IVF0010487 (gene) Melon (IVF77) v1

Overview
NameIVF0010487
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionNBS-LRR type resistance protein
Locationchr11: 18112960 .. 18113420 (-)
RNA-Seq ExpressionIVF0010487
SyntenyIVF0010487
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTACGGCTCGACTCGGCTCGGCTCAGTTCTCGACTTGGTTCGCGGCTCGGTTTGGTTCAGCTCGTGGCTCGCGGTTTGGTCTGGCTCGAGTCGGCTTGGTCGACTCGGGTCAACTTGGTCGACTCGGTTCGAACAGCTTAAAGCCAAGGTAACCACGAACGGCTGGTTTTCGAGCGTACAACGACGGTGAGCATTTTATGGATGACAGGCGAAGCGACAGCGAATCAGAAATGGAGGGATGACCCGCTCGACTAAGGCAGAAGCGACCGACGGCCATCTGGGTACACGAGGCAGAGAGAGAGAATGTCGGAGATGGAGGAGCTTACGAATAGTCGGATGGTCGATCTTGAGGATTCATCAGTGGTTGACTGTTCTCAGGCGAAAGACGGAAACGTCAGATTTAGCCGGTTGGATGAAGGAGAAGTCGTGCGGATGGCAACTATGTTCATCAAGTGA

mRNA sequence

ATGGCTTACGGCTCGACTCGGCTCGGCTCAGTTCTCGACTTGGTTCGCGGCTCGGTTTGGTTCAGCTCGTGGCTCGCGGTTTGGTCTGGCTCGAGTCGGCTTGGTCGACTCGGGTCAACTTGGTCGACTCGGTTCGAACAGCTTAAAGCCAAGGTAACCACGAACGGCTGGTTTTCGAGCGTACAACGACGAAGCGACCGACGGCCATCTGGGTACACGAGGCAGAGAGAGAGAATGTCGGAGATGGAGGAGCTTACGAATAGTCGGATGGTCGATCTTGAGGATTCATCAGTGGTTGACTGTTCTCAGGCGAAAGACGGAAACGTCAGATTTAGCCGGTTGGATGAAGGAGAAGTCGTGCGGATGGCAACTATGTTCATCAAGTGA

Coding sequence (CDS)

ATGGCTTACGGCTCGACTCGGCTCGGCTCAGTTCTCGACTTGGTTCGCGGCTCGGTTTGGTTCAGCTCGTGGCTCGCGGTTTGGTCTGGCTCGAGTCGGCTTGGTCGACTCGGGTCAACTTGGTCGACTCGGTTCGAACAGCTTAAAGCCAAGGTAACCACGAACGGCTGGTTTTCGAGCGTACAACGACGAAGCGACCGACGGCCATCTGGGTACACGAGGCAGAGAGAGAGAATGTCGGAGATGGAGGAGCTTACGAATAGTCGGATGGTCGATCTTGAGGATTCATCAGTGGTTGACTGTTCTCAGGCGAAAGACGGAAACGTCAGATTTAGCCGGTTGGATGAAGGAGAAGTCGTGCGGATGGCAACTATGTTCATCAAGTGA

Protein sequence

MAYGSTRLGSVLDLVRGSVWFSSWLAVWSGSSRLGRLGSTWSTRFEQLKAKVTTNGWFSSVQRRSDRRPSGYTRQRERMSEMEELTNSRMVDLEDSSVVDCSQAKDGNVRFSRLDEGEVVRMATMFIK
Homology
[Close]
BLAST of IVF0010487 vs. ExPASy TrEMBL
Match: A0A5D3BZ53 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002890 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.8e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 79  MSEMEELTNSRMVDLEDSSVVDCSQAKDGNVRFSRLDEGEVVRMATMFI 128
           MSEMEELTNSRMVDLEDSSVVDCSQAKDGNVRFSRLDEGEVVRMATMFI
Sbjct: 1   MSEMEELTNSRMVDLEDSSVVDCSQAKDGNVRFSRLDEGEVVRMATMFI 49

[Close]
BLAST of IVF0010487 vs. ExPASy TrEMBL
Match: A0A5A7V1G1 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002980 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 45/62 (72.58%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 49  KAKVTTNGWFSSVQRRSDRRPSGYTRQRERMSEMEELTNSRMVDLEDSSVVDCSQAKDGN 108
           + ++   G   S + RSDRRPSGYTR RER SEMEELTNSRM  LEDSSVVDCSQAKDGN
Sbjct: 105 RQQIGNGGMTRSTKGRSDRRPSGYTRWRERTSEMEELTNSRMAGLEDSSVVDCSQAKDGN 164

Query: 109 VR 111
           VR
Sbjct: 165 VR 166

[Close]
BLAST of IVF0010487 vs. NCBI nr
Match: TYK05033.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 3.55e-21
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0 

Query: 79  MSEMEELTNSRMVDLEDSSVVDCSQAKDGNVRFSRLDEGEVVRMATMFI 127
           MSEMEELTNSRMVDLEDSSVVDCSQAKDGNVRFSRLDEGEVVRMATMFI
Sbjct: 1   MSEMEELTNSRMVDLEDSSVVDCSQAKDGNVRFSRLDEGEVVRMATMFI 49

[Close]
BLAST of IVF0010487 vs. NCBI nr
Match: KAA0061993.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 1.09e-17
Identity = 45/62 (72.58%), Postives = 49/62 (79.03%), Query Frame = 0 

Query: 49  KAKVTTNGWFSSVQRRSDRRPSGYTRQRERMSEMEELTNSRMVDLEDSSVVDCSQAKDGN 108
           + ++   G   S + RSDRRPSGYTR RER SEMEELTNSRM  LEDSSVVDCSQAKDGN
Sbjct: 105 RQQIGNGGMTRSTKGRSDRRPSGYTRWRERTSEMEELTNSRMAGLEDSSVVDCSQAKDGN 164

Query: 109 VR 110
           VR
Sbjct: 165 VR 166

The following BLAST results are available for this feature:
BLAST of IVF0010487 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0010487 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BZ535.8e-17100.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G0028... [more]
A0A5A7V1G11.8e-1372.58NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
BLAST of IVF0010487 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK05033.13.55e-21100.00gag/pol protein [Cucumis melo var. makuwa][more]
KAA0061993.11.09e-1772.58NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
BLAST of IVF0010487 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010487.1IVF0010487.1mRNA