
Sbjct: 43  VTDVRGRVISWSSAGTCGFRGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVRI------ 102

Query: 90  KTKTPGPGAQSALRALARSGMRIGRIEDVTPIPTDSTRRKGGRR 134
             K PG G  +ALRA+ RSG+ +  + DVTP+P +  R    RR
Sbjct: 103 --KGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRR 137

The following BLAST results are available for this feature:

BLAST of IVF0010774 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAX6	1.3e-64	85.33	40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1	[more]
P42036	2.3e-64	85.33	40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2	[more]
Q9SIH0	1.1e-63	84.00	40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1	[more]
P19950	1.5e-63	86.67	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]
P19951	2.5e-63	86.49	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]

BLAST of IVF0010774 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J4Y9	7.3e-66	91.33	40S ribosomal protein S14-2 OS=Cucurbita maxima OX=3661 GN=LOC111481789 PE=3 SV=...	[more]
A0A0A0LGP6	7.3e-66	91.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777590 PE=3 SV=1	[more]
A0A1S3B682	7.3e-66	91.33	40S ribosomal protein S14-2 OS=Cucumis melo OX=3656 GN=LOC103486630 PE=3 SV=1	[more]
A0A6J1F6L2	7.3e-66	91.33	40S ribosomal protein S14-2 OS=Cucurbita moschata OX=3662 GN=LOC111441344 PE=3 S...	[more]
A0A5D3DNR5	7.3e-66	91.33	40S ribosomal protein S14-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of IVF0010774 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149195.1	7.80e-87	91.33	40S ribosomal protein S14-2 [Cucumis sativus] >XP_004149197.1 40S ribosomal prot...	[more]
KAF5181185.1	1.02e-86	94.89	30S ribosomal protein S11 [Thalictrum thalictroides]	[more]
XP_022946789.1	1.11e-86	90.67	40S ribosomal protein S14-2-like [Cucurbita moschata] >XP_023005923.1 40S riboso...	[more]
XP_038903512.1	2.24e-86	90.67	40S ribosomal protein S14-2-like isoform X2 [Benincasa hispida]	[more]
PIA28209.1	2.91e-86	94.16	hypothetical protein AQUCO_07200094v1 [Aquilegia coerulea]	[more]

BLAST of IVF0010774 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11510.1	9.4e-66	85.33	Ribosomal protein S11 family protein	[more]
AT3G52580.1	1.6e-65	85.33	Ribosomal protein S11 family protein	[more]
AT2G36160.1	8.0e-65	84.00	Ribosomal protein S11 family protein	[more]
ATCG00750.1	2.4e-05	30.77	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 29..133 e-value: 8.1E-39 score: 132.4
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 2..137
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 3..134 score: 16.164324
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 1..137 e-value: 4.8E-55 score: 187.6
None	No IPR available	PANTHER	PTHR11759:SF37	BNAA05G27530D PROTEIN	coord: 2..137
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 25..135
IPR018102	Ribosomal S11, conserved site	PROSITE	PS00054	RIBOSOMAL_S11	coord: 102..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0010774.1	IVF0010774.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0048027	mRNA 5'-UTR binding
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome