IVF0008328 (gene) Melon (IVF77) v1

Overview


Name	IVF0008328
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr09: 9827128 .. 9827358 (-)
RNA-Seq Expression	IVF0008328
Synteny	IVF0008328

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCAAGAAGAAGAAGAAACTATGAAAAATGTAGCCTATGGTGTCATAGTTTTAAACCTAAGAGACAATGTTCTTAGGGAGGTCATTGGTGAAGAAACAGCTTATGGAATGTGGAAGAAATTAGAAGAACTTTATCAGTCCAAAGACTTACCAAACCGTGCATGCGTGAGAGAGAGATTCTTTACCTTCAAGATGGATTGCAACAAATCTTTTGACAAAAAATCTTGA

mRNA sequence

ATGACTCAAGAAGAAGAAGAAACTATGAAAAATGTAGCCTATGGTGTCATAGTTTTAAACCTAAGAGACAATGTTCTTAGGGAGGTCATTGGTGAAGAAACAGCTTATGGAATGTGGAAGAAATTAGAAGAACTTTATCAGTCCAAAGACTTACCAAACCGTGCATGCGTGAGAGAGAGATTCTTTACCTTCAAGATGGATTGCAACAAATCTTTTGACAAAAAATCTTGA

Coding sequence (CDS)

ATGACTCAAGAAGAAGAAGAAACTATGAAAAATGTAGCCTATGGTGTCATAGTTTTAAACCTAAGAGACAATGTTCTTAGGGAGGTCATTGGTGAAGAAACAGCTTATGGAATGTGGAAGAAATTAGAAGAACTTTATCAGTCCAAAGACTTACCAAACCGTGCATGCGTGAGAGAGAGATTCTTTACCTTCAAGATGGATTGCAACAAATCTTTTGACAAAAAATCTTGA

Protein sequence

MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDCNKSFDKKS

Homology

[Close]

BLAST of IVF0008328 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.9e-05
Identity = 24/72 (33.33%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 1   MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRER 60
           M  E+   +   A   I L+L D+V+  +I E+TA G+W +LE LY SK L N+  ++++
Sbjct: 47  MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQ 106

Query: 61  FFTFKMDCNKSF 73
            +   M    +F
Sbjct: 107 LYALHMSEGTNF 118

[Close]

BLAST of IVF0008328 vs. ExPASy TrEMBL
Match: A0A5D3BAU2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00010 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-25
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRER 60
          MTQEE+ETM+NVAYG IVLNL DNVL+EVIGEET YGMWKKLEELYQSKDLPNRA +RER
Sbjct: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60

Query: 61 FFTFKMDCNKS 72
          F T+KMD NKS
Sbjct: 61 FLTYKMDDNKS 71

[Close]

BLAST of IVF0008328 vs. ExPASy TrEMBL
Match: A0A5A7V6Z9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00070 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRER 60
          MT EE+ETM+N  YG IVLNL DNVLREVI E+T YGMWKKLEELYQSKDLPNRA VRER
Sbjct: 1  MTHEEKETMENAPYGAIVLNLSDNVLREVISEQTTYGMWKKLEELYQSKDLPNRAYVRER 60

Query: 61 FFTFKMDCNKS 72
          FFTFKMD NKS
Sbjct: 61 FFTFKMDGNKS 71

[Close]

BLAST of IVF0008328 vs. ExPASy TrEMBL
Match: A0A5A7V1L8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00060 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRER 60
          MTQE++ETM+  AYG IVLNL DNV+REVI EE AYGMWKKL+ELYQSKDL N A VRER
Sbjct: 1  MTQEDKETMEKAAYGAIVLNLSDNVIREVIDEEIAYGMWKKLDELYQSKDLTNCAYVRER 60

Query: 61 FFTFKMDCNKS 72
          FFTFKMD N S
Sbjct: 61 FFTFKMDDNNS 71

[Close]

BLAST of IVF0008328 vs. ExPASy TrEMBL
Match: A0A5D3DXZ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00130 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 9  MKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDC 68
          M+N  YG IVLNL DNVLREVIGEET YGMWKKLEELYQ KDLPNRA VRERFFTFKMD 
Sbjct: 1  MENAVYGAIVLNLSDNVLREVIGEETTYGMWKKLEELYQHKDLPNRAFVRERFFTFKMDD 60

Query: 69 NK 71
          NK
Sbjct: 61 NK 62

[Close]

BLAST of IVF0008328 vs. ExPASy TrEMBL
Match: A0A5D3CYB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00590 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.5e-17
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 9  MKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDC 68
          M+N  YG IVLNL D+VLRE IGEE AY MWKKLEELY+SKDL NRA  RERFFTFKMD 
Sbjct: 1  MENAGYGAIVLNLSDSVLREFIGEERAYEMWKKLEELYKSKDLLNRAYGRERFFTFKMDD 60

Query: 69 NK 71
          NK
Sbjct: 61 NK 62

[Close]

BLAST of IVF0008328 vs. NCBI nr
Match: TYJ96960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (315), Expect = 1.37e-35
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRER 60
          MTQEE+ETM+NVAYG IVLNL DNVL+EVIGEET YGMWKKLEELYQSKDLPNRA +RER
Sbjct: 1  MTQEEKETMENVAYGAIVLNLSDNVLKEVIGEETTYGMWKKLEELYQSKDLPNRAYMRER 60

Query: 61 FFTFKMDCNKS 71
          F T+KMD NKS
Sbjct: 61 FLTYKMDDNKS 71

[Close]

BLAST of IVF0008328 vs. NCBI nr
Match: KAA0063883.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 7.89e-34
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRER 60
          MT EE+ETM+N  YG IVLNL DNVLREVI E+T YGMWKKLEELYQSKDLPNRA VRER
Sbjct: 1  MTHEEKETMENAPYGAIVLNLSDNVLREVISEQTTYGMWKKLEELYQSKDLPNRAYVRER 60

Query: 61 FFTFKMDCNKS 71
          FFTFKMD NKS
Sbjct: 61 FFTFKMDGNKS 71

[Close]

BLAST of IVF0008328 vs. NCBI nr
Match: KAA0059755.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ99769.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (282), Expect = 1.07e-30
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 1  MTQEEEETMKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRER 60
          MTQE++ETM+  AYG IVLNL DNV+REVI EE AYGMWKKL+ELYQSKDL N A VRER
Sbjct: 1  MTQEDKETMEKAAYGAIVLNLSDNVIREVIDEEIAYGMWKKLDELYQSKDLTNCAYVRER 60

Query: 61 FFTFKMDCNKS 71
          FFTFKMD N S
Sbjct: 61 FFTFKMDDNNS 71

[Close]

BLAST of IVF0008328 vs. NCBI nr
Match: TYK28110.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (277), Expect = 8.50e-30
Identity = 53/62 (85.48%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 9  MKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDC 68
          M+N  YG IVLNL DNVLREVIGEET YGMWKKLEELYQ KDLPNRA VRERFFTFKMD 
Sbjct: 1  MENAVYGAIVLNLSDNVLREVIGEETTYGMWKKLEELYQHKDLPNRAFVRERFFTFKMDD 60

Query: 69 NK 70
          NK
Sbjct: 61 NK 62

[Close]

BLAST of IVF0008328 vs. NCBI nr
Match: KAA0049584.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK15944.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.61e-24
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 9  MKNVAYGVIVLNLRDNVLREVIGEETAYGMWKKLEELYQSKDLPNRACVRERFFTFKMDC 68
          M+N  YG IVLNL D+VLRE IGEE AY MWKKLEELY+SKDL NRA  RERFFTFKMD 
Sbjct: 1  MENAGYGAIVLNLSDSVLREFIGEERAYEMWKKLEELYKSKDLLNRAYGRERFFTFKMDD 60

Query: 69 NK 70
          NK
Sbjct: 61 NK 62

The following BLAST results are available for this feature:

BLAST of IVF0008328 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.9e-05	33.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of IVF0008328 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BAU2	1.6e-25	84.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V6Z9	1.3e-24	83.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V1L8	1.0e-21	77.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DXZ1	3.0e-21	85.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CYB2	4.5e-17	77.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of IVF0008328 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96960.1	1.37e-35	84.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0063883.1	7.89e-34	83.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0059755.1	1.07e-30	77.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK28110.1	8.50e-30	85.48	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0049584.1	1.61e-24	77.42	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of IVF0008328 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 9..71 e-value: 2.0E-14 score: 53.5
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 4..72
None	No IPR available	PANTHER	PTHR34676:SF12	ZINC FINGER, CCHC-TYPE, RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN PROTEIN-RELATED	coord: 4..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008328.2	IVF0008328.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003743	translation initiation factor activity