IVF0009687 (gene) Melon (IVF77) v1

Overview
NameIVF0009687
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTranscription factor UPBEAT1-like
Locationchr09: 1754427 .. 1755158 (-)
RNA-Seq ExpressionIVF0009687
SyntenyIVF0009687
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTGGCTCTCACAATGAGCTCTAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCGAAGAAGAAGAACCAAACGATCTCTAACCCATTCCCGTCGTCGCTTCCACCGCCGTCACAATGCAGGCTGCCGGCCGGGGGATTCGACTCTCGGCTGCTCCGAAGTCTCCACCAAATTGGAAGCTCTGCAGAGCCTCATCCCGCCGCAATCCGCCGCTGGACACGGCCAACCACGGCAAGCGGATGAGTTGTTCAAGGACACCGCCGACTACATTGTTGTTTTGAAAACCCAAGTCGTTATCTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCAGTGACTCCCCAGACGCCGTCGTTTCATAGTTAAACGTCGCCGTTTCATAGTTCTCTCTCTCTCTCTCTCTCTTTTTTTCTTTTTTTCTTTTTTCTTTTTCTTTTTTTTTACTTTATGTAATTATGAGAGAAAAATAAAACTTGAAAAAAAAAATCAAAGAAAATAGATCATTTTGCGTTTGTTAATTTCTTCCCTCTTGGTCAAATGTTATATTGATCCAACTATTTTCATTTTGGCCAAGTTCCTTCCAATTAGTTCTTTTCCTTTAGATATAGAAAGTGAAGAATTCTTAGATGAGAGCATAAAAAGGAAAAGCAACAAATTTATTTATAAATATATCCGACTTACGTTTGTAAATCCTTTTAGTACTGAGGCTTATTTGGTTCCAGTGA

mRNA sequence

AAAGTGGCTCTCACAATGAGCTCTAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCGAAGAAGAAGAACCAAACGATCTCTAACCCATTCCCGTCGTCGCTTCCACCGCCGTCACAATGCAGGCTGCCGGCCGGGGGATTCGACTCTCGGCTGCTCCGAAGTCTCCACCAAATTGGAAGCTCTGCAGAGCCTCATCCCGCCGCAATCCGCCGCTGGACACGGCCAACCACGGCAAGCGGATGAGTTGTTCAAGGACACCGCCGACTACATTGTTGTTTTGAAAACCCAAGTCGTTATCTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCAGTGACTCCCCAGACGCCGTCGTTTCATAGTTAAACGTCGCCGTTTCATAGTTCTCTCTCTCTCTCTCTCTCTTTTTTTCTTTTTTTCTTTTTTCTTTTTCTTTTTTTTTACTTTATGTAATTATGAGAGAAAAATAAAACTTGAAAAAAAAAATCAAAGAAAATAGATCATTTTGCGTTTGTTAATTTCTTCCCTCTTGGTCAAATGTTATATTGATCCAACTATTTTCATTTTGGCCAAGTTCCTTCCAATTAGTTCTTTTCCTTTAGATATAGAAAGTGAAGAATTCTTAGATGAGAGCATAAAAAGGAAAAGCAACAAATTTATTTATAAATATATCCGACTTACGTTTGTAAATCCTTTTAGTACTGAGGCTTATTTGGTTCCAGTGA

Coding sequence (CDS)

ATGAGCTCTAAAACCAACACACTCCCAAATCCTCTCAGAAATTACCGAAGAAGAAGAACCAAACGATCTCTAACCCATTCCCGTCGTCGCTTCCACCGCCGTCACAATGCAGGCTGCCGGCCGGGGGATTCGACTCTCGGCTGCTCCGAAGTCTCCACCAAATTGGAAGCTCTGCAGAGCCTCATCCCGCCGCAATCCGCCGCTGGACACGGCCAACCACGGCAAGCGGATGAGTTGTTCAAGGACACCGCCGACTACATTGTTGTTTTGAAAACCCAAGTCGTTATCTTGCAGAAGCTGGTTGATTTTTTTGGATCCGCCTGCAGTGACTCCCCAGACGCCGTCGTTTCATAG

Protein sequence

MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSPDAVVS
Homology
BLAST of IVF0009687 vs. ExPASy TrEMBL
Match: A0A5D3BNP5 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002510 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.3e-57
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQS 60
           MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQS
Sbjct: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQS 60

Query: 61  LIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSPDAVVS 118
           LIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSPDAVVS
Sbjct: 61  LIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSPDAVVS 117

BLAST of IVF0009687 vs. ExPASy TrEMBL
Match: A0A6J1JTK8 (uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.5e-14
Identity = 63/114 (55.26%), Postives = 70/114 (61.40%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCS-------EVST 60
           M+ KT TL N      R RTKRSL  S  R    H  G     S    S       +VS 
Sbjct: 1   MTPKTYTLTN-----LRTRTKRSLPDSAVRAPNPHEYGETTSSSPCSSSSDDDDDDDVSA 60

Query: 61  KLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA 108
           KLEALQSLIP QSA    + RQ ++LFK+TADYIV+LKTQVVILQKLVDFFGSA
Sbjct: 61  KLEALQSLIPAQSA----EARQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA 105

BLAST of IVF0009687 vs. ExPASy TrEMBL
Match: A0A6I9UIV7 (uncharacterized protein LOC105177360 OS=Sesamum indicum OX=4182 GN=LOC105177360 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.1e-13
Identity = 50/96 (52.08%), Postives = 66/96 (68.75%), Query Frame = 0

Query: 25  THSRRRFHRRHNAGCRPGDSTLG---CSEVSTKLEALQSLIPPQSAAGHGQPRQADELFK 84
           T  RR   R  N+  RP ++ +G    S VS KLEAL+SLIP Q A       +A++LFK
Sbjct: 11  TALRRLRRRSSNSKRRPAEACIGGGAASSVSEKLEALRSLIPSQDA-----EIKAEQLFK 70

Query: 85  DTADYIVVLKTQVVILQKLVDFFGSACSDSPDAVVS 118
           +TADYIV+LKTQV++LQKLVDF+G+    +PDAV+S
Sbjct: 71  ETADYIVLLKTQVLVLQKLVDFYGAQPQHNPDAVIS 101

BLAST of IVF0009687 vs. ExPASy TrEMBL
Match: A0A4D9BV93 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_007780 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.4e-11
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 0

Query: 19  RTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAAGHGQPRQADE 78
           R KR L++S RR  +R      P +ST   S VS KL AL+SLIP  S  G  +P   D+
Sbjct: 15  RLKRRLSNSSRRLRKRQLC---PRNSTNSDSSVSGKLAALRSLIP--SEIGDAKP---DQ 74

Query: 79  LFKDTADYIVVLKTQVVILQKLVDFFGSACSDSPDAV 116
           LF +TADYIV+LKTQV++LQKLVDF+GS   ++ D V
Sbjct: 75  LFLETADYIVLLKTQVLVLQKLVDFYGSQSQENRDGV 103

BLAST of IVF0009687 vs. ExPASy TrEMBL
Match: A0A103YHA6 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_012550 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 47/103 (45.63%), Postives = 66/103 (64.08%), Query Frame = 0

Query: 9   PNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAA 68
           P  L+N+  R++ R  + S+ R  R H+       +    S VS KLEAL++LIP Q   
Sbjct: 5   PRRLKNFAPRKSLRGSSGSQHRRCRSHH----KNSTITTSSSVSDKLEALKNLIPAQEVD 64

Query: 69  GHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDS 112
           G   P  AD+LF++TADYI++L+TQV +LQKLVDF+GS+ S S
Sbjct: 65  G-AAPSSADQLFQETADYILLLRTQVSVLQKLVDFYGSSSSSS 102

BLAST of IVF0009687 vs. NCBI nr
Match: KAA0039441.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa] >TYK00630.1 transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 229 bits (583), Expect = 1.81e-75
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQS 60
           MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQS
Sbjct: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCSEVSTKLEALQS 60

Query: 61  LIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSPDAVVS 117
           LIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSPDAVVS
Sbjct: 61  LIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSPDAVVS 117

BLAST of IVF0009687 vs. NCBI nr
Match: KAG7016112.1 (hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105 bits (261), Expect = 1.77e-26
Identity = 71/119 (59.66%), Postives = 79/119 (66.39%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRP------GDSTLGC------ 60
           MS KTNTL N      R  TKRSL  SRRRFHRRH +  R       G++T         
Sbjct: 1   MSPKTNTLTNL-----RTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGETTSSSPFSDDD 60

Query: 61  SEVSTKLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA 107
            +VS KLEALQSLIP QSA G    RQ ++LFK+TADYIV+LKTQVVILQKLVDFFGSA
Sbjct: 61  DDVSAKLEALQSLIPAQSAEG----RQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA 110

BLAST of IVF0009687 vs. NCBI nr
Match: KAG6578552.1 (hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104 bits (259), Expect = 3.56e-26
Identity = 71/119 (59.66%), Postives = 78/119 (65.55%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRP------GDSTLGC------ 60
           MS KTNTL N      R  TKRSL  SRRRFHRRH +  R       G +T         
Sbjct: 1   MSPKTNTLTNL-----RTTTKRSLPDSRRRFHRRHYSAVRAPNPHENGQTTSSSPFSDDD 60

Query: 61  SEVSTKLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA 107
            +VS KLEALQSLIP QSA G    RQ ++LFK+TADYIV+LKTQVVILQKLVDFFGSA
Sbjct: 61  DDVSAKLEALQSLIPAQSAEG----RQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA 110

BLAST of IVF0009687 vs. NCBI nr
Match: XP_022993697.1 (uncharacterized protein LOC111489609 [Cucurbita maxima])

HSP 1 Score: 87.0 bits (214), Expect = 2.05e-19
Identity = 63/114 (55.26%), Postives = 70/114 (61.40%), Query Frame = 0

Query: 1   MSSKTNTLPNPLRNYRRRRTKRSLTHSRRRFHRRHNAGCRPGDSTLGCS-------EVST 60
           M+ KT TL N      R RTKRSL  S  R    H  G     S    S       +VS 
Sbjct: 1   MTPKTYTLTNL-----RTRTKRSLPDSAVRAPNPHEYGETTSSSPCSSSSDDDDDDDVSA 60

Query: 61  KLEALQSLIPPQSAAGHGQPRQADELFKDTADYIVVLKTQVVILQKLVDFFGSA 107
           KLEALQSLIP QSA    + RQ ++LFK+TADYIV+LKTQVVILQKLVDFFGSA
Sbjct: 61  KLEALQSLIPAQSA----EARQTEQLFKETADYIVLLKTQVVILQKLVDFFGSA 105

BLAST of IVF0009687 vs. NCBI nr
Match: XP_011098783.1 (uncharacterized protein LOC105177360 [Sesamum indicum])

HSP 1 Score: 84.7 bits (208), Expect = 1.57e-18
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 0

Query: 29  RRFHRRH-NAGCRPGDSTLG---CSEVSTKLEALQSLIPPQSAAGHGQPRQADELFKDTA 88
           RR  RR  N+  RP ++ +G    S VS KLEAL+SLIP Q A       +A++LFK+TA
Sbjct: 14  RRLRRRSSNSKRRPAEACIGGGAASSVSEKLEALRSLIPSQDAE-----IKAEQLFKETA 73

Query: 89  DYIVVLKTQVVILQKLVDFFGSACSDSPDAVVS 117
           DYIV+LKTQV++LQKLVDF+G+    +PDAV+S
Sbjct: 74  DYIVLLKTQVLVLQKLVDFYGAQPQHNPDAVIS 101

BLAST of IVF0009687 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-08
Identity = 39/103 (37.86%), Postives = 57/103 (55.34%), Query Frame = 0

Query: 18  RRTKRSLTHSRRRFH----RRHNAGCRPGDSTLGCSEVSTKLEALQSLIPPQSAAGHGQP 77
           R  K   T  RRR +     R    C    S+ G   V  KL AL+SL+PP    G G  
Sbjct: 2   RTLKTQTTRGRRRANVSSRTRVLHTCCGNGSSDGGKTVMEKLLALKSLLPPPVNVGGG-- 61

Query: 78  RQADELFKDTADYIVVLKTQVVILQKLVDFFGSACSDSPDAVV 117
            + +ELF++TA+YIV L+TQVV+L+KL++ + ++     D V+
Sbjct: 62  -ETEELFQETAEYIVKLRTQVVVLKKLIEIYDNSSDQKKDVVL 101

BLAST of IVF0009687 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-08
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 0

Query: 45  TLGCSEVSTKLEALQSLIPPQSAAGHGQPRQ------------ADELFKDTADYIVVLKT 104
           T G  + S KL+AL+SL+PP S     Q RQ             ++LF++TADYIV L+ 
Sbjct: 24  TSGGEKFSEKLQALKSLLPPPSKMTE-QSRQDAYVEEDSSVGETEQLFQETADYIVRLRG 83

Query: 105 QVVILQKLVDFFGSA 108
           QVV+LQKL++ +GS+
Sbjct: 84  QVVVLQKLIEIYGSS 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BNP55.3e-57100.00Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A6J1JTK85.5e-1455.26uncharacterized protein LOC111489609 OS=Cucurbita maxima OX=3661 GN=LOC111489609... [more]
A0A6I9UIV76.1e-1352.08uncharacterized protein LOC105177360 OS=Sesamum indicum OX=4182 GN=LOC105177360 ... [more]
A0A4D9BV934.4e-1151.55Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_007780 PE=4 SV=1[more]
A0A103YHA61.3e-1045.63Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_012... [more]
Match NameE-valueIdentityDescription
KAA0039441.11.81e-75100.00transcription factor UPBEAT1-like [Cucumis melo var. makuwa] >TYK00630.1 transcr... [more]
KAG7016112.11.77e-2659.66hypothetical protein SDJN02_21216, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6578552.13.56e-2659.66hypothetical protein SDJN03_23000, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022993697.12.05e-1955.26uncharacterized protein LOC111489609 [Cucurbita maxima][more]
XP_011098783.11.57e-1853.76uncharacterized protein LOC105177360 [Sesamum indicum][more]
Match NameE-valueIdentityDescription
AT3G29370.11.2e-0837.86unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G39240.12.6e-0844.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..36
NoneNo IPR availablePANTHERPTHR33124:SF70SUBFAMILY NOT NAMEDcoord: 18..110
IPR044660Transcription factor IBH1-likePANTHERPTHR33124TRANSCRIPTION FACTOR IBH1-LIKE 1coord: 18..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009687.2IVF0009687.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated