IVF0009429 (gene) Melon (IVF77) v1

Overview


Name	IVF0009429
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RRM domain-containing protein
Location	chr03: 3476278 .. 3481062 (-)
RNA-Seq Expression	IVF0009429
Synteny	IVF0009429

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAAATAACGTTTCCCTTTTCCACGATTTTTCTCTCTCGTCCTCCCCGATTCTGTTCTCCCTTCACCGCCAATTTCGAAGTTTTCAGCGTCGATCACCCCTTTCTCCGCCGCTGTCATAGTTGTTCGATCTCCCTCCGTCAGTGAAGATGCGCATAATCTAGGCCAGAAACTCACGGATACCAAAATGATCTGAATGCTTGTTTGTTCTTCATGGTGAATTTTTTTCTCTTTTGTTGTGTCTTGTAGTTCTTAATCTTATTTTACAGTATGAACAATTAGGCTAACTCCTTTAATGGCCGTATTAGATCTCTTATTAGAGATGGGATCGGCGAAGGATGAGCAATTTTCCATGTTTGAGGAGAAGGTAAAACGGACTGTGTATGTTGATAATCTCTCTCCTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAATGTCCATTTTATTCCAAATTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTCGAAGGAGGCGAAATCTGTGATCGCCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGCAGAAATGTTTGATGATCGTCCTGTAAAGCCTGGTAGGAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTACGAAGAAACATGTGGCTGAAGCTGCATTTTTGCTCAAGGTATGAATTTCAGAATCTCAGTCTCTCAACTTGAATTCCAATTTAGTGCTTAAGTGATTGCATTTATGAACTTTAATTTGTGATTCTTAGGCGATGGTTGATATTTATTAGATGGATGTTTGTTAATTAAGCACAACGTGGCACAGCTGACAAAAGTAAGAGGTTAGTTAGACAAAATGAAGGGACAAATTCAATCTGCCTAGTAGATTGTTGTCACTCGATTCTGTTTAGCTATCCTCTCTCTCGTCAACCATTTTTTTGTCATATTCTGCTCAATCAATCTATTACCGTTTGTTTATCTAATAAATACATCACATTATCAGTGGATGATAATCGAAAGTAGTATGTAATTAGATCCTTTTAAGTTTAAAATTAAATAAATACAGACCATTAACATTCGGACTTGATTTTTAATATGGTCAAATTATAAGATTGGTTTCACAACTTTGAGATTTTCCCTTGATTATCTAGTTAATATTAGTGCTGTTGATGCATAGCCGGGCGCTCGCCAGAGGCGAGAAAGTACCTAAGATAAGAAGCACTTTTAGCAAAGGGCTTGCCTTTCACACCTTTTAGTTGCCTTGAACATATGTGCAAGGCAACGCAGACGCTCGTCTTGTCAATTGTTCAACTTACATTTTTAGCAAAAAAAAATTCATTCTCCAATACTTTGATTAAGAGGAAGTATTGAAGTTTGTAAGGTAGAATTTGAAAGATCAAAGGATGGAAGAAAAATTGAAGAGAAAAAGAGTAAAAGAAGTAGAATTTATAGTTTAATATTATTATTTTATTAACTGCATCCTGATTCACTCCAATAATCGACTCCTTTTTTGTTGCCTCTTATTATCATGTATAATTACAGTTTTAAAATTAGTAATTATTTTGTTATATTTTCTGTTATTCTGTTTTGATAATACTGTACTGTAGCAGAGTATTATAAATACTCTTAATTACCATCAGATTTAATCAACGAGAATACACTTTAGTTATTAACCATTGGGCATTAGTTTTAAAATAAGACACCCTTTGGATGTCTACTCAATCTACCCCCTGACTATAAACATCTAAAAATATTCGGTTGTGCCTGTTACCCTTTACTAAAACAATACAATTATCATTAGCTCCAACCAAAAACCTCTCACTGCATCTTCCTTGGTTATCCCTTTGACTACAAAGGTTACATGTGTTACAATATGAGCATTGGAAAATTTTTCATACCTAGACATGTCATCTTTGATGGGACTGTTTTTCCCTTCTCAATAACCCCACAAAACAGCCCCACAAAAGATAACCATACAAAACCTATAAAACCCCATCAAATACCTTTATCCCTATTCCTAAAAGATTCCCCACCTATTCCTAGTATGAGTAATAAAAGTGCTATGCCATCTATGCCAACAATCAGTTCTTCACAAACAGATGAGTCCTATCTAAACAGTGAACTGAATACTGAAACTGAAATGCACACAAATGCACCCATCATAAATGCCCATCCAAAGCAAACCAGAAGCAAATCTGGTATATCAAAGAAGAAAGTTTTTGTTGCTGCAACACATCTTCCCAAAAATTCTGTTGATGAAAATGAACCAAGCTCTTACACCCAAGCATCTAAAGATTTAGTTTGGCAAAATGCAATGAAAGAAGAATATGATGCTCTACTGAAACAAGGAACATGGAAACTCACCAGTCTACCACCAAACAAACCAGCCATTGGCTGCGAATGGGTATACAAAATAAGAAGAAATCCCGATGGAACCATTACTAGACACAAAGCAAGATTAGTTGCCAAGGGATACCATCAACAGGAAGGCATAGACTTTGAAGAGACCTTTATCCCAATTGTAAAGAAACCTACTGTTCGGATAGTTCTATCTTTAGCTACACATTTTGAATGGAAACTAAGGCAACTTGATGTTAAAAATTCCTTTTTACATGGCGAACTCCGTGAAGAAGTCTATATGCAACAACCACAAGGTTTTGTTGACAAAACAAGACCAAACCTAGTGTGCAAACTCAGAAAATCATTATATGGCCTCAAACAAGCTCCTCGAGCTTGGTTTGAATGTTTCACAGCTCACCTATTGACACTTGGCTTTAATGCTTCGAATGACAATAGCTCATTGTTTGTTCGAAAAATTGGAAAATCTACCACTTATCTCCTACTTTATGCAGATGACATCATAATAACAGGCAACAACCATCCATACATTGATGTGCTAATCAGTCAGCTGCAGCAGAAGTTTGATACAACTGACTTGGGAATGTCGAAATATTTTCTGGGGCTTGAAATCCTGAGGAACTCATCTGGTATCTTTGTCACACAAACAAAATATGCTAAGGATGTACTACAAAGGTTTGGAATGAATGGATGTAAACCATGTAATACTCCAATTGCTATACATTCCTTTAGTGACAAACCAGACGATTCATGTTCAAATGAAGATGTCAACCTATAGAACTATTATTGGAGCCCTCCGATATCTCTCCTTTACTCGACCAGACATCATCTTCTCAGTAAGCAAACTCTCACAGTTAATGCACTCACCTGCCTATTGCCATCTTACAGCAGCCAAAAGAGTACTAAGATACATCAGTGGAACCACTTCAAAAGGCATACTCTTCAAAAAGTCCATAAATCCATTCAGAGTAAATGCATTCTCAGATTTAGATTGGGCCGGAAATAATCCTATATCATGGGTTACCAAAAAGTAGTCCACTGTATCTTGAAGTTCAACCGAAGCTGAATATAGAGCCCTTGCAACAACAACTTCTGAAATTTTTTGGATCCGACAACTCCTTCGAGATTTAGATGTATTTGGAAGAGAACCTCCTTGTTTATGGCGTGACAACAAGTCTGTCTTCCAACTTGCTCATAACCCTGTCTTCCATGGTCAAACCCAACACAGAAGTGGATTTTCACTTTATAACGGAAAAAGTTGTCCAAAATGACATTACACTGCTGTACATTCCCTCCACAGAACAGCTCGCTTATATATTCACAAAACCTCTCACTATTGATTGCTTCCACACTCTTCGATCCAAACTTATGCCTTAAGCCTAAAGTGCATCAGTTTGAGGAGGATATTATCATGTATAATTACAGTTTTAAAATTAGTTATTATTTTTTGATAATACTGTACTGTAGCAGAGTATTATAAATACTCTTAATTACCATCAGATTTGATCAATGAGAATACACTTCAGTTATTAACCATTGGGCATTAGTTTTCACCTCTTACCTTTAGGCGATTAAAAAGTTTGTCACCTTTAGGTGGCACCTTGGACCTTGAAAACACCGGTTCATATAATTAACTCTTTGGTAGGTCTCCTCAACTTTTCTGTTGTGTTTTATAGGTGTCTATTGTGAAACCCAATATTCCCGTAGGTTTAGTTTTTTCATGCTTTTGCACCAAACACACTTGAAAATTGAAATCAACCCATATGGATACCGGCGTATTGCTCAAGTAAGTATTAAGCTAGCGTAGTTAACAACAGGTTTGTTAGGCTCGAAGTTCAAATGTTTGACACTTTTTGAAGTACAAAAGATTAAAGAGATACAAACTTGGAAGCCGGGGGTCTATTGGAAAACGTTTAGAATAATGGGCTAAGTAAATGGATTCTAAAAGTTCAGGTTTGTCCAATTTCTTTGCAGCAACATTTGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACGCTGAGAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAAAATTATAATATGCGAGTTTCAGATGATTAATGCCTTTGAAGCCTTGCTTTTGTAACCTCTTAATGCCACTGATTTTTACCTGTAAATTTGTACAAATTGTCATTTATATGGCTGAATAGAGATGAATTAGAGACTTCTTTTGTGATTTAGATTTTAGAGGGAGAAAAACAAATATTTAGTATAATACTCCTAACAACACTCTTGGCATTTGTTTTAAAAGAAAAACATTGTATTTTCCCCAT

mRNA sequence

CCTAAATAACGTTTCCCTTTTCCACGATTTTTCTCTCTCGTCCTCCCCGATTCTGTTCTCCCTTCACCGCCAATTTCGAAGTTTTCAGCGTCGATCACCCCTTTCTCCGCCGCTGTCATAGTTGTTCGATCTCCCTCCGTCAGTGAAGATGCGCATAATCTAGGCCAGAAACTCACGGATACCAAAATGATCTGAATGCTTGTTTGTTCTTCATGATCTCTTATTAGAGATGGGATCGGCGAAGGATGAGCAATTTTCCATGTTTGAGGAGAAGGTAAAACGGACTGTGTATGTTGATAATCTCTCTCCTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAATGTCCATTTTATTCCAAATTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTCGAAGGAGGCGAAATCTGTGATCGCCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGCAGAAATGTTTGATGATCGTCCTGTAAAGCCTGGTAGGAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTACGAAGAAACATGTGGCTGAAGCTGCATTTTTGCTCAAGCAACATTTGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACGCTGAGAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAAAATTATAATATGCGAGTTTCAGATGATTAATGCCTTTGAAGCCTTGCTTTTGTAACCTCTTAATGCCACTGATTTTTACCTGTAAATTTGTACAAATTGTCATTTATATGGCTGAATAGAGATGAATTAGAGACTTCTTTTGTGATTTAGATTTTAGAGGGAGAAAAACAAATATTTAGTATAATACTCCTAACAACACTCTTGGCATTTGTTTTAAAAGAAAAACATTGTATTTTCCCCAT

Coding sequence (CDS)

ATGGGATCGGCGAAGGATGAGCAATTTTCCATGTTTGAGGAGAAGGTAAAACGGACTGTGTATGTTGATAATCTCTCTCCTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAATGTCCATTTTATTCCAAATTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTCGAAGGAGGCGAAATCTGTGATCGCCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGCAGAAATGTTTGATGATCGTCCTGTAAAGCCTGGTAGGAAGATTAGCTTTAGATGGCTGGAAAGTGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTACGAAGAAACATGTGGCTGAAGCTGCATTTTTGCTCAAGCAACATTTGGCGGAAGAGGAAAAGCTTGCAAAGCAGCAACAAGAAACGCTGAGAGGAAACTACAAGAAATATGAGATTGTAGATAGTGTAATGGCCGATGGAACTGCCCGCAGGTTAGCAAAAAATTATAATATGCGAGTTTCAGATGATTAA

Protein sequence

MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSSQCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWLESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVMADGTARRLAKNYNMRVSDD

Homology

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BLAST of IVF0009429 vs. ExPASy TrEMBL
Match: A0A1S3B3J3 (uncharacterized protein LOC103485592 OS=Cucumis melo OX=3656 GN=LOC103485592 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 3.0e-105
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60
           MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180
           ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKNYNMRVSDD 200
           ADGTARRLAKNYNMRVSDD
Sbjct: 181 ADGTARRLAKNYNMRVSDD 199

[Close]

BLAST of IVF0009429 vs. ExPASy TrEMBL
Match: A0A0A0KAE7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013320 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.5e-99
Identity = 187/199 (93.97%), Postives = 195/199 (97.99%), Query Frame = 0


Query: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60
           MGS KDEQF+MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV+VHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE EMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180
           ESDDPDFEVARQIKRL+KKHVAEAAFL+KQH+AEEEKLAKQQQETL+GNYKKYEIVDSVM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKNYNMRVSDD 200
           ADGTARRLAK+YNMR+SDD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]

BLAST of IVF0009429 vs. ExPASy TrEMBL
Match: A0A6J1KVQ1 (uncharacterized protein LOC111498019 OS=Cucurbita maxima OX=3661 GN=LOC111498019 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.4e-88
Identity = 165/199 (82.91%), Postives = 184/199 (92.46%), Query Frame = 0


Query: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60
           MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSS
Sbjct: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEA SVI+VI+QFPFMMSGMPRPVRA PAE EMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180
             +DPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+GNYKKYEI++ VM
Sbjct: 121 GKEDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKGNYKKYEILEGVM 180

Query: 181 ADGTARRLAKNYNMRVSDD 200
            DGTARRLA+ YNMRV+DD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of IVF0009429 vs. ExPASy TrEMBL
Match: A0A6J1H6P8 (uncharacterized protein LOC111460615 OS=Cucurbita moschata OX=3662 GN=LOC111460615 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 7.5e-88
Identity = 166/199 (83.42%), Postives = 182/199 (91.46%), Query Frame = 0


Query: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60
           MGSA DEQ+  FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSS
Sbjct: 1   MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEA SVI++IAQFPFMMSGMPRPVRA PAE EMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180
             DDPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+ NYKKYEIV+ VM
Sbjct: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180

Query: 181 ADGTARRLAKNYNMRVSDD 200
            DGTARRLA+ YNMRV+DD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of IVF0009429 vs. ExPASy TrEMBL
Match: A0A6J1DB90 (uncharacterized protein LOC111018537 OS=Momordica charantia OX=3673 GN=LOC111018537 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 1.0e-84
Identity = 160/199 (80.40%), Postives = 179/199 (89.95%), Query Frame = 0


Query: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60
           MGSA +EQF+ FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPNY EP+NSS
Sbjct: 1   MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSS 60

Query: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120
           QCALVEMKD KEAKSVI+VIA+FPFM+SGMPRPVRARPAE EMFDDRP+KPG KISF WL
Sbjct: 61  QCALVEMKDLKEAKSVISVIAEFPFMISGMPRPVRARPAEVEMFDDRPIKPGSKISFSWL 120

Query: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180
           + +DPDF+VA+++K  T+KH AE AFLLKQ L EEEKLAKQQQE L+GNYKK+EIV+SVM
Sbjct: 121 DQNDPDFQVAKKMKLFTRKHAAETAFLLKQQLLEEEKLAKQQQEVLKGNYKKHEIVESVM 180

Query: 181 ADGTARRLAKNYNMRVSDD 200
            DGTARRLAK Y+MRV DD
Sbjct: 181 TDGTARRLAKCYDMRVFDD 199

[Close]

BLAST of IVF0009429 vs. NCBI nr
Match: XP_008441485.1 (PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo])

HSP 1 Score: 389 bits (1000), Expect = 2.23e-136
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60
           MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180
           ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKNYNMRVSDD 199
           ADGTARRLAKNYNMRVSDD
Sbjct: 181 ADGTARRLAKNYNMRVSDD 199

[Close]

BLAST of IVF0009429 vs. NCBI nr
Match: XP_004138411.1 (uncharacterized protein LOC101221287 [Cucumis sativus] >KGN45809.1 hypothetical protein Csa_005005 [Cucumis sativus])

HSP 1 Score: 370 bits (951), Expect = 6.59e-129
Identity = 187/199 (93.97%), Postives = 195/199 (97.99%), Query Frame = 0


Query: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60
           MGS KDEQF+MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVV+VHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE EMFDDRPVKPGRKISFRWL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180
           ESDDPDFEVARQIKRL+KKHVAEAAFL+KQH+AEEEKLAKQQQETL+GNYKKYEIVDSVM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKNYNMRVSDD 199
           ADGTARRLAK+YNMR+SDD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]

BLAST of IVF0009429 vs. NCBI nr
Match: XP_038886330.1 (uncharacterized protein LOC120076542 [Benincasa hispida])

HSP 1 Score: 356 bits (913), Expect = 4.09e-123
Identity = 179/199 (89.95%), Postives = 189/199 (94.97%), Query Frame = 0


Query: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60
           MGS KDEQF+MFEEKVKRTVYVDNLSP VTEPVLRTALDQFGTVV+VHFIPNYTEPIN+S
Sbjct: 1   MGSMKDEQFAMFEEKVKRTVYVDNLSPHVTEPVLRTALDQFGTVVSVHFIPNYTEPINTS 60

Query: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120
           QCALVEMKD KEAKSVI+VIAQFPFMMSGMPRPVRARPAE EMFDDRPVKPGRKISF WL
Sbjct: 61  QCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFTWL 120

Query: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180
           E DDPDFEVA+++K LT+KHVAEAAFLLK HLAEEEKLAKQQQE L+GNYKKYEIV+SVM
Sbjct: 121 EKDDPDFEVAKKMKLLTRKHVAEAAFLLKHHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180

Query: 181 ADGTARRLAKNYNMRVSDD 199
           ADGTARRLAK YNMRVSDD
Sbjct: 181 ADGTARRLAKRYNMRVSDD 199

[Close]

BLAST of IVF0009429 vs. NCBI nr
Match: XP_023514768.1 (uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334 bits (856), Expect = 1.99e-114
Identity = 167/199 (83.92%), Postives = 183/199 (91.96%), Query Frame = 0


Query: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60
           MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSS
Sbjct: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAE EMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180
             DDPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+ NYKKYEIV+ VM
Sbjct: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180

Query: 181 ADGTARRLAKNYNMRVSDD 199
            DGTARRLA+ YNMRV+DD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of IVF0009429 vs. NCBI nr
Match: XP_023004840.1 (uncharacterized protein LOC111498019 [Cucurbita maxima])

HSP 1 Score: 332 bits (852), Expect = 8.09e-114
Identity = 165/199 (82.91%), Postives = 184/199 (92.46%), Query Frame = 0


Query: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60
           MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSS
Sbjct: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60

Query: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120
           QCALVEMKDSKEA SVI+VI+QFPFMMSGMPRPVRA PAE EMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEANSVISVISQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120

Query: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180
             +DPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+GNYKKYEI++ VM
Sbjct: 121 GKEDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKGNYKKYEILEGVM 180

Query: 181 ADGTARRLAKNYNMRVSDD 199
            DGTARRLA+ YNMRV+DD
Sbjct: 181 TDGTARRLARRYNMRVADD 199

[Close]

BLAST of IVF0009429 vs. TAIR 10
Match: AT1G05970.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-50
Identity = 95/195 (48.72%), Postives = 140/195 (71.79%), Query Frame = 0


Query: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60
           M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120
              LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE  MF D+P KPGR + FRW+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180
           + +DPDF+ AR++KRL +KH AE +F+LK+ L E EKL+KQQ ET   ++KK+E++D ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 181 ADGTARRLAKNYNMR 196
            DG A++LA  Y+++
Sbjct: 181 YDGVAQKLAGRYDLK 195

[Close]

BLAST of IVF0009429 vs. TAIR 10
Match: AT1G05970.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 192.2 bits (487), Expect = 4.0e-49
Identity = 95/195 (48.72%), Postives = 139/195 (71.28%), Query Frame = 0


Query: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60
           M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120
              LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE  MF D+P KPGR + FRW+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180
           + +DPDF+ AR++KRL +KH AE +F+LK  L E EKL+KQQ ET   ++KK+E++D ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLK--LEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 181 ADGTARRLAKNYNMR 196
            DG A++LA  Y+++
Sbjct: 181 YDGVAQKLAGRYDLK 193

The following BLAST results are available for this feature:

BLAST of IVF0009429 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009429 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B3J3	3.0e-105	100.00	uncharacterized protein LOC103485592 OS=Cucumis melo OX=3656 GN=LOC103485592 PE=...	[more]
A0A0A0KAE7	1.5e-99	93.97	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013320 PE=4 SV...	[more]
A0A6J1KVQ1	4.4e-88	82.91	uncharacterized protein LOC111498019 OS=Cucurbita maxima OX=3661 GN=LOC111498019...	[more]
A0A6J1H6P8	7.5e-88	83.42	uncharacterized protein LOC111460615 OS=Cucurbita moschata OX=3662 GN=LOC1114606...	[more]
A0A6J1DB90	1.0e-84	80.40	uncharacterized protein LOC111018537 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of IVF0009429 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441485.1	2.23e-136	100.00	PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]	[more]
XP_004138411.1	6.59e-129	93.97	uncharacterized protein LOC101221287 [Cucumis sativus] >KGN45809.1 hypothetical ...	[more]
XP_038886330.1	4.09e-123	89.95	uncharacterized protein LOC120076542 [Benincasa hispida]	[more]
XP_023514768.1	1.99e-114	83.92	uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]	[more]
XP_023004840.1	8.09e-114	82.91	uncharacterized protein LOC111498019 [Cucurbita maxima]	[more]

BLAST of IVF0009429 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05970.2	1.2e-50	48.72	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G05970.1	4.0e-49	48.72	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 19..97 e-value: 8.0E-5 score: 32.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 20..78 e-value: 1.2E-7 score: 31.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 18..101 score: 11.537011
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 19..95 e-value: 9.0E-13 score: 49.9
None	No IPR available	PANTHER	PTHR36309	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 6..198
None	No IPR available	CDD	cd00590	RRM_SF	coord: 20..78 e-value: 4.92577E-9 score: 49.2257
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 10..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009429.1	IVF0009429.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding