IVF0009398 (gene) Melon (IVF77) v1

Overview
NameIVF0009398
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptiontrafficking protein particle complex subunit 2-like
Locationchr11: 74121 .. 78555 (+)
RNA-Seq ExpressionIVF0009398
SyntenyIVF0009398
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAATTGCTACTCAGAATGGCGAACACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCAATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAGTATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGCTTTCCATTTTGTTTTTCATGTTTAGGCTGAATGTTTCCTTCACAAGATCGCCAATAAAAGGTGATATCGTTAATTACTTTAGTTTTGACTGTCATTAGTCGCTCATCTTTTTGGCATGACATGAAAGAGAGAGGATTCCGCCCAGCTGCATCAATTTATATTGCATGCGTCCCTTGACATTGTCCAAGACCTGGCATGGACTACTAGTGCCATGTGAGTTCGCATTCCTTCTAGTTCTTTATTAGATCATCGAGACGCCTCCTCTATCTTATTTTTCTTTTTGTTCTTTTCCCCTTTAAATTTCGCCTTAACTACCTTTTTGGATTTTATGCAGGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTCTATGTAACCGCTGGTCATATCCTTTAATGTCGAGAGGGTTTGTCAGGCACACTATGTTGGAAATTGTGTCAAATTTCATTAATGCACGCACCCGTAAAACTCAACTCTAAATTAATGAAAGTTTTATCTTTGAATCTTTTGCATCTGTACCCCACCCCCCACCATTGCATTACTGGTATATTGACTTATGGAATCTGCAATCAAACCTTTTCATTATACGAGATACATGGTTTCCTACGATTCAGGCATTCTAAATACATTTGAGAGATTAATTTCAGTTCGTAGTTCATATTGTTCCCTTCTTTTACCAATATTCTGATTTTCCTTTGACTATTCACTACATACGCGATTGATGTTACTTCACGACTCTCGCAATGACGATGGAATCAAGAGTTTTTTTCAAGAGGTTCATGAGCTTTACATAAAGGTAAGTTGGACATTTTTTCTTCTGTATCACTATTGTTATTGCTTGTGGTGCTTAGTGTGTGTATGTGTGTGTGTTTTTCAACAACACGCGGGGGAGTGTTGTGCTTAATTTTTCTATGTTATGTATATTATATTGGTTGATTGAAGTATATCTTAGTTGATTAAGTTACTTTTCCAAAGCTGGGAGGCATACTTTGATTCGGTCAGACATGAGTGGCATTCCCTTTTACTTATTTTCTTCGTTTAGAACCTGGTGGACATTGAAAAACTGATGTGTAACTTCCTTTGGGAAGAGGTGGAAGAAGGAAACAGACTGCAACGAGTTAGATGGGAGATCGATGAACTGGGGGAATTAAAATTTGTTATGAAAGCCCTATTAGCTAAATGGCTTTCGCATTTTGCTCTTGATTCTATTACCTTTTTGCACAAGGATATTGCTTGCAAGTTTGGGCCTCATCCCTTTGAGTGGTTGTCAGGTGGGATTAAAGGCATCGACTAGAATTTGTGGAAGGATATTTCTAACAAGCTGCCCTCTTTCTACCATTCTGTCTGTTGTGTGGTAGGGTAGAGGAGGGTGAGGAAGTATGATTCTGGGGTGATCAATGCTTGGGGATAGATAAACCTCTCTGCTTCCATTTCCTCATCTTTATCATTTATCCCTCTCTAGAAATCATTTTGTTTCTGGGTTTTTTGTTTGGTTGGGGAGCTTGGTTTCCTTTTTCTTCGGGTTTAACCGCTCTTTGACTGATAGGGAAGCTACAAATGTCATCTCTTTGCTGTCGTTGTTGGGGGAGTTTAACTTTAGATATGGGAGAAAGGATCTACTTGTCTGGAATCTCAATCCTCTTGAGGGATTCTTTTGTAATTCCATTTTTTTTGTCTGGTGAATCCTTCTCCTTCCCATTAGTATGTCTTTTCAGCCCTTCAGAGGAATAAGATTCTTGAGAAGGATAGATTCTTTACCTGGCAAATTTTACATAAATGTGTGAACATTTTGGATAGGCTCTCGAGGAGGAAGAGGTTATTGTTGTTAGGGGGCCCTTTTTTGTATTATGTTGGAAGGTCGGTGAAAACTTGGATCACATACTTTGGAGAGTTGCACACTATGTCTAGAATTTGTTCTTCCAGAAATTTGGTCTTGTGGTTGCCCATCAAAAGGACTTCAGAGTTACGATCGGGTAGTTCCCTTCCTCCTCCATCCTCCTTTTGTGAGAAAGGTCATATGCCTTGTATTTTTTTTTTTTTTTTAATTTCTATCTCAATGAAAGTGCTTGCAGTTGCATTATCTGAAAAAGAAGGAAAAAAAAAGGTTCTTGCTTAATGGAGTTATATATATATATATATGTAAAAACAGAACAGTTGTAAATAAGCAAATTGTATCACTCCAATATGAGCATAGATAAAAGGCATTAGTTATCATCTCAAAGGTCGATGATTTGATCTCACTTACAGTTGCTGAACTAAAAAAAAAAAGAAAAAGAAAAAAAAAGAAGAAATAATAATAATAATAATAAATAAATAAATAAATTGCATTCCTCGAGTCCTGATTGTGTATATTCATCAAAAAGCGTAACGGGTTGATTTGTTACAAGATCAAGTTGTCATTGTGAATGAAACATGAGATGGTGGGTGGTGAGGTTGGTTTATCTTTTTGAGAGCCCTTGTTGTTTGGCCATGTCAGGTGCTCAGATTTAAGGCTCCTTTAGATCCCTCCTAAGTGTTATTATTGTTTCCGTAGCACTGGAATGTGACCTATATCTTCAAGGATAGTCCTTCAGACCTATTTCTTCTAGGAAAATTTAATTGGTTTTTGGAAATAAAATTGATAGATTGACTTGAAATCATGTGCTAGAGTTACAAAGTATTGTTATTATCTAGTAGTGGTACGTTTTTAATAAGTTATATTAATAACGATTGAGTTGTTGAATGAACTATTTGTAGAAAAACTATGTTTATGACATACCAAGATTGTTTCCCTCCGAAGTGTCCTTTAGTGTTATCCTTTGAATTGATTGCACCACATAGACAAAATGGCCTAGAATAAGCAATAACGATTTCATGGCAAAAAAAAACGTAGCTCACCTAACATCTAACCCTGGGGTTCTAATCCCCCGAGTCCCTCTTGTACTCGAGTGTTAAATATTCATGTTAACTTGTCTCTCATCCTCTCCTGATTTTTATATCTATATTTTCTCTCTCTATTGGAGACTTTTTTCTTCCATTAGCCAATAAGACTTTTCCCGTCTAAGAAACCAATAAGCGTTTCTGTTTGAATAGAAGAAAAGTGGTGTAAACGGGAGTGTAATTCTTGTTCTGCTTACTTGTAACGGCTATCATAATAGTAGGTTCATGAGGGCCTCCCATCCCCAGCATTGTTTACGTTCTATTGGCAAAATTTCCCAATCAATGTAGGCTATTCTGCAACTGAAATTTAACTTTTCTTGATGATTCTAGTTTGATTTTACCCATTTGAAAACTTCTGTTACTACTCTCCTTGGTTGATTACTCTTTTGGATTTTAGCGCAGTTAGTATTCCTATCAAATTTTGCAAGTTTTCGTCAAGCTAGGATTTCAAGACCTTAAATTTCATTTTTCATGTTTGCCGTAACAGTAGATAAATAAAAGGTTTGGTACTTTGGTTTGATCACCTTCAGTCTACTCTCTAATTTTTGGAGCTTCATGGAAGATGCAACAGTGTTTTTGCAAAGATTTTGACTATAGTAAATAATTTTGAGGACTACTTGTCATATAATTTCATAATATTGTCCATTCCATTTGATAGGCAACGACAACAAGGGGCCTAAGCTCTGTATATAATGTTTCATAGTTAAGTATTTCCATGGATGTGATTTTTCGGCTTTGAATCAAACTTACTTGATACTCATCTATCGGAAGAATTATAAGTTAATCAATTCAAGACAATTAAACGCTGGGTAAGTCTTGGTTATTTGGTGGGCTTTGGTCTTCTATGTGTTCCCCCTGTTTTCAATGAATGGCTGTGGCATGAACCTTGTTGTGTTCCAGATATTTTTTCTGCATTGTTGCCCTGCACATGACTGAAATTGGCTTTGTGAATTTGCAGACTATACTCAATCCTCTCTACTTGCCTGGATCCCGCATCACGTCTTCACATTTTGACACAAAAGTTCGCGCACTCGCAAGGAAGTATCTCTAGTCATCACCTTCATTGCAGACCAAATGTGCTTTCATGACAATGCTTCGAAGTTTATAGTAGCCCTAAGTTTTCTTTTAACTGTACAACATTTTAATCTTTGCCATTTGTGGTCCTGACATCAATCAATTCAGTAGTTAAATAATTCTCAATGTGTAATATTGACTTTGGAATGGCTTGGTTACGAGTTGGAATTGCACTTCACAGTAATGCGTTTTGCCCTTTTTACTCATCTTTTGTTGTAGAGAGTACTATCATTATTTGTTGTTATATTCTATAAGGCAGTGGATATGGGATATTAAAGTTGTGTAAAATATGCA

mRNA sequence

CGAATTGCTACTCAGAATGGCGAACACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCAATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCCCAGCTGCATCAATTTATATTGCATGCGTCCCTTGACATTGTCCAAGACCTGGCATGGACTACTAGTGCCATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTCTATGTAACCGCTGGTCTACATACGCGATTGATGTTACTTCACGACTCTCGCAATGACGATGGAATCAAGAGTTTTTTTCAAGAGGTTCATGAGCTTTACATAAAGACTATACTCAATCCTCTCTACTTGCCTGGATCCCGCATCACGTCTTCACATTTTGACACAAAAGTTCGCGCACTCGCAAGGAAGTATCTCTAGTCATCACCTTCATTGCAGACCAAATGTGCTTTCATGACAATGCTTCGAAGTTTATAGTAGCCCTAAGTTTTCTTTTAACTGTACAACATTTTAATCTTTGCCATTTGTGGTCCTGACATCAATCAATTCAGTAGTTAAATAATTCTCAATGTGTAATATTGACTTTGGAATGGCTTGGTTACGAGTTGGAATTGCACTTCACAGTAATGCGTTTTGCCCTTTTTACTCATCTTTTGTTGTAGAGAGTACTATCATTATTTGTTGTTATATTCTATAAGGCAGTGGATATGGGATATTAAAGTTGTGTAAAATATGCA

Coding sequence (CDS)

ATGGCGAACACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCAATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCCCAGCTGCATCAATTTATATTGCATGCGTCCCTTGACATTGTCCAAGACCTGGCATGGACTACTAGTGCCATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTCTATGTAACCGCTGGTCTACATACGCGATTGATGTTACTTCACGACTCTCGCAATGACGATGGAATCAAGAGTTTTTTTCAAGAGGTTCATGAGCTTTACATAAAGACTATACTCAATCCTCTCTACTTGCCTGGATCCCGCATCACGTCTTCACATTTTGACACAAAAGTTCGCGCACTCGCAAGGAAGTATCTCTAG

Protein sequence

MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL
Homology
[Close]
BLAST of IVF0009398 vs. ExPASy Swiss-Prot
Match: Q3T0F2 (Trafficking protein particle complex subunit 2 OS=Bos taurus OX=9913 GN=TRAPPC2 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-30
Identity = 65/139 (46.76%), Postives = 95/139 (68.35%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGS 120
           LK VD+FN+  VS +VTAG H R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S
Sbjct: 61  LKTVDKFNEWFVSAFVTAG-HMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNS 120

Query: 121 RITSSHFDTKVRALARKYL 137
            I SS FD KV+ L +K+L
Sbjct: 121 PIRSSAFDRKVQFLGKKHL 138

[Close]
BLAST of IVF0009398 vs. ExPASy Swiss-Prot
Match: E2QV03 (Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris OX=9615 GN=TRAPPC2 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-30
Identity = 65/139 (46.76%), Postives = 95/139 (68.35%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGS 120
           LK VD+FN+  VS +VTAG H R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S
Sbjct: 61  LKTVDKFNEWFVSAFVTAG-HMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAMNPFYEPNS 120

Query: 121 RITSSHFDTKVRALARKYL 137
            I SS FD KV+ L +K+L
Sbjct: 121 PIRSSAFDRKVQFLGKKHL 138

[Close]
BLAST of IVF0009398 vs. ExPASy Swiss-Prot
Match: F1SRI0 (Trafficking protein particle complex subunit 2 OS=Sus scrofa OX=9823 GN=TRAPPC2 PE=2 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 1.6e-30
Identity = 65/139 (46.76%), Postives = 95/139 (68.35%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGS 120
           LK VD+FN+  VS +VTAG H R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S
Sbjct: 61  LKTVDKFNEWFVSAFVTAG-HMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNS 120

Query: 121 RITSSHFDTKVRALARKYL 137
            I SS FD KV+ L +K+L
Sbjct: 121 PIRSSAFDRKVQFLGKKHL 138

[Close]
BLAST of IVF0009398 vs. ExPASy Swiss-Prot
Match: P0DI81 (Trafficking protein particle complex subunit 2 OS=Homo sapiens OX=9606 GN=TRAPPC2 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-30
Identity = 65/139 (46.76%), Postives = 95/139 (68.35%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGS 120
           LK VD+FN+  VS +VTAG H R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S
Sbjct: 61  LKTVDKFNEWFVSAFVTAG-HMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNS 120

Query: 121 RITSSHFDTKVRALARKYL 137
            I SS FD KV+ L +K+L
Sbjct: 121 PIRSSAFDRKVQFLGKKHL 138

[Close]
BLAST of IVF0009398 vs. ExPASy Swiss-Prot
Match: P0DI82 (Trafficking protein particle complex subunit 2B OS=Homo sapiens OX=9606 GN=TRAPPC2B PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-30
Identity = 65/139 (46.76%), Postives = 95/139 (68.35%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGS 120
           LK VD+FN+  VS +VTAG H R ++LHD R +DGIK+FF +V++LYIK  +NP Y P S
Sbjct: 61  LKTVDKFNEWFVSAFVTAG-HMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNS 120

Query: 121 RITSSHFDTKVRALARKYL 137
            I SS FD KV+ L +K+L
Sbjct: 121 PIRSSAFDRKVQFLGKKHL 138

[Close]
BLAST of IVF0009398 vs. ExPASy TrEMBL
Match: A0A1S4E319 (trafficking protein particle complex subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499581 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.3e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120
           VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT
Sbjct: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120

Query: 121 SSHFDTKVRALARKYL 137
           SSHFDTKVRALARKYL
Sbjct: 121 SSHFDTKVRALARKYL 136

[Close]
BLAST of IVF0009398 vs. ExPASy TrEMBL
Match: A0A1S3CCU2 (trafficking protein particle complex subunit 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499581 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.5e-68
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120
           VDRFNDLVVSVYVTAG HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT
Sbjct: 61  VDRFNDLVVSVYVTAG-HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120

Query: 121 SSHFDTKVRALARKYL 137
           SSHFDTKVRALARKYL
Sbjct: 121 SSHFDTKVRALARKYL 135

[Close]
BLAST of IVF0009398 vs. ExPASy TrEMBL
Match: A0A6J1I1U1 (transport protein particle 20 kDa subunit isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469735 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.5e-67
Identity = 133/136 (97.79%), Postives = 133/136 (97.79%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120
           VDRFNDLVVSVYVTAG HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT
Sbjct: 61  VDRFNDLVVSVYVTAG-HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120

Query: 121 SSHFDTKVRALARKYL 137
           SSHFDTKVRALARKYL
Sbjct: 121 SSHFDTKVRALARKYL 135

[Close]
BLAST of IVF0009398 vs. ExPASy TrEMBL
Match: A0A6J1G7X4 (transport protein particle 20 kDa subunit isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451547 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.5e-67
Identity = 133/136 (97.79%), Postives = 133/136 (97.79%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120
           VDRFNDLVVSVYVTAG HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT
Sbjct: 61  VDRFNDLVVSVYVTAG-HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120

Query: 121 SSHFDTKVRALARKYL 137
           SSHFDTKVRALARKYL
Sbjct: 121 SSHFDTKVRALARKYL 135

[Close]
BLAST of IVF0009398 vs. ExPASy TrEMBL
Match: A0A6J1DTW9 (transport protein particle 20 kDa subunit OS=Momordica charantia OX=3673 GN=LOC111024377 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.5e-66
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRN+IPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120
           VDRFNDLVVSVYVTAG HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT
Sbjct: 61  VDRFNDLVVSVYVTAG-HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120

Query: 121 SSHFDTKVRALARKYL 137
           SSHFDTKVRALARKYL
Sbjct: 121 SSHFDTKVRALARKYL 135

[Close]
BLAST of IVF0009398 vs. NCBI nr
Match: XP_016902622.1 (PREDICTED: trafficking protein particle complex subunit 2 isoform X1 [Cucumis melo])

HSP 1 Score: 271 bits (693), Expect = 1.24e-91
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120
           VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT
Sbjct: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120

Query: 121 SSHFDTKVRALARKYL 136
           SSHFDTKVRALARKYL
Sbjct: 121 SSHFDTKVRALARKYL 136

[Close]
BLAST of IVF0009398 vs. NCBI nr
Match: KAG6604699.1 (Trafficking protein particle complex subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 267 bits (683), Expect = 4.16e-90
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRNNIPIYEAEVGSA KREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120
           VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT
Sbjct: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120

Query: 121 SSHFDTKVRALARKYL 136
           SSHFDTKVRALARKYL
Sbjct: 121 SSHFDTKVRALARKYL 136

[Close]
BLAST of IVF0009398 vs. NCBI nr
Match: XP_008460820.1 (PREDICTED: trafficking protein particle complex subunit 2 isoform X2 [Cucumis melo])

HSP 1 Score: 265 bits (677), Expect = 3.31e-89
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120
           VDRFNDLVVSVYVTAG HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT
Sbjct: 61  VDRFNDLVVSVYVTAG-HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120

Query: 121 SSHFDTKVRALARKYL 136
           SSHFDTKVRALARKYL
Sbjct: 121 SSHFDTKVRALARKYL 135

[Close]
BLAST of IVF0009398 vs. NCBI nr
Match: XP_038900562.1 (transport protein particle 20 kDa subunit [Benincasa hispida])

HSP 1 Score: 263 bits (671), Expect = 2.72e-88
Identity = 134/136 (98.53%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120
           VDRFNDLVVSVYVTAG HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT
Sbjct: 61  VDRFNDLVVSVYVTAG-HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120

Query: 121 SSHFDTKVRALARKYL 136
           SSHFDTKVRALARKYL
Sbjct: 121 SSHFDTKVRALARKYL 135

[Close]
BLAST of IVF0009398 vs. NCBI nr
Match: XP_004147330.1 (transport protein particle 20 kDa subunit [Cucumis sativus])

HSP 1 Score: 262 bits (670), Expect = 3.86e-88
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120
           VDRFNDLVVSVYVTAG HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSR+T
Sbjct: 61  VDRFNDLVVSVYVTAG-HTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRVT 120

Query: 121 SSHFDTKVRALARKYL 136
           SSHFDTKVRALARKYL
Sbjct: 121 SSHFDTKVRALARKYL 135

[Close]
BLAST of IVF0009398 vs. TAIR 10
Match: AT1G80500.1 (SNARE-like superfamily protein )

HSP 1 Score: 253.4 bits (646), Expect = 1.0e-67
Identity = 125/136 (91.91%), Postives = 132/136 (97.06%), Query Frame = 0 

Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MANTACFIIV RN+IPIYEAEVGSA KRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+
Sbjct: 1   MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIKTILNPLYLPGSRIT 120
           VDRFNDLVVSVYVTAG HTRLMLLHDSRN+DGIKSFFQEVHELYIK +LNPLYLPGSRIT
Sbjct: 61  VDRFNDLVVSVYVTAG-HTRLMLLHDSRNEDGIKSFFQEVHELYIKILLNPLYLPGSRIT 120

Query: 121 SSHFDTKVRALARKYL 137
           SSHFDTKVRALARKYL
Sbjct: 121 SSHFDTKVRALARKYL 135

The following BLAST results are available for this feature:
BLAST of IVF0009398 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3T0F21.6e-3046.76Trafficking protein particle complex subunit 2 OS=Bos taurus OX=9913 GN=TRAPPC2 ... [more]
E2QV031.6e-3046.76Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris OX=9615... [more]
F1SRI01.6e-3046.76Trafficking protein particle complex subunit 2 OS=Sus scrofa OX=9823 GN=TRAPPC2 ... [more]
P0DI812.1e-3046.76Trafficking protein particle complex subunit 2 OS=Homo sapiens OX=9606 GN=TRAPPC... [more]
P0DI822.1e-3046.76Trafficking protein particle complex subunit 2B OS=Homo sapiens OX=9606 GN=TRAPP... [more]
BLAST of IVF0009398 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4E3198.3e-70100.00trafficking protein particle complex subunit 2 isoform X1 OS=Cucumis melo OX=365... [more]
A0A1S3CCU24.5e-6899.26trafficking protein particle complex subunit 2 isoform X2 OS=Cucumis melo OX=365... [more]
A0A6J1I1U16.5e-6797.79transport protein particle 20 kDa subunit isoform X2 OS=Cucurbita maxima OX=3661... [more]
A0A6J1G7X46.5e-6797.79transport protein particle 20 kDa subunit isoform X2 OS=Cucurbita moschata OX=36... [more]
A0A6J1DTW92.5e-6697.06transport protein particle 20 kDa subunit OS=Momordica charantia OX=3673 GN=LOC1... [more]
BLAST of IVF0009398 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016902622.11.24e-91100.00PREDICTED: trafficking protein particle complex subunit 2 isoform X1 [Cucumis me... [more]
KAG6604699.14.16e-9098.53Trafficking protein particle complex subunit 2, partial [Cucurbita argyrosperma ... [more]
XP_008460820.13.31e-8999.26PREDICTED: trafficking protein particle complex subunit 2 isoform X2 [Cucumis me... [more]
XP_038900562.12.72e-8898.53transport protein particle 20 kDa subunit [Benincasa hispida][more]
XP_004147330.13.86e-8897.79transport protein particle 20 kDa subunit [Cucumis sativus][more]
BLAST of IVF0009398 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G80500.11.0e-6791.91SNARE-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.450.70coord: 1..136
e-value: 1.3E-55
score: 189.4
NoneNo IPR availablePANTHERPTHR12403:SF27SNARE-LIKE SUPERFAMILY PROTEINcoord: 1..136
NoneNo IPR availableCDDcd14825TRAPPC2_sedlincoord: 4..136
e-value: 1.17019E-71
score: 208.923
IPR006722Trafficking protein particle complex subunit 2PFAMPF04628Sedlin_Ncoord: 9..134
e-value: 1.9E-41
score: 141.2
IPR006722Trafficking protein particle complex subunit 2PANTHERPTHR12403TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2coord: 1..136
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 1..136

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009398.4IVF0009398.4mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0030008 TRAPP complex