IVF0008057 (gene) Melon (IVF77) v1

Overview
NameIVF0008057
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon gag protein
Locationchr03: 16751809 .. 16752438 (-)
RNA-Seq ExpressionIVF0008057
SyntenyIVF0008057
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTGCAATCGAGAGGATCATCATCTCCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATCATCTCCATCTTCTCACATGTATTGCAGTCGAAAGGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCCTCATCTCCATCTTCTCACATGTGTTATAGCTGTAAGGATCATCATCTCCATCTTCTCACATGTATTGCAGTTGAAAGGATCATCAACTTTACCTTCTCACATGTGTTACAGCTGAGAGGATCATCATCTTTATCTTCTCACATATGTTGCAAACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATTATCTCCATCTTCTCACATGTATTGCAGTTGA

mRNA sequence

ATGTGTTGCAATCGAGAGGATCATCATCTCCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATCATCTCCATCTTCTCACATGTATTGCAGTCGAAAGGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCCTCATCTCCATCTTCTCACATGATCATCAACTTTACCTTCTCACATGTGTTACAGCTGAGAGGATCATCATCTTTATCTTCTCACATATGTTGCAAACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATTATCTCCATCTTCTCACATGTATTGCAGTTGA

Coding sequence (CDS)

ATGTGTTGCAATCGAGAGGATCATCATCTCCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATCATCTCCATCTTCTCACATGTATTGCAGTCGAAAGGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCCTCATCTCCATCTTCTCACATGATCATCAACTTTACCTTCTCACATGTGTTACAGCTGAGAGGATCATCATCTTTATCTTCTCACATATGTTGCAAACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGACAAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTCTCACATGTGTTGCAGTCGAGAAGATCATCATCTTCATCTTTTCACATGTGTTGCAATCGAGAGGATCATCATCTTCATCTTCTCACATGTGTTGCAGCTGCAAGGATCATTATCTCCATCTTCTCACATGTATTGCAGTTGA

Protein sequence

MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSLSPSSHMYCS
Homology
BLAST of IVF0008057 vs. ExPASy TrEMBL
Match: A0A5A7TBX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00100 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.5e-77
Identity = 152/209 (72.73%), Postives = 166/209 (79.43%), Query Frame = 0

Query: 1   MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAA 60
           MCC+REDHHLHL TCVA  RIIISIFSHVLQ +GSSS S HM C+R+DHHLHL TCVA  
Sbjct: 164 MCCSREDHHLHLFTCVAIERIIISIFSHVLQLQGSSSPSSHMYCSRKDHHLHLFTCVAIE 223

Query: 61  RILISIFSH-------------------DHQLYLLTCVTAERIIIFIFSHMLQTRGSSSS 120
           RI+I IFSH                   DH L+LLTC+  ERII F FSH+LQ RGSSS 
Sbjct: 224 RIIIFIFSHVLQLQGSSSPSSHMCYSCKDHHLHLLTCIAVERIINFTFSHVLQLRGSSSL 283

Query: 121 SSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCV 180
           SSH+CC+QEDHHLHLLTCVADKRIIIFIFSHVLQ+R SSSSSSHMCCSREDHHLHL TCV
Sbjct: 284 SSHICCKQEDHHLHLLTCVADKRIIIFIFSHVLQTRGSSSSSSHMCCSREDHHLHLLTCV 343

Query: 181 AIERIIIFIFSHVLQLQGSLSPSSHMYCS 191
           A+E+IIIFIFSHVLQ +GS S SSHM CS
Sbjct: 344 AVEKIIIFIFSHVLQSRGSSSSSSHMCCS 372

BLAST of IVF0008057 vs. ExPASy TrEMBL
Match: A0A5D3BVC5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00860 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 7.0e-51
Identity = 125/201 (62.19%), Postives = 147/201 (73.13%), Query Frame = 0

Query: 1   MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLT----- 60
           +CC+REDHHLHLLTCVAA R II IFSHVLQ +GSSSSSFH+C +RE+ HL+L T     
Sbjct: 558 ICCSREDHHLHLLTCVAAERFIIFIFSHVLQFRGSSSSSFHICYSRENLHLNLFTYSKGS 617

Query: 61  -------CVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCR 120
                  C +   + +     DH L+LLTC  A+RIIIFIF ++LQ RGS SSSSH+ C 
Sbjct: 618 PSSSSPMCCSQKDLHLRFSQEDHHLHLLTCAAAKRIIIFIF-NLLQQRGSLSSSSHIYCS 677

Query: 121 QEDHHL--HLLTCVADKRII--IFIFSHVLQSR--RSSSSSSHMCCSREDHHLHLF--TC 180
           +ED HL  HLLTCV+ ++II  IFIFSHVLQ R   SSSSSSHMCCSR+D HLHL+  TC
Sbjct: 678 REDLHLHFHLLTCVSAEKIIIFIFIFSHVLQPRGSSSSSSSSHMCCSRKDLHLHLYLLTC 737

BLAST of IVF0008057 vs. ExPASy TrEMBL
Match: A0A5A7U1J1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001320 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 5.2e-38
Identity = 108/190 (56.84%), Postives = 125/190 (65.79%), Query Frame = 0

Query: 3   CNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARI 62
           C +    + + T V    I I IF+HVLQ +GSSSSS H+CC+RE+HHLH          
Sbjct: 34  CIKRKLSVDINTEVGRIIIFIFIFAHVLQPRGSSSSSSHICCSRENHHLH---------- 93

Query: 63  LISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVAD 122
              +F  DH L+L TCV  ERIIIFIFSHMLQ+R SS SSS+MC  QE HHL+LLTCVA 
Sbjct: 94  FSYVFREDHHLHLFTCVAVERIIIFIFSHMLQSRESSFSSSNMCYSQECHHLYLLTCVAV 153

Query: 123 KRIII--FIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGS 182
           ++I I  FIFSH LQ R   SS S M  SREDHHLHL   VA ER  IFIF H+LQ +GS
Sbjct: 154 EKIFIFNFIFSHGLQPRGPYSSLSSM-RSREDHHLHL-QSVAAER--IFIFCHMLQPRGS 208

Query: 183 LSPSSHMYCS 191
            S SS M CS
Sbjct: 214 -SSSSSMCCS 208

BLAST of IVF0008057 vs. ExPASy TrEMBL
Match: A0A5A7SWZ9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00670 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.7e-36
Identity = 96/151 (63.58%), Postives = 104/151 (68.87%), Query Frame = 0

Query: 21  IIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVT 80
           III IFSHVLQSKGSSS S HM CNRED+HLHLLT V A +I+                 
Sbjct: 183 IIIFIFSHVLQSKGSSSLSSHMRCNREDNHLHLLTSVTAKKIM----------------- 242

Query: 81  AERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSS 140
                 FIFSHMLQ+R  SSSSSHM   +EDHHLHLLTCVA +R  IFIFS VLQ R SS
Sbjct: 243 ------FIFSHMLQSRELSSSSSHMFYSREDHHLHLLTCVAVERFFIFIFSLVLQLRGSS 302

Query: 141 SSSSHMCCSREDHHLHLFTCVAIERIIIFIF 172
           SSS +MCCS+ED HLHL  CV  ERIIIFIF
Sbjct: 303 SSSFYMCCSQEDRHLHL-QCVVSERIIIFIF 309

BLAST of IVF0008057 vs. ExPASy TrEMBL
Match: A0A5A7TUQ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G001110 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.3e-33
Identity = 100/178 (56.18%), Postives = 114/178 (64.04%), Query Frame = 0

Query: 22  IISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTA 81
           II IFSH+LQ +GSSSSS +MCCNR+D                        L+LLT V+A
Sbjct: 84  IIFIFSHMLQPRGSSSSSSYMCCNRKD------------------------LHLLTYVSA 143

Query: 82  ERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSS 141
           ERIIIFIFSH+LQ RGS SSSS MC  +EDHHLHLLT  A +RI IFIFSH+LQ R SSS
Sbjct: 144 ERIIIFIFSHVLQPRGSLSSSS-MCYNKEDHHLHLLTYAATERIFIFIFSHMLQLRDSSS 203

Query: 142 SSSHM---------CCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSLSPSSHMYCS 191
           SSSH+             +   LHL TCV +ER  IFIFSHVLQ +G  S SSHM CS
Sbjct: 204 SSSHIFERIFIFIFSHVLQPEDLHLLTCVVVER--IFIFSHVLQPKG--SSSSHMCCS 232

BLAST of IVF0008057 vs. NCBI nr
Match: KAA0039121.1 (hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 300 bits (767), Expect = 1.18e-95
Identity = 152/209 (72.73%), Postives = 166/209 (79.43%), Query Frame = 0

Query: 1   MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAA 60
           MCC+REDHHLHL TCVA  RIIISIFSHVLQ +GSSS S HM C+R+DHHLHL TCVA  
Sbjct: 164 MCCSREDHHLHLFTCVAIERIIISIFSHVLQLQGSSSPSSHMYCSRKDHHLHLFTCVAIE 223

Query: 61  RILISIFSH-------------------DHQLYLLTCVTAERIIIFIFSHMLQTRGSSSS 120
           RI+I IFSH                   DH L+LLTC+  ERII F FSH+LQ RGSSS 
Sbjct: 224 RIIIFIFSHVLQLQGSSSPSSHMCYSCKDHHLHLLTCIAVERIINFTFSHVLQLRGSSSL 283

Query: 121 SSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSSSSSHMCCSREDHHLHLFTCV 180
           SSH+CC+QEDHHLHLLTCVADKRIIIFIFSHVLQ+R SSSSSSHMCCSREDHHLHL TCV
Sbjct: 284 SSHICCKQEDHHLHLLTCVADKRIIIFIFSHVLQTRGSSSSSSHMCCSREDHHLHLLTCV 343

Query: 181 AIERIIIFIFSHVLQLQGSLSPSSHMYCS 190
           A+E+IIIFIFSHVLQ +GS S SSHM CS
Sbjct: 344 AVEKIIIFIFSHVLQSRGSSSSSSHMCCS 372

BLAST of IVF0008057 vs. NCBI nr
Match: TYK02186.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 211 bits (536), Expect = 2.48e-60
Identity = 125/201 (62.19%), Postives = 147/201 (73.13%), Query Frame = 0

Query: 1   MCCNREDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLT----- 60
           +CC+REDHHLHLLTCVAA R II IFSHVLQ +GSSSSSFH+C +RE+ HL+L T     
Sbjct: 558 ICCSREDHHLHLLTCVAAERFIIFIFSHVLQFRGSSSSSFHICYSRENLHLNLFTYSKGS 617

Query: 61  -------CVAAARILISIFSHDHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSHMCCR 120
                  C +   + +     DH L+LLTC  A+RIIIFIF+ +LQ RGS SSSSH+ C 
Sbjct: 618 PSSSSPMCCSQKDLHLRFSQEDHHLHLLTCAAAKRIIIFIFN-LLQQRGSLSSSSHIYCS 677

Query: 121 QEDHHLH--LLTCVADKRIIIFIF--SHVLQSR--RSSSSSSHMCCSREDHHLHLF--TC 179
           +ED HLH  LLTCV+ ++IIIFIF  SHVLQ R   SSSSSSHMCCSR+D HLHL+  TC
Sbjct: 678 REDLHLHFHLLTCVSAEKIIIFIFIFSHVLQPRGSSSSSSSSHMCCSRKDLHLHLYLLTC 737

BLAST of IVF0008057 vs. NCBI nr
Match: KAA0035782.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (410), Expect = 2.08e-45
Identity = 96/151 (63.58%), Postives = 104/151 (68.87%), Query Frame = 0

Query: 21  IIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVT 80
           III IFSHVLQSKGSSS S HM CNRED+HLHLLT V A +I+                 
Sbjct: 183 IIIFIFSHVLQSKGSSSLSSHMRCNREDNHLHLLTSVTAKKIM----------------- 242

Query: 81  AERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSS 140
                 FIFSHMLQ+R  SSSSSHM   +EDHHLHLLTCVA +R  IFIFS VLQ R SS
Sbjct: 243 ------FIFSHMLQSRELSSSSSHMFYSREDHHLHLLTCVAVERFFIFIFSLVLQLRGSS 302

Query: 141 SSSSHMCCSREDHHLHLFTCVAIERIIIFIF 171
           SSS +MCCS+ED HLHL  CV  ERIIIFIF
Sbjct: 303 SSSFYMCCSQEDRHLHL-QCVVSERIIIFIF 309

BLAST of IVF0008057 vs. NCBI nr
Match: KAA0047505.1 (hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (405), Expect = 2.05e-44
Identity = 115/210 (54.76%), Postives = 129/210 (61.43%), Query Frame = 0

Query: 5   REDHHLHLLTCVAAARIIISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILI 64
           REDHHLHL TCVA  RIII IFSH+LQS+ SS SS +MC ++E HHL+LLTCVA  +I I
Sbjct: 89  REDHHLHLFTCVAVERIIIFIFSHMLQSRESSFSSSNMCYSQECHHLYLLTCVAVEKIFI 148

Query: 65  S--IFSH------------------DHQLYLLTCVTAERIIIFIFSHMLQTRGSSSSSSH 124
              IFSH                  DH L+L + V AER  IFIF HMLQ RGSSSSSS 
Sbjct: 149 FNFIFSHGLQPRGPYSSLSSMRSREDHHLHLQS-VAAER--IFIFCHMLQPRGSSSSSS- 208

Query: 125 MCCRQEDHHLHLLTCV-------------ADKRIIIFIFSHVLQSRRSSSSSSHMCCSRE 178
           MCC QEDHHL L  C                +RII+FIF+ V Q +RSSSSSS M  SR 
Sbjct: 209 MCCSQEDHHLRLQCCRNGEDHLHLRLQHDTTERIILFIFN-VAQQKRSSSSSS-MWRSRN 268

BLAST of IVF0008057 vs. NCBI nr
Match: KAA0045115.1 (hypothetical protein E6C27_scaffold30G001110 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (392), Expect = 1.18e-43
Identity = 102/180 (56.67%), Postives = 114/180 (63.33%), Query Frame = 0

Query: 22  IISIFSHVLQSKGSSSSSFHMCCNREDHHLHLLTCVAAARILISIFSHDHQLYLLTCVTA 81
           II IFSH+LQ +GSSSSS +MCCNR+D HL                        LT V+A
Sbjct: 84  IIFIFSHMLQPRGSSSSSSYMCCNRKDLHL------------------------LTYVSA 143

Query: 82  ERIIIFIFSHMLQTRGSSSSSSHMCCRQEDHHLHLLTCVADKRIIIFIFSHVLQSRRSSS 141
           ERIIIFIFSH+LQ RGS SSSS MC  +EDHHLHLLT  A +RI IFIFSH+LQ R SSS
Sbjct: 144 ERIIIFIFSHVLQPRGSLSSSS-MCYNKEDHHLHLLTYAATERIFIFIFSHMLQLRDSSS 203

Query: 142 SSSHM-----------CCSREDHHLHLFTCVAIERIIIFIFSHVLQLQGSLSPSSHMYCS 190
           SSSH+               ED  LHL TCV +ERI  FIFSHVLQ +GS   SSHM CS
Sbjct: 204 SSSHIFERIFIFIFSHVLQPED--LHLLTCVVVERI--FIFSHVLQPKGS--SSSHMCCS 232

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TBX41.5e-7772.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BVC57.0e-5162.19Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7U1J15.2e-3856.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SWZ91.7e-3663.58Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TUQ71.3e-3356.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0039121.11.18e-9572.73hypothetical protein E6C27_scaffold121G00100 [Cucumis melo var. makuwa][more]
TYK02186.12.48e-6062.19retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0035782.12.08e-4563.58ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047505.12.05e-4454.76hypothetical protein E6C27_scaffold498G001320 [Cucumis melo var. makuwa][more]
KAA0045115.11.18e-4356.67hypothetical protein E6C27_scaffold30G001110 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0008057.2IVF0008057.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane