IVF0009428 (gene) Melon (IVF77) v1

Overview


Name	IVF0009428
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	30S ribosomal protein S11, chloroplastic
Location	chr09: 4028813 .. 4030757 (-)
RNA-Seq Expression	IVF0009428
Synteny	IVF0009428

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATTGTAATTCTTTCTACTTCTCCGTGTATAATGACAGATCAAGAAGCTCGACTACAGGGAATCAACGGTGAAATATTTTGTTATATATGTTAATCTTTATGATATTCAAATTATACACATAACATCCCTATTTGTAAAAAAAAGAAAAAAAAAAAAAGAAAAGAGGTGGTTTCATAGTTTATAATATCACTCCCCTTTCATTAATTGAGACTTTGAAAGGTGTTTCGTTTGGAATGATAGAGCAGAAAAGGATTTCTGAAGGTTGCATTACTGAACCACTTACCAATTATATGTTTTGGGTTTGTTTAGATAATGAGGATCCGGTTCTAGATTACGTTTTAGGAAGGATTCGACATAGTTTGATTCATATAATAAGTAATAGAGAGTTAAAATTTTAGTAAGTTGTTACGATTCAACAAAGACTCGAAGACATATAATTTATAGACTATAAAACAAAGATTCGAATGATTAGGTGAAGTAGTTTTTTCATGTGCAATATTCTTTTTTTGTAGGGAGATACAATTTGAAATAGAACATTTCAAGAAACTGATTTTCTTCCAATAAGTAGATTTGGAATTCGGATAAAGAATCAAAAATATGAAAATAAGGGCTTCCATTAGGAGAATTTGTGAAAAATGTCACCTGATCTTTAGTCAGAGACGAATTATGGTAAGTTGTTCCAATTTGAGACATGAATAAAGACAAGGATAATCTTTAAAAAAAAAAAACCCCTAAAGGCCACCCACAATATACACATAAAAAGAAATGAAAGGATCCATTTTGACATGAAATGGATATATCCATATATCTCTGACTTAGATTTATGAGATGAGAAAATATGGCAAAACCCATACCAAGAATCGGTTCATGTAGAAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTATTACAGATGTAATGGGTCAATCAATTTCTTGGTCCTTCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACTGCAACAGGAAATGCTATTTAGGTAGTAGTTGATCAAAGGATGCAACGAGCTGAAGTTATGATAAAGGGCCTCGGTCTCGGAAGAGATGCAACATTAAGAGCTATTTGGACGAGCGGTATACTATTCAGTTTCATACGGGATGTAACCCTTATGCCACATAGTGGCTGTAGTCCCCTTAAAAATGATGTGTGTCAAAATCAACGTTGAAGAGAAATTTCAAGAGAAATAAATAATTCAATGATTTTATAAAAAAAATATTACTATGGTTTGAGAGAAAATCAAAGTATCGACTCGGACACTAAAGTGGAAATGTGTTGAATCAAGAGTAGATAGTAAGTATCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGACAAAGGGGATACTATAGGCATTGCAATGCGAAAAGCTTTGCTTGGAGAAATAGATGGAACATGTATCATATGTGCAAAATTTGAAAAAATCCCACATGAATACTCTACCATAGTCGGTATTCAAGAATCAATACATGAAATTTGAATGAATTTGAAAGAAATTGTATTGAGAAATAATCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTAGATACGTAGCTGCTCAAGACATCATCTTACCACCTTTGGTGGAAATCGTTGATAATACACAACATATAGCTAACCTAATGGAACTAATGAATTTTTGTATTGAATTCAAGATTGAGAGGAATCATGGATATCATATATAAACGTCAAAGGACGCAAGTTATCCTATGGATGCTATATTCATGTCTGTTCGAAATGTTAATCATAGTATTCATTCTTATATAAATGGGAATGAAAAACAAGGTAGACTTTTTCTCGAAATATGGACCAATGGAAGTTTCACTCCTAAAGAAGCACTTCATGAAACCTCTTGA

mRNA sequence

ATGGGGATTGTAATTCTTTCTACTTCTCCGTGTATAATGACAGATCAAGAAGCTCGACTACAGGGAATCAACGATGTAATGGGTCAATCAATTTCTTGGTCCTTCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGTAGTAGTTGATCAAAGGATGCAACGAGCTGAAGTTATGATAAAGGGCCTCGGTCTCGGAAGAGATGCAACATTAAGAGCTATTTGGACGAGCGGTATACTATTCAGTTTCATACGGGATGACGCAAGTTATCCTATGGATGCTATATTCATGTCTGTTCGAAATGTTAATCATAGTATTCATTCTTATATAAATGGGAATGAAAAACAAGGTAGACTTTTTCTCGAAATATGGACCAATGGAAGTTTCACTCCTAAAGAAGCACTTCATGAAACCTCTTGA

Coding sequence (CDS)

ATGGGGATTGTAATTCTTTCTACTTCTCCGTGTATAATGACAGATCAAGAAGCTCGACTACAGGGAATCAACGATGTAATGGGTCAATCAATTTCTTGGTCCTTCGCCGGTACGTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCGTAGTAGTTGATCAAAGGATGCAACGAGCTGAAGTTATGATAAAGGGCCTCGGTCTCGGAAGAGATGCAACATTAAGAGCTATTTGGACGAGCGGTATACTATTCAGTTTCATACGGGATGACGCAAGTTATCCTATGGATGCTATATTCATGTCTGTTCGAAATGTTAATCATAGTATTCATTCTTATATAAATGGGAATGAAAAACAAGGTAGACTTTTTCTCGAAATATGGACCAATGGAAGTTTCACTCCTAAAGAAGCACTTCATGAAACCTCTTGA

Protein sequence

MGIVILSTSPCIMTDQEARLQGINDVMGQSISWSFAGTCGFKGTRRGTPFAVVVDQRMQRAEVMIKGLGLGRDATLRAIWTSGILFSFIRDDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS

Homology

[Close]

BLAST of IVF0009428 vs. ExPASy Swiss-Prot
Match: Q0G9I6 (30S ribosomal protein S11, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps11 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-22
Identity = 55/84 (65.48%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGR 82
           + DV+GQ +SWS AGTCGF+GTRRGTPFA           VVDQ MQRAEVMIKG GLGR
Sbjct: 43  VTDVLGQVVSWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGR 102

Query: 83  DATLRAIWTSGILFSFIRDDASYP 97
           DA LRAI  SGIL SF+RD    P
Sbjct: 103 DAALRAIRRSGILLSFVRDVTPMP 126

[Close]

BLAST of IVF0009428 vs. ExPASy Swiss-Prot
Match: Q4VZK2 (30S ribosomal protein S11, chloroplastic OS=Cucumis sativus OX=3659 GN=rps11 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.0e-22
Identity = 57/84 (67.86%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGR 82
           + DV G+ ISWS AGTCGFKGTRRGTPFA           VVDQ MQRAEVMIKG GLGR
Sbjct: 43  VTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRGVVDQGMQRAEVMIKGPGLGR 102

Query: 83  DATLRAIWTSGILFSFIRDDASYP 97
           DA LRAI  SGIL SFIRD    P
Sbjct: 103 DAALRAIRRSGILLSFIRDVTPMP 126

[Close]

BLAST of IVF0009428 vs. ExPASy Swiss-Prot
Match: A8SED6 (30S ribosomal protein S11, chloroplastic OS=Ceratophyllum demersum OX=4428 GN=rps11 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.5e-22
Identity = 55/84 (65.48%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGR 82
           + DV GQ +SWS AGTCGF+GTRRGTPFA           VVDQ MQRAEVMIKG GLGR
Sbjct: 43  VTDVRGQVVSWSSAGTCGFRGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGR 102

Query: 83  DATLRAIWTSGILFSFIRDDASYP 97
           DA LRAI  SGIL SF+RD    P
Sbjct: 103 DAALRAIRRSGILLSFVRDVTPMP 126

[Close]

BLAST of IVF0009428 vs. ExPASy Swiss-Prot
Match: A0ZZ68 (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps11 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.5e-22
Identity = 56/84 (66.67%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGR 82
           + DV G+ ISWS AGTCGFKGTRRGTPFA           VVDQ MQRAEVMIKG GLGR
Sbjct: 43  VTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGR 102

Query: 83  DATLRAIWTSGILFSFIRDDASYP 97
           DA LRAI  SGIL SF+RD    P
Sbjct: 103 DAALRAIRRSGILLSFVRDVTPMP 126

[Close]

BLAST of IVF0009428 vs. ExPASy Swiss-Prot
Match: Q2L937 (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.5e-22
Identity = 56/84 (66.67%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGR 82
           + DV G+ ISWS AGTCGFKGTRRGTPFA           VVDQ MQRAEVMIKG GLGR
Sbjct: 43  VTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGR 102

Query: 83  DATLRAIWTSGILFSFIRDDASYP 97
           DA LRAI  SGIL SF+RD    P
Sbjct: 103 DAALRAIRRSGILLSFVRDVTPMP 126

[Close]

BLAST of IVF0009428 vs. ExPASy TrEMBL
Match: A0A1J7FXT1 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_00094 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.9e-34
Identity = 93/188 (49.47%), Postives = 99/188 (52.66%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGR 82
           + DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAEVMIKG GLGR
Sbjct: 36  VTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAANAILTVADQGMQRAEVMIKGPGLGR 95

Query: 83  DATLRAIWTSG-----------ILFSFIR------------------------------- 142
           DA LRAI  SG           +L   I                                
Sbjct: 96  DAALRAIRRSGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTLVEPINLCIGLEI 155

Query: 143 --------------DDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTP 145
                          D SYP+DA+FMSVRN NHSIHSY+NGNEKQ  LFLEIWTNGS TP
Sbjct: 156 ARNRGYRIKTLTKFQDRSYPIDAVFMSVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTP 215

[Close]

BLAST of IVF0009428 vs. ExPASy TrEMBL
Match: A0A4Y7JDB8 (S1-like domain-containing protein OS=Papaver somniferum OX=3469 GN=C5167_005295 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 5.2e-30
Identity = 92/211 (43.60%), Postives = 99/211 (46.92%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGR 82
           + DV G+ +SWS AGTCGF+GTRRGTPFA           VVDQ MQRAEVMIKG GLGR
Sbjct: 222 VTDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGR 281

Query: 83  DATLRAIWTSGILFSF------------------IRD----------------------- 142
           DA LRAI  SGI  S                    RD                       
Sbjct: 282 DAALRAIRRSGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPGYVTAQDIISPPSVE 341

Query: 143 --------------------------------------DASYPMDAIFMSVRNVNHSIHS 145
                                                 D S+ +DA+FM VRN NHSIHS
Sbjct: 342 IVDTTQHIASLTEPMDLCIGLQIERNRGYRMKTPNNAQDGSFTIDAVFMPVRNANHSIHS 401

[Close]

BLAST of IVF0009428 vs. ExPASy TrEMBL
Match: A0A6A5MQ34 (Plastid-encoded RNA polymerase subunit alpha OS=Lupinus albus OX=3870 GN=Lal_00033201 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.1e-27
Identity = 95/250 (38.00%), Postives = 103/250 (41.20%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGR 82
           + DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAEVMIKG GLGR
Sbjct: 43  VTDVGGRVISWSSAGTCGFKGTRRGTPFAAQTAAANAILTVADQGMQRAEVMIKGPGLGR 102

Query: 83  DATLRAIWTSG----------------------------------------------ILF 142
           DA LRAI  SG                                              IL 
Sbjct: 103 DAALRAIRRSGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTLVGIQESVHEILM 162

Query: 143 S------------------FIR-------------------------------------- 145
           +                  F++                                      
Sbjct: 163 NLKEIVLRSNLYGTRDASIFVKGPGYVTAQDILLPPSVEIVDNTQHIANLTEPINFYIGL 222

[Close]

BLAST of IVF0009428 vs. ExPASy TrEMBL
Match: A0A6A5M3G7 (Plastid-encoded RNA polymerase subunit alpha OS=Lupinus albus OX=3870 GN=Lal_00024198 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 7.0e-27
Identity = 94/250 (37.60%), Postives = 102/250 (40.80%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGR 82
           + DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAEVMIKG GLGR
Sbjct: 43  VTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAANAILTVADQGMQRAEVMIKGPGLGR 102

Query: 83  DATLRAIWTSG----------------------------------------------ILF 142
           DA LRAI  SG                                              IL 
Sbjct: 103 DAVLRAIRRSGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTLVGIQESVHEILM 162

Query: 143 S------------------FIR-------------------------------------- 145
           +                  F++                                      
Sbjct: 163 NLKEIVLRSNLYETRDASIFVKGPGYVTAQDILLPPSVEIVDNTQHIANLTEPINFYIGL 222

[Close]

BLAST of IVF0009428 vs. ExPASy TrEMBL
Match: A0A4D6LC09 (Plastid-encoded RNA polymerase subunit alpha OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g531 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.0e-26
Identity = 95/267 (35.58%), Postives = 102/267 (38.20%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGR 82
           I DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAE+MIKG GLGR
Sbjct: 43  ITDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGR 102

Query: 83  DATLRAIWTSGILFSFIRD----------------------------------------- 142
           DA LRAI  SGIL +FIRD                                         
Sbjct: 103 DAALRAIRRSGILLNFIRDVTPMPHNGCQADTIGIAIRRILLGEIEGTCITRVKSEKIPH 162

Query: 143 ------------------------------------------------------------ 145
                                                                       
Sbjct: 163 EYSTIIGIEESVHEIFMNLKKIVLKSNMYGTQDAWISFKGPGYITAQDIILPPSVEIVDN 222

[Close]

BLAST of IVF0009428 vs. NCBI nr
Match: OIV92917.1 (hypothetical protein TanjilG_00094 [Lupinus angustifolius] >OIW20052.1 hypothetical protein TanjilG_32008 [Lupinus angustifolius])

HSP 1 Score: 152 bits (383), Expect = 7.09e-42
Identity = 93/188 (49.47%), Postives = 99/188 (52.66%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGR 82
           + DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAEVMIKG GLGR
Sbjct: 36  VTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAANAILTVADQGMQRAEVMIKGPGLGR 95

Query: 83  DATLRAIWTSG-----------ILFSFIR------------------------------- 142
           DA LRAI  SG           +L   I                                
Sbjct: 96  DAALRAIRRSGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTLVEPINLCIGLEI 155

Query: 143 --------------DDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTP 144
                          D SYP+DA+FMSVRN NHSIHSY+NGNEKQ  LFLEIWTNGS TP
Sbjct: 156 ARNRGYRIKTLTKFQDRSYPIDAVFMSVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTP 215

[Close]

BLAST of IVF0009428 vs. NCBI nr
Match: RZC57990.1 (hypothetical protein C5167_005295 [Papaver somniferum])

HSP 1 Score: 139 bits (349), Expect = 6.33e-36
Identity = 92/211 (43.60%), Postives = 99/211 (46.92%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGR 82
           + DV G+ +SWS AGTCGF+GTRRGTPFA           VVDQ MQRAEVMIKG GLGR
Sbjct: 222 VTDVRGRVVSWSSAGTCGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGR 281

Query: 83  DATLRAIWTSGILFSF------------------IRD----------------------- 142
           DA LRAI  SGI  S                    RD                       
Sbjct: 282 DAALRAIRRSGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPGYVTAQDIISPPSVE 341

Query: 143 --------------------------------------DASYPMDAIFMSVRNVNHSIHS 144
                                                 D S+ +DA+FM VRN NHSIHS
Sbjct: 342 IVDTTQHIASLTEPMDLCIGLQIERNRGYRMKTPNNAQDGSFTIDAVFMPVRNANHSIHS 401

[Close]

BLAST of IVF0009428 vs. NCBI nr
Match: KAF1876904.1 (hypothetical protein Lal_00033201 [Lupinus albus])

HSP 1 Score: 129 bits (324), Expect = 1.42e-32
Identity = 95/250 (38.00%), Postives = 103/250 (41.20%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGR 82
           + DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAEVMIKG GLGR
Sbjct: 43  VTDVGGRVISWSSAGTCGFKGTRRGTPFAAQTAAANAILTVADQGMQRAEVMIKGPGLGR 102

Query: 83  DATLRAIWTSG----------------------------------------------ILF 142
           DA LRAI  SG                                              IL 
Sbjct: 103 DAALRAIRRSGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTLVGIQESVHEILM 162

Query: 143 S------------------FIR-------------------------------------- 144
           +                  F++                                      
Sbjct: 163 NLKEIVLRSNLYGTRDASIFVKGPGYVTAQDILLPPSVEIVDNTQHIANLTEPINFYIGL 222

[Close]

BLAST of IVF0009428 vs. NCBI nr
Match: KAF1866200.1 (hypothetical protein Lal_00024198 [Lupinus albus])

HSP 1 Score: 128 bits (322), Expect = 2.77e-32
Identity = 94/250 (37.60%), Postives = 102/250 (40.80%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGR 82
           + DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAEVMIKG GLGR
Sbjct: 43  VTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAANAILTVADQGMQRAEVMIKGPGLGR 102

Query: 83  DATLRAIWTSG----------------------------------------------ILF 142
           DA LRAI  SG                                              IL 
Sbjct: 103 DAVLRAIRRSGQADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTLVGIQESVHEILM 162

Query: 143 S------------------FIR-------------------------------------- 144
           +                  F++                                      
Sbjct: 163 NLKEIVLRSNLYETRDASIFVKGPGYVTAQDILLPPSVEIVDNTQHIANLTEPINFYIGL 222

[Close]

BLAST of IVF0009428 vs. NCBI nr
Match: QCD86010.1 (DNA-directed RNA polymerase subunit alpha [Vigna unguiculata])

HSP 1 Score: 127 bits (318), Expect = 1.40e-31
Identity = 95/267 (35.58%), Postives = 102/267 (38.20%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFAV----------VVDQRMQRAEVMIKGLGLGR 82
           I DV G+ ISWS AGTCGFKGTRRGTPFA           V DQ MQRAE+MIKG GLGR
Sbjct: 43  ITDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGR 102

Query: 83  DATLRAIWTSGILFSFIRD----------------------------------------- 142
           DA LRAI  SGIL +FIRD                                         
Sbjct: 103 DAALRAIRRSGILLNFIRDVTPMPHNGCQADTIGIAIRRILLGEIEGTCITRVKSEKIPH 162

Query: 143 ------------------------------------------------------------ 144
                                                                       
Sbjct: 163 EYSTIIGIEESVHEIFMNLKKIVLKSNMYGTQDAWISFKGPGYITAQDIILPPSVEIVDN 222

[Close]

BLAST of IVF0009428 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 101.7 bits (252), Expect = 5.1e-22
Identity = 54/84 (64.29%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 23  INDVMGQSISWSFAGTCGFKGTRRGTPFA----------VVVDQRMQRAEVMIKGLGLGR 82
           + DV G+ ISWS AGTCGF+GTRRGTPFA           VVDQ MQRAEV IKG GLGR
Sbjct: 43  VTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGR 102

Query: 83  DATLRAIWTSGILFSFIRDDASYP 97
           DA LRAI  SGIL SF+RD    P
Sbjct: 103 DAALRAIRRSGILLSFVRDVTPMP 126

[Close]

BLAST of IVF0009428 vs. TAIR 10
Match: ATCG00740.1 (RNA polymerase subunit alpha )

HSP 1 Score: 91.7 bits (226), Expect = 5.3e-19
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 91  DDASYPMDAIFMSVRNVNHSIHSYINGNEKQGRLFLEIWTNGSFTPKEALHETS 145
           +D SYP+DA+FM V N NHSIHSY NGNEKQ  LFLEIWTNGS TPKEALH+ S
Sbjct: 166 EDRSYPIDAVFMPVENANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQAS 219

The following BLAST results are available for this feature:

BLAST of IVF0009428 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0G9I6	2.9e-22	65.48	30S ribosomal protein S11, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r...	[more]
Q4VZK2	5.0e-22	67.86	30S ribosomal protein S11, chloroplastic OS=Cucumis sativus OX=3659 GN=rps11 PE=...	[more]
A8SED6	6.5e-22	65.48	30S ribosomal protein S11, chloroplastic OS=Ceratophyllum demersum OX=4428 GN=rp...	[more]
A0ZZ68	6.5e-22	66.67	30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1...	[more]
Q2L937	6.5e-22	66.67	30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 ...	[more]

BLAST of IVF0009428 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1J7FXT1	5.9e-34	49.47	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_00094 PE=3 S...	[more]
A0A4Y7JDB8	5.2e-30	43.60	S1-like domain-containing protein OS=Papaver somniferum OX=3469 GN=C5167_005295 ...	[more]
A0A6A5MQ34	4.1e-27	38.00	Plastid-encoded RNA polymerase subunit alpha OS=Lupinus albus OX=3870 GN=Lal_000...	[more]
A0A6A5M3G7	7.0e-27	37.60	Plastid-encoded RNA polymerase subunit alpha OS=Lupinus albus OX=3870 GN=Lal_000...	[more]
A0A4D6LC09	2.0e-26	35.58	Plastid-encoded RNA polymerase subunit alpha OS=Vigna unguiculata OX=3917 GN=DEO...	[more]

BLAST of IVF0009428 vs. NCBI nr


Match Name	E-value	Identity	Description
OIV92917.1	7.09e-42	49.47	hypothetical protein TanjilG_00094 [Lupinus angustifolius] >OIW20052.1 hypotheti...	[more]
RZC57990.1	6.33e-36	43.60	hypothetical protein C5167_005295 [Papaver somniferum]	[more]
KAF1876904.1	1.42e-32	38.00	hypothetical protein Lal_00033201 [Lupinus albus]	[more]
KAF1866200.1	2.77e-32	37.60	hypothetical protein Lal_00024198 [Lupinus albus]	[more]
QCD86010.1	1.40e-31	35.58	DNA-directed RNA polymerase subunit alpha [Vigna unguiculata]	[more]

BLAST of IVF0009428 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00750.1	5.1e-22	64.29	ribosomal protein S11	[more]
ATCG00740.1	5.3e-19	75.93	RNA polymerase subunit alpha	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 52..144 e-value: 1.1E-13 score: 52.8
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 103..142
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 22..100 e-value: 1.5E-14 score: 54.3
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 22..96
None	No IPR available	PANTHER	PTHR11759:SF49	30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC	coord: 22..96
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 23..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009428.1	IVF0009428.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome