IVF0009088 (gene) Melon (IVF77) v1

Overview


Name	IVF0009088
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Senescence-specific cysteine protease sag39
Location	chr11: 21907755 .. 21907994 (+)
RNA-Seq Expression	IVF0009088
Synteny	IVF0009088

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACATGCGGCCAAACGGAGCTCACGCATACTTAGCACCTACCATGGTAACAACATACCGCTCCTATGTGCACATAGAGCCACCCAACCATGGGTTAAGCTAGGACCGAAGCCATATCACAATTCTCCATCCGCGTCCTCACCTAAGCTCAGGTTCTCGGATCTCCGGTCACGGCCTCTTTCAGCCACGGAATCCCCTGACAACCGTAGGTGGCGCTACAGAAACACATTCTTGTAG

mRNA sequence

ATGAAACATGCGGCCAAACGGAGCTCACGCATACTTAGCACCTACCATGGTAACAACATACCGCTCCTATGTGCACATAGAGCCACCCAACCATGGGTTAAGCTAGGACCGAAGCCATATCACAATTCTCCATCCGCGTCCTCACCTAAGCTCAGGTTCTCGGATCTCCGGTCACGGCCTCTTTCAGCCACGGAATCCCCTGACAACCGTAGGTGGCGCTACAGAAACACATTCTTGTAG

Coding sequence (CDS)

ATGAAACATGCGGCCAAACGGAGCTCACGCATACTTAGCACCTACCATGGTAACAACATACCGCTCCTATGTGCACATAGAGCCACCCAACCATGGGTTAAGCTAGGACCGAAGCCATATCACAATTCTCCATCCGCGTCCTCACCTAAGCTCAGGTTCTCGGATCTCCGGTCACGGCCTCTTTCAGCCACGGAATCCCCTGACAACCGTAGGTGGCGCTACAGAAACACATTCTTGTAG

Protein sequence

MKHAAKRSSRILSTYHGNNIPLLCAHRATQPWVKLGPKPYHNSPSASSPKLRFSDLRSRPLSATESPDNRRWRYRNTFL

Homology

[Close]

BLAST of IVF0009088 vs. ExPASy TrEMBL
Match: A0A5A7V094 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00240 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 2   KHAAKRSSRILSTYHGNNIPLLCAHRATQPWVKLGPKPYHNSPSASSPKLRFSDLRSRPL 61
           KHAAKRSS IL+TYHGNNIPLLCAHRATQPW+KLGPKPYHN  S SSP+L+FSDLRSRPL
Sbjct: 48  KHAAKRSSCILNTYHGNNIPLLCAHRATQPWIKLGPKPYHNPISTSSPRLKFSDLRSRPL 107

Query: 62  SATESPDNR 71
           SATESPDNR
Sbjct: 108 SATESPDNR 116

[Close]

BLAST of IVF0009088 vs. ExPASy TrEMBL
Match: A0A5D3CAY3 (Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00450 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.3e-26
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 2  KHAAKRSSRILSTYHGNNIPLLCAHRATQPWVKLGPKPYHNSPSASSPKLRFSDLRSRPL 61
          K AAK SSRILSTYHG+NIPLLCAHRATQPWVKLGPKPY+N PS SSP+LRFSDLRS P 
Sbjct: 7  KDAAKWSSRILSTYHGSNIPLLCAHRATQPWVKLGPKPYYNPPSTSSPRLRFSDLRSWPF 66

Query: 62 SATESPDNRR 72
          SATESPDNRR
Sbjct: 67 SATESPDNRR 76

[Close]

BLAST of IVF0009088 vs. NCBI nr
Match: TYK09013.1 (senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (319), Expect = 2.60e-34
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 2  KHAAKRSSRILSTYHGNNIPLLCAHRATQPWVKLGPKPYHNSPSASSPKLRFSDLRSRPL 61
          K AAK SSRILSTYHG+NIPLLCAHRATQPWVKLGPKPY+N PS SSP+LRFSDLRS P 
Sbjct: 7  KDAAKWSSRILSTYHGSNIPLLCAHRATQPWVKLGPKPYYNPPSTSSPRLRFSDLRSWPF 66

Query: 62 SATESPDNRR 71
          SATESPDNRR
Sbjct: 67 SATESPDNRR 76

[Close]

BLAST of IVF0009088 vs. NCBI nr
Match: KAA0060734.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (330), Expect = 2.16e-33
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 2   KHAAKRSSRILSTYHGNNIPLLCAHRATQPWVKLGPKPYHNSPSASSPKLRFSDLRSRPL 61
           KHAAKRSS IL+TYHGNNIPLLCAHRATQPW+KLGPKPYHN  S SSP+L+FSDLRSRPL
Sbjct: 48  KHAAKRSSCILNTYHGNNIPLLCAHRATQPWIKLGPKPYHNPISTSSPRLKFSDLRSRPL 107

Query: 62  SATESPDNR 70
           SATESPDNR
Sbjct: 108 SATESPDNR 116

The following BLAST results are available for this feature:

BLAST of IVF0009088 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0009088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V094	1.7e-27	88.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]
A0A5D3CAY3	3.3e-26	87.14	Senescence-specific cysteine protease sag39 OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of IVF0009088 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09013.1	2.60e-34	87.14	senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa]	[more]
KAA0060734.1	2.16e-33	88.41	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0009088 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0009088.1	IVF0009088.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0008270	zinc ion binding