IVF0008614 (gene) Melon (IVF77) v1

Overview


Name	IVF0008614
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag protease polyprotein
Location	chr10: 19292747 .. 19293040 (+)
RNA-Seq Expression	IVF0008614
Synteny	IVF0008614

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCATCATCTCTATCTTCAATACGAGCACAACAGAAACGATAACCATCTTCATCTTAAATGTGGTCATCATCCTTATCTTCAATGTGACACAGTAGAAATGATCATCATCTTCATCTTTAATACGACGAAACAAAGGCGGTCATCATCTTCATCTTCAATGCGGCGCAGTCTAGGCGATCATCATCTTCAATGTGGCACAGACGATCATTCTCTTCAATGCGGCACACACGATAATGAACAAACTCCAAACGTTGATGAAGCAGCAGGGCGTCATGATAGAGTTGCATAG

mRNA sequence

ATGGACCATCATCTCTATCTTCAATACGAGCACAACAGAAACGATAACCATCTTCATCTTAAATGTGGTCATCATCCTTATCTTCAATGTGACACAGTAGAAATGATCATCATCTTCATCTTTAATACGACGAAACAAAGGCGGTCATCATCTTCATCTTCAATGCGGCGCAGTCTAGGCGATCATCATCTTCAATGTGGCACAGACGATCATTCTCTTCAATGCGGCACACACGATAATGAACAAACTCCAAACGTTGATGAAGCAGCAGGGCGTCATGATAGAGTTGCATAG

Coding sequence (CDS)

ATGGACCATCATCTCTATCTTCAATACGAGCACAACAGAAACGATAACCATCTTCATCTTAAATGTGGTCATCATCCTTATCTTCAATGTGACACAGTAGAAATGATCATCATCTTCATCTTTAATACGACGAAACAAAGGCGGTCATCATCTTCATCTTCAATGCGGCGCAGTCTAGGCGATCATCATCTTCAATGTGGCACAGACGATCATTCTCTTCAATGCGGCACACACGATAATGAACAAACTCCAAACGTTGATGAAGCAGCAGGGCGTCATGATAGAGTTGCATAG

Protein sequence

MDHHLYLQYEHNRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSSSMRRSLGDHHLQCGTDDHSLQCGTHDNEQTPNVDEAAGRHDRVA

Homology

[Close]

BLAST of IVF0008614 vs. ExPASy TrEMBL
Match: A0A5A7UC34 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001950 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.9e-26
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 13  RNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSSSMRRSLGDHHLQCGTDDHS 72
           RNDNHLHLKCGHHPYLQCDTVEMIIIFIFN TKQRR SSSSSM RS  DHHLQCG DDHS
Sbjct: 273 RNDNHLHLKCGHHPYLQCDTVEMIIIFIFNMTKQRRLSSSSSMWRSPSDHHLQCGIDDHS 332

Query: 73  LQCGTHDNEQT 84
           LQ GTH N+QT
Sbjct: 333 LQWGTH-NDQT 342

[Close]

BLAST of IVF0008614 vs. ExPASy TrEMBL
Match: A0A5A7UDW0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2042G00100 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.9e-17
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   MDHHLYLQYEHNRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSS 54
           MDHH+YLQY HN+NDNHLHLKCG H +LQC+TVEMIIIFIFNT +QRRSSSSS
Sbjct: 197 MDHHIYLQYGHNKNDNHLHLKCGRHLHLQCNTVEMIIIFIFNTAQQRRSSSSS 249

[Close]

BLAST of IVF0008614 vs. ExPASy TrEMBL
Match: A0A5A7U1J1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001320 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-06
Identity = 40/68 (58.82%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 2   DHHLYLQYEHNRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSSSMRRSLGD 61
           DHHL LQ   N  D HLHL+      LQ DT E II+FIFN  +Q+RSSSSSSM RS  D
Sbjct: 211 DHHLRLQCCRNGED-HLHLR------LQHDTTERIILFIFNVAQQKRSSSSSSMWRSRND 270

Query: 62  H--HLQCG 68
              HLQCG
Sbjct: 271 RHLHLQCG 271

[Close]

BLAST of IVF0008614 vs. ExPASy TrEMBL
Match: A0A5A7V172 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold640G00360 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.0e-06
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 12  NRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRS 50
           +R+D+HLHLK G H +LQC+TVEMIIIFIFNT +QR+S
Sbjct: 938 SRDDHHLHLKYGRHLHLQCNTVEMIIIFIFNTVQQRQS 975

[Close]

BLAST of IVF0008614 vs. ExPASy TrEMBL
Match: A0A5D3BML3 (Hemolysin expression modulating protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00080 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 12  NRNDNHLHLKCGHHPYLQCDTVEMIIIFIFN-------TTKQRRSSSSSSMRRSLGDHHL 71
           +R D+HLHL       L    +E III+IF+       +  Q+R  SSSSM+  +GDHHL
Sbjct: 101 SREDHHLHL-------LTFVVIERIIIYIFSHVCRWSLSQMQQRRRSSSSMQHGVGDHHL 160

Query: 72  QCGTDDHSLQCGTHDN 81
           +CGT +H L+CG +D+
Sbjct: 161 KCGTGNHHLECGAYDH 169

[Close]

BLAST of IVF0008614 vs. NCBI nr
Match: KAA0051997.1 (hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa] >TYK04562.1 hypothetical protein E5676_scaffold409G001950 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 1.53e-32
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 13  RNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSSSMRRSLGDHHLQCGTDDHS 72
           RNDNHLHLKCGHHPYLQCDTVEMIIIFIFN TKQRR SSSSSM RS  DHHLQCG DDHS
Sbjct: 273 RNDNHLHLKCGHHPYLQCDTVEMIIIFIFNMTKQRRLSSSSSMWRSPSDHHLQCGIDDHS 332

Query: 73  LQCGTHDNEQT 83
           LQ GTH N+QT
Sbjct: 333 LQWGTH-NDQT 342

[Close]

BLAST of IVF0008614 vs. NCBI nr
Match: KAA0051895.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ99890.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.04e-21
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   MDHHLYLQYEHNRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSS 53
           MDHH+YLQY HN+NDNHLHLKCG H +LQC+TVEMIIIFIFNT +QRRSSSSS
Sbjct: 197 MDHHIYLQYGHNKNDNHLHLKCGRHLHLQCNTVEMIIIFIFNTAQQRRSSSSS 249

[Close]

BLAST of IVF0008614 vs. NCBI nr
Match: KAA0047505.1 (hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 2.03e-08
Identity = 41/75 (54.67%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 2   DHHLYLQYEHNRNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRSSSSSSMRRSLGD 61
           DHHL LQ   N  D HLHL+      LQ DT E II+FIFN  +Q+RSSSSSSM RS  D
Sbjct: 211 DHHLRLQCCRNGED-HLHLR------LQHDTTERIILFIFNVAQQKRSSSSSSMWRSRND 270

Query: 62  HHLQCGTDDHSLQCG 76
            HL        LQCG
Sbjct: 271 RHLH-------LQCG 271

[Close]

BLAST of IVF0008614 vs. NCBI nr
Match: KAA0059585.1 (uncharacterized protein E6C27_scaffold54G00040 [Cucumis melo var. makuwa] >TYK25791.1 uncharacterized protein E5676_scaffold640G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 6.14e-08
Identity = 27/37 (72.97%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 13  RNDNHLHLKCGHHPYLQCDTVEMIIIFIFNTTKQRRS 49
           R+D+HLHLK G H +LQC+TVEMIIIFIFNT +QR+S
Sbjct: 939 RDDHHLHLKYGRHLHLQCNTVEMIIIFIFNTVQQRQS 975

[Close]

BLAST of IVF0008614 vs. NCBI nr
Match: TYK00348.1 (hemolysin expression modulating protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 6.68e-08
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 13  RNDNHLHLKCGHHPYLQCDTVEMIIIFIFN-------TTKQRRSSSSSSMRRSLGDHHLQ 72
           R D+HLHL       L    +E III+IF+       +  Q+R  SSSSM+  +GDHHL+
Sbjct: 102 REDHHLHL-------LTFVVIERIIIYIFSHVCRWSLSQMQQRRRSSSSMQHGVGDHHLK 161

Query: 73  CGTDDHSLQCGTHD 79
           CGT +H L+CG +D
Sbjct: 162 CGTGNHHLECGAYD 168

The following BLAST results are available for this feature:

BLAST of IVF0008614 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0008614 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC34	8.9e-26	87.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UDW0	9.9e-17	83.02	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U1J1	4.6e-06	58.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V172	6.0e-06	71.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BML3	1.0e-05	43.42	Hemolysin expression modulating protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of IVF0008614 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051997.1	1.53e-32	87.32	hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa] >TYK0456...	[more]
KAA0051895.1	1.04e-21	83.02	gag protease polyprotein [Cucumis melo var. makuwa] >TYJ99890.1 gag protease pol...	[more]
KAA0047505.1	2.03e-08	54.67	hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa]	[more]
KAA0059585.1	6.14e-08	72.97	uncharacterized protein E6C27_scaffold54G00040 [Cucumis melo var. makuwa] >TYK25...	[more]
TYK00348.1	6.68e-08	44.59	hemolysin expression modulating protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0008614 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008614.1	IVF0008614.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity