IVF0010332 (gene) Melon (IVF77) v1

Overview
NameIVF0010332
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Locationchr11: 17178659 .. 17178913 (+)
RNA-Seq ExpressionIVF0010332
SyntenyIVF0010332
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGACAACGATGGAAGAGATAGAGATGTGGTTTATGCATCGTCTTTCATGCCATCGCAACCAAAAAAATGCTCTCATTCCGACAAGATGTAGATTTGCACCAAATCGTTCATCGTTTAACGATAACCGGTACCAAAGTTCATTGATTACAAGTGACAGAACTATCGAAGAAGAAAAGAAAATAGAGAGCGGTGGTGATTTGACCCAAAACCCTAAAGTGAGATTGAGAAGAGAGGAAAGAAAGGCGTGA

mRNA sequence

ATGAAAAGGACAACGATGGAAGAGATAGAGATGTGGTTTATGCATCGTCTTTCATGCCATCGCAACCAAAAAAATGCTCTCATTCCGACAAGATGTAGATTTGCACCAAATCGTTCATCGTTTAACGATAACCGGTACCAAAGTTCATTGATTACAAGTGACAGAACTATCGAAGAAGAAAAGAAAATAGAGAGCGGTGGTGATTTGACCCAAAACCCTAAAGTGAGATTGAGAAGAGAGGAAAGAAAGGCGTGA

Coding sequence (CDS)

ATGAAAAGGACAACGATGGAAGAGATAGAGATGTGGTTTATGCATCGTCTTTCATGCCATCGCAACCAAAAAAATGCTCTCATTCCGACAAGATGTAGATTTGCACCAAATCGTTCATCGTTTAACGATAACCGGTACCAAAGTTCATTGATTACAAGTGACAGAACTATCGAAGAAGAAAAGAAAATAGAGAGCGGTGGTGATTTGACCCAAAACCCTAAAGTGAGATTGAGAAGAGAGGAAAGAAAGGCGTGA

Protein sequence

MKRTTMEEIEMWFMHRLSCHRNQKNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIESGGDLTQNPKVRLRREERKA
Homology
BLAST of IVF0010332 vs. ExPASy TrEMBL
Match: A0A5D3BSH6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00820 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 0

Query: 23  QKNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIESGGDLTQNPKVRLRREER 82
           QKN LIPT      +RSSFN+NRYQSS ITSD TIEEE+KIESGGD T NPKVRLRRE R
Sbjct: 49  QKNTLIPT------SRSSFNNNRYQSSSITSDITIEEEEKIESGGDSTLNPKVRLRREGR 104

Query: 83  KA 85
           KA
Sbjct: 109 KA 104

BLAST of IVF0010332 vs. ExPASy TrEMBL
Match: A0A5A7V7N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G001160 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.4e-11
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 24 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 65
          KNALIPTRCRF PN SSFNDNRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of IVF0010332 vs. ExPASy TrEMBL
Match: A0A5A7SWM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00630 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.4e-11
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 24 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 65
          KNALIPTRCRF PN SSFNDNRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of IVF0010332 vs. ExPASy TrEMBL
Match: A0A5D3DUF5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001500 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 24 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 65
          KNALIPTRCRF PN SSFN+NRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNENRYQSSSITSDRTIEEEEKIE 90

BLAST of IVF0010332 vs. ExPASy TrEMBL
Match: A0A5A7UKV8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001280 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.5e-10
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 24 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 65
          KNALI TRCRF PN SSFNDNRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALISTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of IVF0010332 vs. NCBI nr
Match: KAA0039548.1 (uncharacterized protein E6C27_scaffold744G00170 [Cucumis melo var. makuwa] >TYK01752.1 uncharacterized protein E5676_scaffold775G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 1.02e-17
Identity = 47/62 (75.81%), Postives = 50/62 (80.65%), Query Frame = 0

Query: 23  QKNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIESGGDLTQNPKVRLRREER 82
           QKN LIPT      +RSSFN+NRYQSS ITSD TIEEE+KIESGGD T NPKVRLRRE R
Sbjct: 49  QKNTLIPT------SRSSFNNNRYQSSSITSDITIEEEEKIESGGDSTLNPKVRLRREGR 104

Query: 83  KA 84
           KA
Sbjct: 109 KA 104

BLAST of IVF0010332 vs. NCBI nr
Match: KAA0061741.1 (uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 9.63e-16
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 24 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 64
          KNALIPTRCRF PN SSFNDNRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of IVF0010332 vs. NCBI nr
Match: KAA0035440.1 (uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.13e-15
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 24 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 64
          KNALIPTRCRF PN SSFNDNRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

BLAST of IVF0010332 vs. NCBI nr
Match: KAA0039167.1 (uncharacterized protein E6C27_scaffold121G00700 [Cucumis melo var. makuwa] >KAA0052049.1 uncharacterized protein E6C27_scaffold578G00120 [Cucumis melo var. makuwa] >KAA0061151.1 uncharacterized protein E6C27_scaffold753G00180 [Cucumis melo var. makuwa] >TYK05359.1 uncharacterized protein E5676_scaffold83G00280 [Cucumis melo var. makuwa] >TYK12370.1 uncharacterized protein E5676_scaffold302G001500 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 3.90e-15
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 24 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 64
          KNALIPTRCRF PN SSFN+NRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALIPTRCRFTPNHSSFNENRYQSSSITSDRTIEEEEKIE 90

BLAST of IVF0010332 vs. NCBI nr
Match: KAA0054315.1 (uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12351.1 uncharacterized protein E5676_scaffold302G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.58e-14
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 24 KNALIPTRCRFAPNRSSFNDNRYQSSLITSDRTIEEEKKIE 64
          KNALI TRCRF PN SSFNDNRYQSS ITSDRTIEEE+KIE
Sbjct: 50 KNALISTRCRFTPNHSSFNDNRYQSSSITSDRTIEEEEKIE 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BSH61.3e-1275.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V7N35.4e-1190.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SWM45.4e-1190.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DUF51.6e-1087.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UKV84.5e-1087.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0039548.11.02e-1775.81uncharacterized protein E6C27_scaffold744G00170 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0061741.19.63e-1690.24uncharacterized protein E6C27_scaffold212G001160 [Cucumis melo var. makuwa][more]
KAA0035440.11.13e-1590.24uncharacterized protein E6C27_scaffold285G00630 [Cucumis melo var. makuwa][more]
KAA0039167.13.90e-1587.80uncharacterized protein E6C27_scaffold121G00700 [Cucumis melo var. makuwa] >KAA0... [more]
KAA0054315.11.58e-1487.80uncharacterized protein E6C27_scaffold24G00360 [Cucumis melo var. makuwa] >TYK12... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0010332.1IVF0010332.1mRNA