IVF0009379 (gene) Melon (IVF77) v1

Overview
NameIVF0009379
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description40S ribosomal protein S13
Locationchr08: 10034164 .. 10034319 (-)
RNA-Seq ExpressionIVF0009379
SyntenyIVF0009379
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAAGACTCCAAGTTCAGATTGATTCTTGTTGATTCTTGA

mRNA sequence

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAAGACTCCAAGTTCAGATTGATTCTTGTTGATTCTTGA

Coding sequence (CDS)

ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAGGACAAAGACTCCAAGTTCAGATTGATTCTTGTTGATTCTTGA

Protein sequence

MCVFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Homology
[Close]
BLAST of IVF0009379 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-16
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

[Close]
BLAST of IVF0009379 vs. ExPASy Swiss-Prot
Match: P62299 (40S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-16
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 3   VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           V +L +KG+APEIPEDLYHLIKKAV+IRKHLERNRKDKDSK+RLILV+S
Sbjct: 72  VRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVES 120

[Close]
BLAST of IVF0009379 vs. ExPASy Swiss-Prot
Match: P62300 (40S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-16
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 3   VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           V +L +KG+APEIPEDLYHLIKKAV+IRKHLERNRKDKDSK+RLILV+S
Sbjct: 72  VRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVES 120

[Close]
BLAST of IVF0009379 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-16
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]
BLAST of IVF0009379 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-16
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]
BLAST of IVF0009379 vs. ExPASy TrEMBL
Match: A8UAD8 (40S ribosomal protein S13 OS=Barentsia elongata OX=478378 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 43/47 (91.49%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +L +KGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

[Close]
BLAST of IVF0009379 vs. ExPASy TrEMBL
Match: A0A5A7TK12 (40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00500 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 1   MCVFLLL--SKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +C+ ++L  S GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 62  VCIGVILRDSHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 114

[Close]
BLAST of IVF0009379 vs. ExPASy TrEMBL
Match: A0A5A7U9F0 (Putative ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001980 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0 

Query: 1  MCVFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLI 48
          MCVFLLLSKGLAPEIPEDLYHLIKK VSIRKHLERNRKDKDSK + +
Sbjct: 1  MCVFLLLSKGLAPEIPEDLYHLIKKVVSIRKHLERNRKDKDSKAKFV 47

[Close]
BLAST of IVF0009379 vs. ExPASy TrEMBL
Match: A0A0N4V0I2 (40S ribosomal protein S13 OS=Enterobius vermicularis OX=51028 GN=EVEC_LOCUS3134 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.4e-14
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 3   VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           V +L SKG+APEIPEDLYHLIKKAVSIRKHLERNRKDKDSK+RLILV+S
Sbjct: 72  VRILKSKGMAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKYRLILVES 120

[Close]
BLAST of IVF0009379 vs. ExPASy TrEMBL
Match: A0A0N5AK96 (40S ribosomal protein S13 OS=Syphacia muris OX=451379 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.4e-14
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 0 

Query: 3   VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           V +L SKG+APEIPEDLYHLIKKAVSIRKHLERNRKDKDSK+RLILV+S
Sbjct: 72  VRILKSKGMAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKYRLILVES 120

[Close]
BLAST of IVF0009379 vs. NCBI nr
Match: KAA0043612.1 (40S ribosomal protein S13 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 3.66e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0 

Query: 1   MCVFLLL--SKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 51
           +C+ ++L  S GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 62  VCIGVILRDSHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 114

[Close]
BLAST of IVF0009379 vs. NCBI nr
Match: KAA0049888.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 4.64e-20
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0 

Query: 5  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 51
          +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]
BLAST of IVF0009379 vs. NCBI nr
Match: TYK07625.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK14810.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK15131.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK22659.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 4.64e-20
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0 

Query: 5  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 51
          +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]
BLAST of IVF0009379 vs. NCBI nr
Match: KAA0046917.1 (40S ribosomal protein S13-like [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 4.64e-20
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0 

Query: 5  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 51
          +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS
Sbjct: 38 ILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 84

[Close]
BLAST of IVF0009379 vs. NCBI nr
Match: ONK55068.1 (uncharacterized protein A4U43_UnF7960 [Asparagus officinalis])

HSP 1 Score: 84.3 bits (207), Expect = 8.88e-20
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 0 

Query: 1  MCVFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 51
          MC+ +    GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Sbjct: 1  MCITVKCYLGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 51

[Close]
BLAST of IVF0009379 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-17
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

[Close]
BLAST of IVF0009379 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-17
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 0 

Query: 5   LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVDS 52
           +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILV+S
Sbjct: 74  ILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

The following BLAST results are available for this feature:
BLAST of IVF0009379 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P623021.9e-1689.3640S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1[more]
P622993.2e-1683.6740S ribosomal protein S13 OS=Brugia pahangi OX=6280 GN=RPS13 PE=2 SV=2[more]
P623003.2e-1683.6740S ribosomal protein S13 OS=Wuchereria bancrofti OX=6293 GN=RPS13 PE=3 SV=2[more]
P592234.2e-1687.2340S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1[more]
P592244.2e-1687.2340S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1[more]
BLAST of IVF0009379 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A8UAD81.4e-1491.4940S ribosomal protein S13 OS=Barentsia elongata OX=478378 PE=2 SV=1[more]
A0A5A7TK121.4e-1484.9140S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo... [more]
A0A5A7U9F01.8e-1489.36Putative ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A0N4V0I22.4e-1487.7640S ribosomal protein S13 OS=Enterobius vermicularis OX=51028 GN=EVEC_LOCUS3134 ... [more]
A0A0N5AK962.4e-1487.7640S ribosomal protein S13 OS=Syphacia muris OX=451379 PE=3 SV=1[more]
BLAST of IVF0009379 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0043612.13.66e-2084.9140S ribosomal protein S13 [Cucumis melo var. makuwa][more]
KAA0049888.14.64e-2091.4940S ribosomal protein S13-like [Cucumis melo var. makuwa][more]
TYK07625.14.64e-2091.4940S ribosomal protein S13-like [Cucumis melo var. makuwa] >TYK14810.1 40S riboso... [more]
KAA0046917.14.64e-2091.4940S ribosomal protein S13-like [Cucumis melo var. makuwa][more]
ONK55068.18.88e-2082.35uncharacterized protein A4U43_UnF7960 [Asparagus officinalis][more]
BLAST of IVF0009379 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G60770.13.0e-1787.23Ribosomal protein S13/S15 [more]
AT4G00100.13.0e-1787.23ribosomal protein S13A [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.10coord: 13..51
e-value: 3.8E-21
score: 77.1
NoneNo IPR availablePANTHERPTHR11885:SF2240S RIBOSOMAL PROTEIN S13coord: 5..51
IPR000589Ribosomal protein S15PFAMPF00312Ribosomal_S15coord: 14..49
e-value: 1.4E-7
score: 31.6
IPR023029Ribosomal protein S15PPANTHERPTHR11885RIBOSOMAL PROTEIN S15P/S13Ecoord: 5..51
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 8..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0009379.2IVF0009379.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005829 cytosol
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome