Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTGCAATCGAGAGGATCATCATCTCCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATCATCTCCATCTTCTCACATGTATTGCAGTCGAAAGGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCCTCATCTCCATCTTCTCACATGTGTTATAGCTGTAAGGATCATCATCTCCATCTTCTCACATGTATTGCAGTTGAAAGGATCATCAACTTTACCTTCTCACATGTGTTACAGCTGAGAGGATCATCATCTTTATCTTCTCACATATGTTGCAAACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATTATCTCCATCTTCTCACATGTATTGCAGTTGA
mRNA sequence
ATGTGTTGCAATCGAGAGGATCATCATCTCCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATCATCTCCATCTTCTCACATGTATTGCAGTCGAAAGGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCCTCATCTCCATCTTCTCACATGATCATCAACTTTACCTTCTCACATGTGTTACAGCTGAGAGGATCATCATCTTTATCTTCTCACATATGTTGCAAACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATTATCTCCATCTTCTCACATGTATTGCAGTTGA
Coding sequence (CDS)
ATGTGTTGCAATCGAGAGGATCATCATCTCCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATCATCTCCATCTTCTCACATGTATTGCAGTCGAAAGGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCCTCATCTCCATCTTCTCACATGATCATCAACTTTACCTTCTCACATGTGTTACAGCTGAGAGGATCATCATCTTTATCTTCTCACATATGTTGCAAACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATTATCTCCATCTTCTCACATGTATTGCAGTTGA
Protein sequence
MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSLSPSSHMYCS
Homology
BLAST of IVF0008057 vs. ExPASy TrEMBL
Match:
A0A5A7TBX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00100 PE=4 SV=1)
HSP 1 Score: 298.9 bits (764), Expect = 1.5e-77
Identity = 152/209 (72.73%), Postives = 166/209 (79.43%), Query Frame = 0
Query: 1 MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAA 60
MCC+REDHHLHL TCVA RIIISIFSHVLQ +GSSS S HM C+R+DHHLHL TCVA
Sbjct: 164 MCCSREDHHLHLFTCVAIERIIISIFSHVLQLQGSSSPSSHMYCSRKDHHLHLFTCVAIE 223
Query: 61 RILISIFSH-------------------DHQLYLLTCVTAERIIIFIFSHMLQTRGSSSS 120
RI+I IFSH DH L+LLTC+ ERII F FSH+LQ RGSSS
Sbjct: 224 RIIIFIFSHVLQLQGSSSPSSHMCYSCKDHHLHLLTCIAVERIINFTFSHVLQLRGSSSL 283
Query: 121 SSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCV 180
SSH+CC+QEDHHLHLLTCVADKRIIIFIFSHVLQ+R SSSSSSHMCCSREDHHLHL TCV
Sbjct: 284 SSHICCKQEDHHLHLLTCVADKRIIIFIFSHVLQTRGSSSSSSHMCCSREDHHLHLLTCV 343
Query: 181 AIERIIIFIFSHVLQLQGSLSPSSHMYCS 191
A+E+IIIFIFSHVLQ +GS S SSHM CS
Sbjct: 344 AVEKIIIFIFSHVLQSRGSSSSSSHMCCS 372
BLAST of IVF0008057 vs. ExPASy TrEMBL
Match:
A0A5D3BVC5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00860 PE=4 SV=1)
HSP 1 Score: 210.3 bits (534), Expect = 7.0e-51
Identity = 125/201 (62.19%), Postives = 147/201 (73.13%), Query Frame = 0
Query: 1 MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLT----- 60
+CC+REDHHLHLLTCVAA R II IFSHVLQ +GSSSSSFH+C +RE+ HL+L T
Sbjct: 558 ICCSREDHHLHLLTCVAAERFIIFIFSHVLQFRGSSSSSFHICYSRENLHLNLFTYSKGS 617
Query: 61 -------CVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCR 120
C + + + DH L+LLTC A+RIIIFIF ++LQ RGS SSSSH+ C
Sbjct: 618 PSSSSPMCCSQKDLHLRFSQEDHHLHLLTCAAAKRIIIFIF-NLLQQRGSLSSSSHIYCS 677
Query: 121 QEDHHL--HLLTCVADKRII--IFIFSHVLQSR--RSSSSSSHMCCSREDHHLHLF--TC 180
+ED HL HLLTCV+ ++II IFIFSHVLQ R SSSSSSHMCCSR+D HLHL+ TC
Sbjct: 678 REDLHLHFHLLTCVSAEKIIIFIFIFSHVLQPRGSSSSSSSSHMCCSRKDLHLHLYLLTC 737
BLAST of IVF0008057 vs. ExPASy TrEMBL
Match:
A0A5A7U1J1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001320 PE=4 SV=1)
HSP 1 Score: 167.5 bits (423), Expect = 5.2e-38
Identity = 108/190 (56.84%), Postives = 125/190 (65.79%), Query Frame = 0
Query: 3 CNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARI 62
C + + + T V I I IF+HVLQ +GSSSSS H+CC+RE+HHLH
Sbjct: 34 CIKRKLSVDINTEVGRIIIFIFIFAHVLQPRGSSSSSSHICCSRENHHLH---------- 93
Query: 63 LISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVAD 122
+F DH L+L TCV ERIIIFIFSHMLQ+R SS SSS+MC QE HHL+LLTCVA
Sbjct: 94 FSYVFREDHHLHLFTCVAVERIIIFIFSHMLQSRESSFSSSNMCYSQECHHLYLLTCVAV 153
Query: 123 KRIII--FIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGS 182
++I I FIFSH LQ R SS S M SREDHHLHL VA ER IFIF H+LQ +GS
Sbjct: 154 EKIFIFNFIFSHGLQPRGPYSSLSSM-RSREDHHLHL-QSVAAER--IFIFCHMLQPRGS 208
Query: 183 LSPSSHMYCS 191
S SS M CS
Sbjct: 214 -SSSSSMCCS 208
BLAST of IVF0008057 vs. ExPASy TrEMBL
Match:
A0A5A7SWZ9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00670 PE=4 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 1.7e-36
Identity = 96/151 (63.58%), Postives = 104/151 (68.87%), Query Frame = 0
Query: 21 IIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVT 80
III IFSHVLQSKGSSS S HM CNRED+HLHLLT V A +I+
Sbjct: 183 IIIFIFSHVLQSKGSSSLSSHMRCNREDNHLHLLTSVTAKKIM----------------- 242
Query: 81 AERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSS 140
FIFSHMLQ+R SSSSSHM +EDHHLHLLTCVA +R IFIFS VLQ R SS
Sbjct: 243 ------FIFSHMLQSRELSSSSSHMFYSREDHHLHLLTCVAVERFFIFIFSLVLQLRGSS 302
Query: 141 SSSSHMCCSREDHHLHLFTCVAIERIIIFIF 172
SSS +MCCS+ED HLHL CV ERIIIFIF
Sbjct: 303 SSSFYMCCSQEDRHLHL-QCVVSERIIIFIF 309
BLAST of IVF0008057 vs. ExPASy TrEMBL
Match:
A0A5A7TUQ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G001110 PE=4 SV=1)
HSP 1 Score: 152.9 bits (385), Expect = 1.3e-33
Identity = 100/178 (56.18%), Postives = 114/178 (64.04%), Query Frame = 0
Query: 22 IISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTA 81
II IFSH+LQ +GSSSSS +MCCNR+D L+LLT V+A
Sbjct: 84 IIFIFSHMLQPRGSSSSSSYMCCNRKD------------------------LHLLTYVSA 143
Query: 82 ERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSS 141
ERIIIFIFSH+LQ RGS SSSS MC +EDHHLHLLT A +RI IFIFSH+LQ R SSS
Sbjct: 144 ERIIIFIFSHVLQPRGSLSSSS-MCYNKEDHHLHLLTYAATERIFIFIFSHMLQLRDSSS 203
Query: 142 SSSHM---------CCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSLSPSSHMYCS 191
SSSH+ + LHL TCV +ER IFIFSHVLQ +G S SSHM CS
Sbjct: 204 SSSHIFERIFIFIFSHVLQPEDLHLLTCVVVER--IFIFSHVLQPKG--SSSSHMCCS 232
BLAST of IVF0008057 vs. NCBI nr
Match:
KAA0039121.1 (hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa])
HSP 1 Score: 300 bits (767), Expect = 1.18e-95
Identity = 152/209 (72.73%), Postives = 166/209 (79.43%), Query Frame = 0
Query: 1 MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAA 60
MCC+REDHHLHL TCVA RIIISIFSHVLQ +GSSS S HM C+R+DHHLHL TCVA
Sbjct: 164 MCCSREDHHLHLFTCVAIERIIISIFSHVLQLQGSSSPSSHMYCSRKDHHLHLFTCVAIE 223
Query: 61 RILISIFSH-------------------DHQLYLLTCVTAERIIIFIFSHMLQTRGSSSS 120
RI+I IFSH DH L+LLTC+ ERII F FSH+LQ RGSSS
Sbjct: 224 RIIIFIFSHVLQLQGSSSPSSHMCYSCKDHHLHLLTCIAVERIINFTFSHVLQLRGSSSL 283
Query: 121 SSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCV 180
SSH+CC+QEDHHLHLLTCVADKRIIIFIFSHVLQ+R SSSSSSHMCCSREDHHLHL TCV
Sbjct: 284 SSHICCKQEDHHLHLLTCVADKRIIIFIFSHVLQTRGSSSSSSHMCCSREDHHLHLLTCV 343
Query: 181 AIERIIIFIFSHVLQLQGSLSPSSHMYCS 190
A+E+IIIFIFSHVLQ +GS S SSHM CS
Sbjct: 344 AVEKIIIFIFSHVLQSRGSSSSSSHMCCS 372
BLAST of IVF0008057 vs. NCBI nr
Match:
TYK02186.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 211 bits (536), Expect = 2.48e-60
Identity = 125/201 (62.19%), Postives = 147/201 (73.13%), Query Frame = 0
Query: 1 MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLT----- 60
+CC+REDHHLHLLTCVAA R II IFSHVLQ +GSSSSSFH+C +RE+ HL+L T
Sbjct: 558 ICCSREDHHLHLLTCVAAERFIIFIFSHVLQFRGSSSSSFHICYSRENLHLNLFTYSKGS 617
Query: 61 -------CVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCR 120
C + + + DH L+LLTC A+RIIIFIF+ +LQ RGS SSSSH+ C
Sbjct: 618 PSSSSPMCCSQKDLHLRFSQEDHHLHLLTCAAAKRIIIFIFN-LLQQRGSLSSSSHIYCS 677
Query: 121 QEDHHLH--LLTCVADKRIIIFIF--SHVLQSR--RSSSSSSHMCCSREDHHLHLF--TC 179
+ED HLH LLTCV+ ++IIIFIF SHVLQ R SSSSSSHMCCSR+D HLHL+ TC
Sbjct: 678 REDLHLHFHLLTCVSAEKIIIFIFIFSHVLQPRGSSSSSSSSHMCCSRKDLHLHLYLLTC 737
BLAST of IVF0008057 vs. NCBI nr
Match:
KAA0035782.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 162 bits (410), Expect = 2.08e-45
Identity = 96/151 (63.58%), Postives = 104/151 (68.87%), Query Frame = 0
Query: 21 IIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVT 80
III IFSHVLQSKGSSS S HM CNRED+HLHLLT V A +I+
Sbjct: 183 IIIFIFSHVLQSKGSSSLSSHMRCNREDNHLHLLTSVTAKKIM----------------- 242
Query: 81 AERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSS 140
FIFSHMLQ+R SSSSSHM +EDHHLHLLTCVA +R IFIFS VLQ R SS
Sbjct: 243 ------FIFSHMLQSRELSSSSSHMFYSREDHHLHLLTCVAVERFFIFIFSLVLQLRGSS 302
Query: 141 SSSSHMCCSREDHHLHLFTCVAIERIIIFIF 171
SSS +MCCS+ED HLHL CV ERIIIFIF
Sbjct: 303 SSSFYMCCSQEDRHLHL-QCVVSERIIIFIF 309
BLAST of IVF0008057 vs. NCBI nr
Match:
KAA0047505.1 (hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa])
HSP 1 Score: 160 bits (405), Expect = 2.05e-44
Identity = 115/210 (54.76%), Postives = 129/210 (61.43%), Query Frame = 0
Query: 5 REDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILI 64
REDHHLHL TCVA RIII IFSH+LQS+ SS SS +MC ++E HHL+LLTCVA +I I
Sbjct: 89 REDHHLHLFTCVAVERIIIFIFSHMLQSRESSFSSSNMCYSQECHHLYLLTCVAVEKIFI 148
Query: 65 S--IFSH------------------DHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSH 124
IFSH DH L+L + V AER IFIF HMLQ RGSSSSSS
Sbjct: 149 FNFIFSHGLQPRGPYSSLSSMRSREDHHLHLQS-VAAER--IFIFCHMLQPRGSSSSSS- 208
Query: 125 MCCRQEDHHLHLLTCV-------------ADKRIIIFIFSHVLQSRRSSSSSSHMCCSRE 178
MCC QEDHHL L C +RII+FIF+ V Q +RSSSSSS M SR
Sbjct: 209 MCCSQEDHHLRLQCCRNGEDHLHLRLQHDTTERIILFIFN-VAQQKRSSSSSS-MWRSRN 268
BLAST of IVF0008057 vs. NCBI nr
Match:
KAA0045115.1 (hypothetical protein E6C27_scaffold30G001110 [Cucumis melo var. makuwa])
HSP 1 Score: 155 bits (392), Expect = 1.18e-43
Identity = 102/180 (56.67%), Postives = 114/180 (63.33%), Query Frame = 0
Query: 22 IISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTA 81
II IFSH+LQ +GSSSSS +MCCNR+D HL LT V+A
Sbjct: 84 IIFIFSHMLQPRGSSSSSSYMCCNRKDLHL------------------------LTYVSA 143
Query: 82 ERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSS 141
ERIIIFIFSH+LQ RGS SSSS MC +EDHHLHLLT A +RI IFIFSH+LQ R SSS
Sbjct: 144 ERIIIFIFSHVLQPRGSLSSSS-MCYNKEDHHLHLLTYAATERIFIFIFSHMLQLRDSSS 203
Query: 142 SSSHM-----------CCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSLSPSSHMYCS 190
SSSH+ ED LHL TCV +ERI FIFSHVLQ +GS SSHM CS
Sbjct: 204 SSSHIFERIFIFIFSHVLQPED--LHLLTCVVVERI--FIFSHVLQPKGS--SSSHMCCS 232
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TBX4 | 1.5e-77 | 72.73 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3BVC5 | 7.0e-51 | 62.19 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
A0A5A7U1J1 | 5.2e-38 | 56.84 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7SWZ9 | 1.7e-36 | 63.58 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7TUQ7 | 1.3e-33 | 56.18 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0039121.1 | 1.18e-95 | 72.73 | hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa] | [more] |
TYK02186.1 | 2.48e-60 | 62.19 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0035782.1 | 2.08e-45 | 63.58 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0047505.1 | 2.05e-44 | 54.76 | hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa] | [more] |
KAA0045115.1 | 1.18e-43 | 56.67 | hypothetical protein E6C27_scaffold30G001110 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |