Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTTGAAGAGTTGGAGAAGAGAATGGAAGAATTGAAAGCTATGAGCGAGAAGCAAGAAGCGACAACAAACTACTACGACACCAAGTTACATACTATCATTGTCGCTTATTTCATTTGGGAACGCGCTTTCTTTTTTGGCATTTCCAACAAAACTAATTCTCCTAATTATTTCTCCTCCCTCATCTGCCATACCAACTGGCAGCTGATTCTTGCTCTAAGCTGTTTATACAGCCTTGTTTACATGCTGCTTTATCTCGATGCTGCGTTGATGCTCTACCGATCGGAACTAAAACAAAATTTGATTCTCAAGAAACATGCTCAACTTTATCAGCAAATTTCGAGAATCAAACAAGAATTAATCAACTCCATTGGTTCTTCATCCATGGAGGACGAAGAGGATGTAACACTCGTAATAGACTCAAGCTCAACCTTTAGGAGGAGGGAAGAGAGAATATTTTATATGTCCACCATTTTCTGTGCTTTGGTTTGTGTTGCTTCTCTAGAATTATATGCTTGCAAAACTATTCTTTGTTCATAA
mRNA sequence
ATGGAATTTGAAGAGTTGGAGAAGAGAATGGAAGAATTGAAAGCTATGAGCGAGAAGCAAGAAGCGACAACAAACTACTACGACACCAAGTTACATACTATCATTGTCGCTTATTTCATTTGGGAACGCGCTTTCTTTTTTGGCATTTCCAACAAAACTAATTCTCCTAATTATTTCTCCTCCCTCATCTGCCATACCAACTGGCAGCTGATTCTTGCTCTAAGCTGTTTATACAGCCTTGTTTACATGCTGCTTTATCTCGATGCTGCGTTGATGCTCTACCGATCGGAACTAAAACAAAATTTGATTCTCAAGAAACATGCTCAACTTTATCAGCAAATTTCGAGAATCAAACAAGAATTAATCAACTCCATTGGTTCTTCATCCATGGAGGACGAAGAGGATGTAACACTCGTAATAGACTCAAGCTCAACCTTTAGGAGGAGGGAAGAGAGAATATTTTATATGTCCACCATTTTCTGTGCTTTGGTTTGTGTTGCTTCTCTAGAATTATATGCTTGCAAAACTATTCTTTGTTCATAA
Coding sequence (CDS)
ATGGAATTTGAAGAGTTGGAGAAGAGAATGGAAGAATTGAAAGCTATGAGCGAGAAGCAAGAAGCGACAACAAACTACTACGACACCAAGTTACATACTATCATTGTCGCTTATTTCATTTGGGAACGCGCTTTCTTTTTTGGCATTTCCAACAAAACTAATTCTCCTAATTATTTCTCCTCCCTCATCTGCCATACCAACTGGCAGCTGATTCTTGCTCTAAGCTGTTTATACAGCCTTGTTTACATGCTGCTTTATCTCGATGCTGCGTTGATGCTCTACCGATCGGAACTAAAACAAAATTTGATTCTCAAGAAACATGCTCAACTTTATCAGCAAATTTCGAGAATCAAACAAGAATTAATCAACTCCATTGGTTCTTCATCCATGGAGGACGAAGAGGATGTAACACTCGTAATAGACTCAAGCTCAACCTTTAGGAGGAGGGAAGAGAGAATATTTTATATGTCCACCATTTTCTGTGCTTTGGTTTGTGTTGCTTCTCTAGAATTATATGCTTGCAAAACTATTCTTTGTTCATAA
Protein sequence
MEFEELEKRMEELKAMSEKQEATTNYYDTKLHTIIVAYFIWERAFFFGISNKTNSPNYFSSLICHTNWQLILALSCLYSLVYMLLYLDAALMLYRSELKQNLILKKHAQLYQQISRIKQELINSIGSSSMEDEEDVTLVIDSSSTFRRREERIFYMSTIFCALVCVASLELYACKTILCS
Homology
BLAST of IVF0008688 vs. ExPASy TrEMBL
Match:
A0A0A0L822 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G484330 PE=4 SV=1)
HSP 1 Score: 289.7 bits (740), Expect = 8.6e-75
Identity = 158/180 (87.78%), Postives = 165/180 (91.67%), Query Frame = 0
Query: 1 MEFEELEKRMEELKAMSEKQEATTNYYDTKLHTIIVAYFIWERAFFFGISNKTNSPNYFS 60
ME EELEKRMEELKAMSEKQEAT NYYDTKLHTII AYFIWERAF F ISNKTNSPNYFS
Sbjct: 1 MELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFS 60
Query: 61 SLICHTNWQLILALSCLYSLVYMLLYLDAALMLYRSELKQNLILKKHAQLYQQISRIKQE 120
SLICH NW+LILALS LYSLVY+LLYLDAALMLYRSELKQNLIL KHAQLY QIS+IKQE
Sbjct: 61 SLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQE 120
Query: 121 LINSIGSSSMEDEEDVTLVIDSSSTFRRREERIFYMSTIFCALVCVASLELYACKTILCS 180
NSI SSSME EED+ L+I+SSSTFRR EERIFYMSTIFCALVCVASLELYACK+ILCS
Sbjct: 121 -FNSIDSSSMEAEEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELYACKSILCS 179
BLAST of IVF0008688 vs. ExPASy TrEMBL
Match:
A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)
HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 72/187 (38.50%), Postives = 109/187 (58.29%), Query Frame = 0
Query: 1 MEFEELEKRMEELKAMSEKQEATTNYYDTKLHTIIVAYFIWERAFFFGISNKTNSPNYFS 60
M ELE++ EELK ++EKQE+ YY+TK+ I+ Y I+ R FFFGIS ++S N
Sbjct: 1 MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFN--- 60
Query: 61 SLICHTNWQLILALSCLYSLVYMLLYLDAALMLYRSELKQNLILKKHAQLYQQISRIKQE 120
C +W +ILALS L S +Y LL+LDA ML+R++ + ++I K+ +L+QQI K +
Sbjct: 61 ---C-KDWWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQ 120
Query: 121 ----LINSIGSSSMEDE---EDVTLVIDSSSTFRRREERIFYMSTIFCALVCVASLELYA 180
L G SS E + L++D FR +++ T+ AL+ V ++ELY
Sbjct: 121 DDVGLSMETGESSGGFEFGFHEKMLMLDH---FRIVGRKVYIYFTV-SALLAVTAIELYV 176
BLAST of IVF0008688 vs. ExPASy TrEMBL
Match:
A0A0A0KUT0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G562290 PE=4 SV=1)
HSP 1 Score: 91.7 bits (226), Expect = 3.5e-15
Identity = 65/178 (36.52%), Postives = 108/178 (60.67%), Query Frame = 0
Query: 4 EELEKRMEELKAMSEKQEATTNYYDTKLHTIIVAYFIWERAFFFGISNKTNSPNYFSSLI 63
EE++K +EEL AM++ Q+ Y+T L I +A+ +W R FFF +S SPN SSL+
Sbjct: 7 EEMQKVLEELNAMADTQKGRVENYETSLQNIAIAFLVWLRLFFFSLSQ--TSPN--SSLL 66
Query: 64 CHTNWQLILALSCLYSLVYMLLYLDAALMLYRSELKQNLILKKHAQLYQQISRIK-QELI 123
+W L+ AL+C + +Y+LL++ +LML R+E + ++I ++ QL+QQI ++ QEL
Sbjct: 67 HCKHWWLLFALTCFSAFLYILLFIHNSLMLSRTERQLHVISRQQIQLHQQIWMLRLQELP 126
Query: 124 NSIGSSSMEDEEDVTLVIDSSSTFRRREERIFYMSTIFCALVCVASLELYACKTILCS 181
I M + + + +STF ER Y++ I C + + +LELYA +++LC+
Sbjct: 127 QMIEPIIM--DHIINGEMGRTSTF----ERKLYINCILCGFIGIVALELYASRSLLCN 174
BLAST of IVF0008688 vs. ExPASy TrEMBL
Match:
A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 3.8e-14
Identity = 66/192 (34.38%), Postives = 100/192 (52.08%), Query Frame = 0
Query: 1 MEFEELEKRMEELKAMSEKQEATTNYYDTKLHTIIVAYFIWERAFFFGISNKTNSPNYFS 60
MEF EL++ E LK + EKQE+ Y++++ I +AY IW R FFF IS + S
Sbjct: 1 MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTS------S 60
Query: 61 SLICHTNWQLILALSCLYSLVYMLLYLDAALMLYRSELKQNLILKKHAQLYQQISRIKQE 120
SL+ +W ++L LS + VY L +L+A MLYR + + ++I K+ A++ QQI
Sbjct: 61 SLLKCIDWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQI------ 120
Query: 121 LINSIGSSSMEDEEDVTLVIDSSSTFR-------------RREERIFYMSTIFCALVCVA 180
+ S ++D + DSS F+ R ER FY+ AL+ V
Sbjct: 121 ---LVARSQLDDVDLAMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVT 177
BLAST of IVF0008688 vs. ExPASy TrEMBL
Match:
A0A6J1DX22 (uncharacterized protein LOC111023930 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023930 PE=4 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 2.1e-12
Identity = 47/114 (41.23%), Postives = 70/114 (61.40%), Query Frame = 0
Query: 1 MEFEELEKRMEELKAMSEKQEATTNYYDTKLHTIIVAYFIWERAFFFGISNKTNSPNYFS 60
MEF L K +ELK ++EKQE Y++++ H I +AY IWER FFFG+S ++S +
Sbjct: 1 MEFGVLRKNFDELKDLAEKQETRLRYHESRAHNIAMAYLIWERFFFFGVSQASSSSSSSL 60
Query: 61 SLICHTNWQLILALSCLYSLVYMLLYLDAALMLYRSELKQNLILKKHAQLYQQI 115
L C +NW ++L LS S +Y L +L+ MLY + +++ KK QL +QI
Sbjct: 61 LLKC-SNWSMVLGLSLSCSFLYFLFFLETLTMLYLAHYHFDIVCKKQIQLCRQI 113
BLAST of IVF0008688 vs. NCBI nr
Match:
KAE8650729.1 (hypothetical protein Csa_023412 [Cucumis sativus])
HSP 1 Score: 289 bits (739), Expect = 3.58e-97
Identity = 158/180 (87.78%), Postives = 165/180 (91.67%), Query Frame = 0
Query: 1 MEFEELEKRMEELKAMSEKQEATTNYYDTKLHTIIVAYFIWERAFFFGISNKTNSPNYFS 60
ME EELEKRMEELKAMSEKQEAT NYYDTKLHTII AYFIWERAF F ISNKTNSPNYFS
Sbjct: 5 MELEELEKRMEELKAMSEKQEATANYYDTKLHTIIAAYFIWERAFCFAISNKTNSPNYFS 64
Query: 61 SLICHTNWQLILALSCLYSLVYMLLYLDAALMLYRSELKQNLILKKHAQLYQQISRIKQE 120
SLICH NW+LILALS LYSLVY+LLYLDAALMLYRSELKQNLIL KHAQLY QIS+IKQE
Sbjct: 65 SLICHANWRLILALSSLYSLVYILLYLDAALMLYRSELKQNLILNKHAQLYHQISKIKQE 124
Query: 121 LINSIGSSSMEDEEDVTLVIDSSSTFRRREERIFYMSTIFCALVCVASLELYACKTILCS 180
NSI SSSME EED+ L+I+SSSTFRR EERIFYMSTIFCALVCVASLELYACK+ILCS
Sbjct: 125 F-NSIDSSSMEAEEDLILLINSSSTFRRSEERIFYMSTIFCALVCVASLELYACKSILCS 183
BLAST of IVF0008688 vs. NCBI nr
Match:
KAG6579352.1 (hypothetical protein SDJN03_23800, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 172 bits (436), Expect = 5.14e-51
Identity = 107/192 (55.73%), Postives = 135/192 (70.31%), Query Frame = 0
Query: 1 MEFEELEKRMEELKAMSEKQEATTNYYDTKLHTIIVAYFIWERAFFFGISNKTNSPNYFS 60
ME EEL+K MEE++ M EK EA NYYDTKLHTIIVAYF+WER FFFGIS KT P+ S
Sbjct: 1 MEVEELKKMMEEVQGMGEKVEAKVNYYDTKLHTIIVAYFVWERVFFFGISKKT-FPSTIS 60
Query: 61 SLICHTNWQLILALSCLYSLVYMLLYLDAALMLYRSELKQNLILKKHAQLYQQISRIKQE 120
+L C+ NW +ILALSC S VY+LL+ DAALMLYR E + +LIL+KHAQL + + IK+E
Sbjct: 61 TLSCNGNWWVILALSCSCSFVYVLLFFDAALMLYRHENQLHLILQKHAQLCRHLLAIKEE 120
Query: 121 LINSIGSS-----------SMEDEEDVTLVIDSSSTFRRRE--ERIFYMSTIFCALVCVA 179
++ S S+E+E ++I+S+S FRRR ER ++ TIFCA + VA
Sbjct: 121 QADTKASLMEAGDQASHGLSLEEE---LMLINSTSPFRRRRPWERKVHVYTIFCAFIGVA 180
BLAST of IVF0008688 vs. NCBI nr
Match:
KAG6579345.1 (hypothetical protein SDJN03_23793, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 165 bits (418), Expect = 3.10e-48
Identity = 106/187 (56.68%), Postives = 131/187 (70.05%), Query Frame = 0
Query: 4 EELEKRMEELKAMSEKQEATTNYYDTKLHTIIVAYFIWERAFFFGISNKTNSPNYFSSLI 63
EEL+K MEE++ M E EA NYYDTKLH IIVAYF+WER FFFGIS KT P S+L
Sbjct: 8 EELKKMMEEVQGMGENVEAKVNYYDTKLHNIIVAYFVWERVFFFGISKKTFPPT-ISTLS 67
Query: 64 CHTNWQLILALSCLYSLVYMLLYLDAALMLYRSELKQNLILKKHAQLYQQISRIKQELIN 123
C+ NW +ILALS S VY+LL+ D ALMLYR E + +LIL+KHAQL + + IK+E +
Sbjct: 68 CNGNWWVILALSSSCSFVYVLLFFDTALMLYRHENQLHLILQKHAQLCRHLLAIKEEQAD 127
Query: 124 SIGSSSME--DE-------EDVTLVIDSSSTFRRRE--ERIFYMSTIFCALVCVASLELY 179
I +S ME DE E+ ++I+S+S FRRR ER Y+ TIFCAL+ VASLELY
Sbjct: 128 -IKASLMEAGDEASHGLSLEEELMLINSTSPFRRRRPWERKVYVYTIFCALIGVASLELY 187
BLAST of IVF0008688 vs. NCBI nr
Match:
KAG6579344.1 (hypothetical protein SDJN03_23792, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 161 bits (408), Expect = 8.42e-47
Identity = 104/189 (55.03%), Postives = 134/189 (70.90%), Query Frame = 0
Query: 1 MEFEE-LEKRMEELKAMSEKQEATTNYYDTKLHTIIVAYFIWERAFFF-----GISNKTN 60
ME EE +EKRMEE+K M EK E NYYDTKLH IIVAY +WER FFF G+SN TN
Sbjct: 1 MEIEEQMEKRMEEVKGMWEKVEGRVNYYDTKLHAIIVAYLVWERVFFFFFFFFGVSN-TN 60
Query: 61 SPNYFSSLICHTNWQLILALSCLYSLVYMLLYLDAALMLYRSELKQNLILKKHAQLYQQI 120
+ S+L C+ W +I+ALSCL S VYMLL++DAALMLY + + NLIL+ H QLY+Q+
Sbjct: 61 FASNISTLSCNGKWWVIVALSCLCSFVYMLLFVDAALMLYPHQNQLNLILQTHHQLYRQL 120
Query: 121 SRIKQELINSIGSSS--MEDEEDVTLVIDSSSTFRRRE-ERIFYMSTIFCALVCVASLEL 180
IK L+ + +S + EE++ L I+S++ +RRR R FY+ TIFCAL+ VASLEL
Sbjct: 121 LAIKDSLMEAGDEASHGLSLEEELML-INSNAAYRRRPWGRKFYVYTIFCALIDVASLEL 180
BLAST of IVF0008688 vs. NCBI nr
Match:
KGN51471.1 (hypothetical protein Csa_009166 [Cucumis sativus])
HSP 1 Score: 92.8 bits (229), Expect = 5.05e-20
Identity = 64/179 (35.75%), Postives = 108/179 (60.34%), Query Frame = 0
Query: 3 FEELEKRMEELKAMSEKQEATTNYYDTKLHTIIVAYFIWERAFFFGISNKTNSPNYFSSL 62
EE++K +EEL AM++ Q+ Y+T L I +A+ +W R FFF +S SPN SSL
Sbjct: 6 IEEMQKVLEELNAMADTQKGRVENYETSLQNIAIAFLVWLRLFFFSLSQT--SPN--SSL 65
Query: 63 ICHTNWQLILALSCLYSLVYMLLYLDAALMLYRSELKQNLILKKHAQLYQQISRIK-QEL 122
+ +W L+ AL+C + +Y+LL++ +LML R+E + ++I ++ QL+QQI ++ QEL
Sbjct: 66 LHCKHWWLLFALTCFSAFLYILLFIHNSLMLSRTERQLHVISRQQIQLHQQIWMLRLQEL 125
Query: 123 INSIGSSSMEDEEDVTLVIDSSSTFRRREERIFYMSTIFCALVCVASLELYACKTILCS 180
I M+ + + +STF R+ Y++ I C + + +LELYA +++LC+
Sbjct: 126 PQMIEPIIMD--HIINGEMGRTSTFERK----LYINCILCGFIGIVALELYASRSLLCN 174
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L822 | 8.6e-75 | 87.78 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G484330 PE=4 SV=1 | [more] |
A0A6J1DSQ0 | 2.0e-15 | 38.50 | uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A0A0KUT0 | 3.5e-15 | 36.52 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G562290 PE=4 SV=1 | [more] |
A0A6J1DS87 | 3.8e-14 | 34.38 | uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A6J1DX22 | 2.1e-12 | 41.23 | uncharacterized protein LOC111023930 isoform X1 OS=Momordica charantia OX=3673 G... | [more] |
Match Name | E-value | Identity | Description | |
KAE8650729.1 | 3.58e-97 | 87.78 | hypothetical protein Csa_023412 [Cucumis sativus] | [more] |
KAG6579352.1 | 5.14e-51 | 55.73 | hypothetical protein SDJN03_23800, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6579345.1 | 3.10e-48 | 56.68 | hypothetical protein SDJN03_23793, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6579344.1 | 8.42e-47 | 55.03 | hypothetical protein SDJN03_23792, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KGN51471.1 | 5.05e-20 | 35.75 | hypothetical protein Csa_009166 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |