IVF0008206 (gene) Melon (IVF77) v1

Overview
NameIVF0008206
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Locationchr08: 28773248 .. 28780790 (+)
RNA-Seq ExpressionIVF0008206
SyntenyIVF0008206
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTTATTTGTTGTCATAAAAGGTAAATTCATTAAATAATTAATAAAAATATTTTTTATTCAAATTTATTAAAATAAAAGTTAATTAAAATGCATTTTAATAAAAAAAAAAGAAACTCTCACGCTCTTCATCTCCCTTTCCTTTCTCTCAAAGCTGTCAACCCTTGCTTTCCTCAAACCATCACGATAAACCTCACGCACGCCTCTCCACTTCCTTCAAACGTTGTCGGCCATGGGACGCACGAACTCCACCCTCTGCAAACGCCTCCAACCATCTCCATTTGATATCAGAGGACCGAACTCCACCCTTAAGTAATTCAAATGTCCGCTATCAGAGGAGTTTCGAGTTCCAGCGGCCATTCAAGGATCCAATTGGCTATCCGTCCCTAGTGTTCCTCGGCCGCCGTCGGCAGCGTTTCGTCAGGTTAGGATTTTCTTCATTTTTCAGTTCTTCAGTTTTCTTCTCCCTGTTACAGTGTGCATTGAAATACGACGTATAGCATTGCCCTAAATTTATGTTATTGGGTTTTAGCGTTTTAGTTGAATTTAGGTTTTTAGATTCATGGGTTTGAATAGAATGTTTCTTGAAGTATTGGGACATTTGGATCTTTGATGTAGAAAGTTAATGGGTTTAACATTGTTTTGTTCTCTATCATCGACTTGTGAATCGAATTTGAGGTTAACACCTCAAGATTTTGATATGTATTTGCAACCACATTTTGTTGTAGTTTCTACACAGAGATAGTTTGGTTTAGCTCTGTTGTGATGAACTTAAATCTCGCTAGAAACTTAGGAGTTGTGTTTTGGATTTCCTAGTAATCAAAGAGTTAATTTTGTTTGCCCTATATTTTTGAATTATTAGAAGTGGTTGTTGCTAATTCCTGATTTAAGTTGTAATCGTGGATAACTGAGGATGTGCAATGATCGAACTTCATTTTGGTCCGTTTCTAATTTGTTTTTAACCTATTTCTAGATTGAATTGAAAGAGGATTGTTAATGTGATTAATATCTGGCACTTTGAACGTGGTAAATGATCCTTATCTTTGGTGTTTGGACTATGGATATTTTCTTAACTTGGATAAATAGATGAGCTACTAAACACTAACATGGTTGTTTTTGTTTTTCAGTTGGCTCTGTTCAATTTTCATTCCTTCCTGATAGTAATCCTTTTGGGAATTTGTACTTGTACCTATGTGAAGATGCATTTTCTTGCTATTCTTGAGCAAGGAAATGGGTACTTTCTTCTTGTCTCTTTTTCCATATACAGAATTGAGATAGATATAGAAAATCAGGTCTAACATGTTGGCTGAGTGTTTCTTTCATTCTTTCTCAATGAAAACTATATGGTTCATAAAAAAAAAATCACTGACTCGGCTGTTCTTGCTGTGCAAAATCATTACCTCTTATTTCCAAAATACGTACACATTATAAATTCCATATAGTTTCTAATTGAGTTGTTCATCTGACAGGTTTTGTGGCTTCTTTTGGAAAGTAGCCAGAATAGGTAGGATTCTTGATTAAACATTTTTTTACAACCCCGAATCTTTTGCTGTAATAATTTATAAGATATAGAAGAGCTATAGGAATCTGAACTCTTTCCTTTCTTCTCACTACAAGAATGAGGTCTTTGAATAGCCTTTAAGGATAACCTATTTTAAATTGGGCTATTGAAAAGAAAAAGAAAAAAAAAAGTAGGAAATAAAAAAATTTATCTCGCCCAATATTTCCCCCTTTGGAGCCTTTCACGTTTTTTCTCTTTTACTCAAGCAGACCACCCATGCAACCGAAATGATGAGACGACACTTTCATCTCTTTTGCTGCAATACCCACCCACGTTCCGTCTCACACGATTGTCATTCAACAGAAGACAACGTCGTCGTGGTTTCTGTTTAATTGCCAACGCTGAAGCTCTGGCACCACCATCGTCTACAAGGGTTTCGCTTAGGGTTCTTCGAGGTTAGTCTTCTTCCTTTCTTCACCACGTCAATCTATAGAGAGAAATAGGAAGCCAAAACCGAAATCTCTCTCTCTGTTTCACTTCCATGGCTTCCGACCAACTTCCTGTAGAAAAAGCAATCCTTCTCAAGTTCTTGACGAAGCTTATGATATCAAGGTTTCTCTCTACTTCCACTTCTCTTATTTTCTCTCCTTTTGTCTTTCTTTCTCAAGAAACCAAAATTTTTCAACAAAATTAGTTTAATATTACTCCTTGTTCATTTTCTTTTCTTTTTGATTATTATTATCAATCTTGATAATAATAATCTGTATTTTACACTTGGCTTGATAATATTATGTAACACCCCATAAATTTAAGAAACTTATTTTGGGTGTTACATTAACTGGTCTTCGAAGTTAAGAAATGTATTCAGTTGTTTTGTGTTGGATTAATTTAATATACATACACGGATGTGTATATTTAATTAAAGATTTTGGAGTTTGGTAGAAATTGTTATTAATTAAGACATGAGAGTCAAGTATCCCAAGTTGTTCAAAGATTAGAACTTTCGAGGACAAAAGTTTCATAAAGGAGAAGATTGTAACGCCCAAAAATTAAGATAATTTTGGAGTTAATTATCTTAATTTTGTTTAATTAAATTTAATTTATTGGGTGTTATTTTGAATTCATTTAATGAGAATTATTTGATTTATGTGAAAATTGAAATTAATTAAATATTTGTTGGATAAATATTTAATTAATTAGAGGTTTTGACATGTGGTGTTTGTTGAGTTTTTGATTAAATGATAGGTTAAGAGGATTAAGTAAAGTTGTGGATTTTTAGTATTGTTGAAGTTGAATTTAATTAAATAATTATGGATGTTATTTAATTAAATTGTGGGGTGGAAAGTTTGTTGGAGATTTAATAATTATATGTATATGTGGATATATATAATTATTATGTTAAAGGAAAAGATAATTATATTTGTTGAAATATAATTATTTAAAGAAAAGATAATTGTATTTTGGAGAAAGAATATTTATTAAGGGAGAAAAAGTAAAATAATTATATTTTGGGAAAATATAATTATTTGTAAAGTATAATTATTTTGGAGAAAGATAAATAATAATTAATTATTGTGGAAGATAATTAATTACTTTGGAGAAAGATAAAAATAATAATTAATTATCGTAGAAGATAATTAATTATTTTGGAGAAAGATAAATAATAATTAATTATTGTGGAAGATAATTAATTATTTTAGAGAAAAATAAATAATAATTAATTATTGTTGAAGACAATTAATTATTTTAGAGAAATATAATTCGTGTTGGAAGTTACAAGTGATTTATTTGAAAAAATTTGATTGATTAAATTAATTGAGGATTTAAGTTAATTTGAAATTTTGGAGGGAAAAGTTGGTTTTGGTGGAATTGGAATTAATTGAGTATATATATGGATATATATCTTTAATTAATAATTTGAAAAAGTAAAATTAATTATATGTTGGAATATAATTATATTTATTTGGAAAAGAATATAATTCATTAAAAGAGAGATGGTTGATTTGATTGGACAAAAAAGATATATATTTATTTATAAGAGAGAATAATGGTTTAAATAAATATATATGTTTATTGTAGATTTTGGTGAGAGAAAAATAATAATAATAAAGAAGTATTATTATTATTATTAATGATTATAAATGCAAATAATGAAAATTTGTTTGGTTCAATTGCTTCCGCGTTTATGTATTAGTGTTTCAGTATTCCGTTTTTAATGAAAATTTAGTATTCCCTCTTTTCACGAGAGTGTCTATTGTTATTGTTTTTCTAGTAATGATCTCAGCTTAAATCCTCAAACTTCCAAAGAGACCAATCTTAATTACAACTGCTCTTAATTACAACGACAACGGTAGAGAGTTATCTTAAATAAGAAGATGAACAACTTTTTTCTTTTTACTTTACTTTCTAACTTAAGCATTCCAATGCTATTTATAAACCCAAATAATAACAATAATATTTATTATTATTATTATTTCCTTTTCCTTTAATATATATATATAGATGTCTTAAATGCACAAAAACTTAGGCATTTATAATCATTAATAATAATAATAATAATAATACTTTTTTATTATTATTATTATTTTTCTCTCACTAAAATCTACAATAAACATATATATTTATTTAAACAATTATTCTCTCTTATAAATAAATATATATTTTTTTCTTCCAATCAAATCAACCATCTCTCTTCTAATGAATTATCTTTTTTTCCAAATAAATATAATTATATTCCAACATATAATTAATTTTACTTTTTCTAATTATTAATTAAAGATATATATATCCATATATATACTCAATTAATTCCAATTCCACCAAAACCAACTTTTCCCTCCAAAATTTCAAATTAACTTAAATCCTCAATTAATTTAATCAATCAAATCTTTTCAAATAAATCACTTATAACTTCCAACACGAATTATATTTCTATAAAATAATTAATTGTCTTCAACAATAATTAATTATTATTTATTTTTCTCTAAAATAATTAATTATCTTCCACAATAATTAATTATTATTTATCTTTCTCCAAAGTAATTAATTATCTTCCACGATAATTAATTATTTTTTATCTTTCTCCAAAGTAATTAATTGTCTTCCACAATAGTTAATTATTATTTATCTTTCTCCAAAATAATTATCCTTTACAAATAATTATATTTTCCCAAAATATAATTATTTTACTTTTTCTCCCTTAATAAATATTCTTTCTCCAAAATACAATTATCTTTTCCTTAAATAATTATATTTTAACAAATATAATTATCTTTTCCTTTAACATAATAATTATATATATCCATATATACATATAATTATTAAATCCCCAACAAACTTTCCACCCCACAATTTAATTAAATAACATCCATAATTATTTAATTAAATTCAACTTCAACAACACTAAAAATCCACAACTTTACTTAATTCTATTAACCTATCATTTAATCAAAAACTCAACAAACACCACATGTCAAAACCTCTAATTAATTAAATATTTATCCAACAAATATTTAATTAATTTCAATTCTCACATAAATCAAATAATTCTCATTAAATGAATTCAAAATAACGCCCAATAAATTAAATCTAATTAAACAAAATTAAGATAATTAACTCCAAAATCATCTTAATTTTTGGGGCGTTACATATTAAATCTGTATTCTACACTTGTAAAGTTCAAAACACTCTCATAGGGAAGAAAGGTATAATAATGTTCTTATTTGTAAATGTATAGTATTTGGATGTTACATATAGACATATAAGATGTATGAAAGAAAGGTAAATGTAAAAACTGGGATTACAAGTTTCAATATATACTTTCCTTTTGCAAAGGACATATTATAAACTCAATGCCATAAAAAATTGACCAACTCCTCAAGAGAATTGAATCATTTTAAAGGTTGTATCTGTCACTTAATTCTGACAACATGAGCTTTTCGATCAGTTGAGAGTGTTTCATTCATTTAGGCAATTTGAAGTAAGAGTTCATTGATTTTTGGAAATAAAATTATGTAAACTAACTTCTATATTTAAACAAACAAAATGAAGTAGTGAAGTGTTAATTAAAATATTGTTTCTGAAATTTGTACTTAATTCTGTTCATAGTTCTCATCTTATTGAAACCGTTGAAAATTCTAATCAAATACTAAACAGTAAACACAAACAATTTTTTATTTATTTCATTTTCTCAAGCCCTAGGTTCTTTTTTATTACGTTACTGATTTTATTTGATTCGGTGAAATTGAATTAGAATGAAAAATCAAAGTACAGTAACGTGTTGTTATCTATGACTACGAAGGTTCTTTTCCACATTCACATTACATTTTGCAATGAAATGCACAGGTTATCTATGATTCATCTTCATTATTATTTTTATGCATACTTTTTGACTCTGTTATAAAAGTATGCTCTTGGATTTACTGAAATTTCAGTGAGTTTATTTCCAGAAAACCAGGTTCAAACCATAGTCAACTTTCCAATCTTGGAAATTCAGGGAATCAGATAAAGAGAATATTGGCCCCAAATTCGAGGTTTGTAGTTTTTGCGAATAGAAAATTTATTGTTCTTTTCCTCATACTCCATTTGTTCAAGTTCAAGTTGTTAGATTATAAGTTTTTTGCATTTGATTTCACATTCATACATTCATTCTTTCATTGCTTTTGGTTAAAGTTTTACCTCAACTTTGATTGTCTTCTTATTCTTATATTGTTGCTTAGGTTCGATCACTATATTTGACGGATATTCTATCTTAATCTTTACACATATAGCTTCGTTGTAACTTTTGTTGCAGTTGCTTGGGATGGTAGTAGAGTAAGAGTGGTTGTTTCTTGGTAGCAATTTTTTATAAATACTATTTCTCTATAGTGTATAATTAAACAAAGTTACTAAGCTTTTTAGCTGGTGCTGGCTTTTTGTTCTTGAATTCAATTAGTGATAAGTTTTAGTCACAGTTCGTTGTGCTTGCAAAGGAGCTGGTTTATATTTTTATGGAAAATGTGTCTATGGACAAGGGAGGTGAACTAGGTGGCTTACATATGCCATTGACTTTTGGGTTCTTTTGACACTTATGGTTCTCTTTGATTTTCTTTTGGTTCTTTGTTGCTACAATTGTTAGGATAGGATGGAAACTTGTTCAGTCATATGTGATTGTGATATTGTGAGATTTATTCAAATACTATTTAATGAGCAAGCTGGTAATTGATGGAGTCATTTGCTGTGATTTTTGGTCAGCGATGAGTGATATTATTAAAGAATTATAGTATGTTAAATGTTGATCTTCTCAATCTGTAGACTGGAACTTCGTAAATACCCTTTTGATTTAGTTTGCATTAATAATTGAAGTTGATGGAGTCTTTCCAAATTTTGTGACTATTCTCCCTTTGTCACTTATGTCAAGTGGAACTGTTTTTTGTAAAACTCAATTAGCAAGGAAGTATCCTTTTCAGTTTTGTAACTTTTTCCATCATCTTCTGATAAAGACATGGTTACTCATTTTTAATATAATTCTGCAAAGCAAATGAAAATAAAAAATATGACTCCCCCACAAACCTTTTAAATACTCTAAATGACATTTATTTTTGAAAGATTAGGTACTTTATTGTTAAAAGTTTGAACTTTGAGAATTTGGAGTTATCTGTACAACAAGGGGTATTTGCAACTCAAAGAAGCAGTGAAGCTTTTGACTTTGGTGATAATGTTATTTTGCTTTTCTCAGTTAACCGGACTACTCGTTTTCAGGTGCTAACCATTCCTTATTGAATTTGTGTGTGACGATATGATGTGGATTCACTCAATAATTTATTGCATGTACCTGAAGGACCAATCACAAAGCGCAAGGCAAAGAAGATACAAGAGGCTTTCACACTGCATGTTCAAAAATTGGCAAATGCACAACGAGAAACCAAGAATTTTGAACTCAAATTCTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGCATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAATTTGGAAGATGGCACGGGGAACGAAAAAAGTGTGCAGAATTTGTGA

mRNA sequence

ATGACAGTTATTTGTTGTCATAAAAGCTGTCAACCCTTGCTTTCCTCAAACCATCACGATAAACCTCACGCACGCCTCTCCACTTCCTTCAAACGTTGTCGGCCATGGGACGCACGAACTCCACCCTCTGCAAACGCCTCCAACCATCTCCATTTGATATCAGAGGACCGAACTCCACCCTTAAGTAATTCAAATGTCCGCTATCAGAGGAGTTTCGAGTTCCAGCGGCCATTCAAGGATCCAATTGGCTATCCGTCCCTAGTGTTCCTCGGCCGCCGTCGGCAGCGTTTCGTCAGGTTTTGTGGCTTCTTTTGGAAAGTAGCCAGAATAGACCACCCATGCAACCGAAATGATGAGACGACACTTTCATCTCTTTTGCTGCAATACCCACCCACGTTCCGTCTCACACGATTGTCATTCAACAGAAGACAACGTCGTCGTGGTTTCTGTTTAATTGCCAACGCTGAAGCTCTGGCACCACCATCGTCTACAAGGGTTTCGCTTAGGGTTCTTCGAGGACCAATCACAAAGCGCAAGGCAAAGAAGATACAAGAGGCTTTCACACTGCATGTTCAAAAATTGGCAAATGCACAACGAGAAACCAAGAATTTTGAACTCAAATTCTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGCATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAATTTGGAAGATGGCACGGGGAACGAAAAAAGTGTGCAGAATTTGTGA

Coding sequence (CDS)

ATGACAGTTATTTGTTGTCATAAAAGCTGTCAACCCTTGCTTTCCTCAAACCATCACGATAAACCTCACGCACGCCTCTCCACTTCCTTCAAACGTTGTCGGCCATGGGACGCACGAACTCCACCCTCTGCAAACGCCTCCAACCATCTCCATTTGATATCAGAGGACCGAACTCCACCCTTAAGTAATTCAAATGTCCGCTATCAGAGGAGTTTCGAGTTCCAGCGGCCATTCAAGGATCCAATTGGCTATCCGTCCCTAGTGTTCCTCGGCCGCCGTCGGCAGCGTTTCGTCAGGTTTTGTGGCTTCTTTTGGAAAGTAGCCAGAATAGACCACCCATGCAACCGAAATGATGAGACGACACTTTCATCTCTTTTGCTGCAATACCCACCCACGTTCCGTCTCACACGATTGTCATTCAACAGAAGACAACGTCGTCGTGGTTTCTGTTTAATTGCCAACGCTGAAGCTCTGGCACCACCATCGTCTACAAGGGTTTCGCTTAGGGTTCTTCGAGGACCAATCACAAAGCGCAAGGCAAAGAAGATACAAGAGGCTTTCACACTGCATGTTCAAAAATTGGCAAATGCACAACGAGAAACCAAGAATTTTGAACTCAAATTCTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGCATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAATTTGGAAGATGGCACGGGGAACGAAAAAAGTGTGCAGAATTTGTGA

Protein sequence

MTVICCHKSCQPLLSSNHHDKPHARLSTSFKRCRPWDARTPPSANASNHLHLISEDRTPPLSNSNVRYQRSFEFQRPFKDPIGYPSLVFLGRRRQRFVRFCGFFWKVARIDHPCNRNDETTLSSLLLQYPPTFRLTRLSFNRRQRRRGFCLIANAEALAPPSSTRVSLRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMAREKLCNLEDGTGNEKSVQNL
Homology
[Close]
BLAST of IVF0008206 vs. ExPASy TrEMBL
Match: A0A5A7UEI2 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G003620 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.0e-30
Identity = 74/78 (94.87%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 168 LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE 227
           L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE
Sbjct: 911 LHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE 970

Query: 228 KLCNLEDGTGNEKSVQNL 246
           KLCN EDGTGNEKSVQNL
Sbjct: 971 KLCNFEDGTGNEKSVQNL 988

[Close]
BLAST of IVF0008206 vs. ExPASy TrEMBL
Match: A0A5A7UZP1 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G001110 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-30
Identity = 74/78 (94.87%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 168  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE 227
            L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEH VKMARE
Sbjct: 1187 LHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHEVKMARE 1246

Query: 228  KLCNLEDGTGNEKSVQNL 246
            KLCNLEDGTGNEKSVQNL
Sbjct: 1247 KLCNLEDGTGNEKSVQNL 1264

[Close]
BLAST of IVF0008206 vs. ExPASy TrEMBL
Match: A0A5D3DRJ1 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-30
Identity = 74/78 (94.87%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 168  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE 227
            L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEH VKMARE
Sbjct: 1408 LHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHEVKMARE 1467

Query: 228  KLCNLEDGTGNEKSVQNL 246
            KLCNLEDGTGNEKSVQNL
Sbjct: 1468 KLCNLEDGTGNEKSVQNL 1485

[Close]
BLAST of IVF0008206 vs. ExPASy TrEMBL
Match: A0A5D3BWE8 (F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-30
Identity = 74/78 (94.87%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 168  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE 227
            L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE
Sbjct: 1427 LHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE 1486

Query: 228  KLCNLEDGTGNEKSVQNL 246
            KLCNLEDGT NEKSVQNL
Sbjct: 1487 KLCNLEDGTRNEKSVQNL 1504

[Close]
BLAST of IVF0008206 vs. ExPASy TrEMBL
Match: A0A5D3BI77 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001240 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.7e-29
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 0 

Query: 168 LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE 227
           L +  G ITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKM RE
Sbjct: 373 LHIPEGSITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMTRE 432

Query: 228 KLCNLEDGTGNEKSVQNL 246
           KLCNLEDG GNEKSVQNL
Sbjct: 433 KLCNLEDGMGNEKSVQNL 450

[Close]
BLAST of IVF0008206 vs. NCBI nr
Match: TYK20861.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 4.56e-35
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 168 LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE 227
           L V  G ITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEH VKMARE
Sbjct: 197 LHVPEGSITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHRVKMARE 256

Query: 228 KLCNLEDGTGNEKSVQN 244
           KLCNLEDGTGNEKSVQN
Sbjct: 257 KLCNLEDGTGNEKSVQN 273

[Close]
BLAST of IVF0008206 vs. NCBI nr
Match: KAA0065364.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 4.56e-35
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0 

Query: 168 LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE 227
           L V  G ITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEH VKMARE
Sbjct: 197 LHVPEGSITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHRVKMARE 256

Query: 228 KLCNLEDGTGNEKSVQN 244
           KLCNLEDGTGNEKSVQN
Sbjct: 257 KLCNLEDGTGNEKSVQN 273

[Close]
BLAST of IVF0008206 vs. NCBI nr
Match: KAA0051909.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 6.35e-35
Identity = 74/78 (94.87%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 168 LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE 227
           L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE
Sbjct: 911 LHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE 970

Query: 228 KLCNLEDGTGNEKSVQNL 245
           KLCN EDGTGNEKSVQNL
Sbjct: 971 KLCNFEDGTGNEKSVQNL 988

[Close]
BLAST of IVF0008206 vs. NCBI nr
Match: KAA0059666.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (357), Expect = 2.28e-34
Identity = 74/78 (94.87%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 168  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE 227
            L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEH VKMARE
Sbjct: 1187 LHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHEVKMARE 1246

Query: 228  KLCNLEDGTGNEKSVQNL 245
            KLCNLEDGTGNEKSVQNL
Sbjct: 1247 KLCNLEDGTGNEKSVQNL 1264

[Close]
BLAST of IVF0008206 vs. NCBI nr
Match: TYK26105.1 (F15O4.13 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (357), Expect = 2.34e-34
Identity = 74/78 (94.87%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 168  LRVLRGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHGVKMARE 227
            L V  GPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEH VKMARE
Sbjct: 1408 LHVPEGPITKRKAKKIQEAFTLHVQKLANAQRETKNFELKFLYNVSSASQEEHEVKMARE 1467

Query: 228  KLCNLEDGTGNEKSVQNL 245
            KLCNLEDGTGNEKSVQNL
Sbjct: 1468 KLCNLEDGTGNEKSVQNL 1485

The following BLAST results are available for this feature:
BLAST of IVF0008206 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0008206 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UEI21.0e-3094.87Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7UZP13.0e-3094.87Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DRJ13.0e-3094.87F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00130 PE=4 ... [more]
A0A5D3BWE83.0e-3094.87F15O4.13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00600 PE=4... [more]
A0A5D3BI775.7e-2991.03Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
BLAST of IVF0008206 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK20861.14.56e-3593.51Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0065364.14.56e-3593.51Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0051909.16.35e-3594.87Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
KAA0059666.12.28e-3494.87Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa][more]
TYK26105.12.34e-3494.87F15O4.13 [Cucumis melo var. makuwa][more]
BLAST of IVF0008206 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008206.1IVF0008206.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0008270 zinc ion binding