IVF0007902 (gene) Melon (IVF77) v1

Overview


Name	IVF0007902
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Location	chr04: 13117927 .. 13119165 (+)
RNA-Seq Expression	IVF0007902
Synteny	IVF0007902

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGCAATTTGAACAAGTATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTGACTATCCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCATTGTTGCGTCCCTCTGGACCAACAACTCCAAATAAGCGTGCCGCTTCCCCGGCCGCTTCTTCCTCAAGGTCTGTAATACCAAGGAATCCTTCCTCGTATTCTCAAATCGTCAGGCCCAAGATTTTCCAGCCAAGACCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAGGATCTTTCAAAAACCAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCATCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCGTGACTATACAAAGGCATGGTATATTGTATTTTGGCTCCATGCTTAGAATCATTCTTGGTTTGTGACATTTTGCAAGCAAGCTTACAAAATGCACTTCCCAAACTGGTTTCAAAATTGGTGGATGTATTTTGGACTCTCCGAGGAAATATTTCCGGTAGAAGTTCAACGTTCGTACCACCTTTTTCAACAAAGTATCTATTCGTCGCCTCTTTCAAAGACGTTTAGGTTTGCTTTGTATTTCCAAATTCTCTGGATCTTTTGCTGGAATTTCCAGCTAGGACCTTTAGGAAACTTCAAAGCCCTGAGTAAATCCCTCAGGATCAAATGGTGGGAAAAGTTCAATTACTCCCATCTTGAAGTCAACAAGATCAAGGATTGGTTTAAAGCCAATATCCATCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTCCTCCTCACCAAAAACGCAGTCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAACAACGTCGTTGTAAACCTCTCAGATGATAACGACGATTTATCAGAGGACATTTCTCCAGCCTCTATCAATAATGTCGATGACCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACTCAACCTTATTAG

mRNA sequence

ATGGATTTGCAATTTGAACAAGTATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTGACTATCCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCATTGTTGCGTCCCTCTGGACCAACAACTCCAAATAAGCGTGCCGCTTCCCCGGCCGCTTCTTCCTCAAGGTCTGTAATACCAAGGAATCCTTCCTCGTATTCTCAAATCGTCAGGCCCAAGATTTTCCAGCCAAGACCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAGGATCTTTCAAAAACCAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCATCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCGTGACTATACAAAGGCATGGATCAAATGGTGGGAAAAGTTCAATTACTCCCATCTTGAAGTCAACAAGATCAAGGATTGGTTTAAAGCCAATATCCATCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTCCTCCTCACCAAAAACGCAGTCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAACAACGTCGTTGTAAACCTCTCAGATGATAACGACGATTTATCAGAGGACATTTCTCCAGCCTCTATCAATAATGTCGATGACCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACTCAACCTTATTAG

Coding sequence (CDS)

ATGGATTTGCAATTTGAACAAGTATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTGACTATCCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCATTGTTGCGTCCCTCTGGACCAACAACTCCAAATAAGCGTGCCGCTTCCCCGGCCGCTTCTTCCTCAAGGTCTGTAATACCAAGGAATCCTTCCTCGTATTCTCAAATCGTCAGGCCCAAGATTTTCCAGCCAAGACCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAGGATCTTTCAAAAACCAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCATCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCGTGACTATACAAAGGCATGGATCAAATGGTGGGAAAAGTTCAATTACTCCCATCTTGAAGTCAACAAGATCAAGGATTGGTTTAAAGCCAATATCCATCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTCCTCCTCACCAAAAACGCAGTCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAACAACGTCGTTGTAAACCTCTCAGATGATAACGACGATTTATCAGAGGACATTTCTCCAGCCTCTATCAATAATGTCGATGACCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACTCAACCTTATTAG

Protein sequence

MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRSVIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISPASINNVDDLDYDPYEGLDINDPFLDTQPY

Homology

[Close]

BLAST of IVF0007902 vs. ExPASy TrEMBL
Match: A0A5A7T5B0 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE=4 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 1.0e-171
Identity = 312/329 (94.83%), Postives = 312/329 (94.83%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
           VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYRDYTKAW-----------------IKWWEKFNYSHLEVNKIKDWFK 240
           RKFSHPFKPPSYNYRDYTKAW                 IKWWEKFNYSHLEVNKIKDWFK
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYILGPLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFK 247

Query: 241 ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISP 300
           ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISP
Sbjct: 248 ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISP 307

Query: 301 ASINNVDDLDYDPYEGLDINDPFLDTQPY 313
           ASINNVDDLDYDPYEGLDINDPFLDTQPY
Sbjct: 308 ASINNVDDLDYDPYEGLDINDPFLDTQPY 336

[Close]

BLAST of IVF0007902 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 573.2 bits (1476), Expect = 6.8e-160
Identity = 306/412 (74.27%), Postives = 308/412 (74.76%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
            IPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYRDYTKAW--------------------------------------- 240
           RKFSHPFKPPSYNYRDYTKAW                                       
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307

Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 313
            IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367

[Close]

BLAST of IVF0007902 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 573.2 bits (1476), Expect = 6.8e-160
Identity = 306/412 (74.27%), Postives = 309/412 (75.00%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
            IPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEP+FDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPKFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYRDYTKAW--------------------------------------- 240
           RKFSHPFKPPSYNYRDYTKAW                                       
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307

Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 313
            IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367

[Close]

BLAST of IVF0007902 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 571.6 bits (1472), Expect = 2.0e-159
Identity = 305/412 (74.03%), Postives = 307/412 (74.51%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
            IPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYRDYTKAW--------------------------------------- 240
           RKFSHPFKPPSYNYRDYTKAW                                       
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307

Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 313
            IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367

[Close]

BLAST of IVF0007902 vs. ExPASy TrEMBL
Match: A0A5A7U7T9 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00530 PE=4 SV=1)

HSP 1 Score: 561.6 bits (1446), Expect = 2.0e-156
Identity = 287/319 (89.97%), Postives = 292/319 (91.54%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALL PSGPTTPNKR ASPAASSSRS
Sbjct: 61  MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLCPSGPTTPNKRVASPAASSSRS 120

Query: 61  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
            I RNPSSYSQIVR K+FQPRPPINGYFTKTTMVDLTIEPEFDGP V EVC+QIFPH FN
Sbjct: 121 AISRNPSSYSQIVRLKVFQPRPPINGYFTKTTMVDLTIEPEFDGPFVHEVCNQIFPHEFN 180

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSK RIFRVLTPSYWKQGMFVG
Sbjct: 181 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKFRIFRVLTPSYWKQGMFVG 240

Query: 181 RKFSHPFKPPSYNYRD-------YTKAWIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTR 240
           RKFSHPFKPPSYNYR             IKWWEKFNYSHLEVNKIKDWFKANIHLQ+MTR
Sbjct: 241 RKFSHPFKPPSYNYRPSGNFKALSKSLIIKWWEKFNYSHLEVNKIKDWFKANIHLQNMTR 300

Query: 241 QEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISPASINNVDDLD 300
           QEDE FLLTKNAVMSTL GASTQQEFN VVNNVVVNLSDDNDDL ED SPAS+N+VDDLD
Sbjct: 301 QEDETFLLTKNAVMSTLAGASTQQEFNFVVNNVVVNLSDDNDDLPEDASPASVNDVDDLD 360

Query: 301 YDPYEGLDINDPFLDTQPY 313
           YDPYEGLDINDPFLDTQPY
Sbjct: 361 YDPYEGLDINDPFLDTQPY 379

[Close]

BLAST of IVF0007902 vs. NCBI nr
Match: KAA0038028.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 612 bits (1578), Expect = 2.53e-220
Identity = 312/329 (94.83%), Postives = 312/329 (94.83%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
           VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYRDYTKAW-----------------IKWWEKFNYSHLEVNKIKDWFK 240
           RKFSHPFKPPSYNYRDYTKAW                 IKWWEKFNYSHLEVNKIKDWFK
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYILGPLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFK 247

Query: 241 ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISP 300
           ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISP
Sbjct: 248 ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISP 307

Query: 301 ASINNVDDLDYDPYEGLDINDPFLDTQPY 312
           ASINNVDDLDYDPYEGLDINDPFLDTQPY
Sbjct: 308 ASINNVDDLDYDPYEGLDINDPFLDTQPY 336

[Close]

BLAST of IVF0007902 vs. NCBI nr
Match: KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 573 bits (1476), Expect = 1.83e-203
Identity = 306/412 (74.27%), Postives = 308/412 (74.76%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
            IPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYRDYTKAW--------------------------------------- 240
           RKFSHPFKPPSYNYRDYTKAW                                       
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307

Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 312
            IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367

[Close]

BLAST of IVF0007902 vs. NCBI nr
Match: KAA0068172.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 573 bits (1476), Expect = 1.83e-203
Identity = 306/412 (74.27%), Postives = 309/412 (75.00%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
            IPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEP+FDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPKFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYRDYTKAW--------------------------------------- 240
           RKFSHPFKPPSYNYRDYTKAW                                       
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307

Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 312
            IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367

[Close]

BLAST of IVF0007902 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 571 bits (1472), Expect = 7.42e-203
Identity = 305/412 (74.03%), Postives = 307/412 (74.51%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
            IPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYRDYTKAW--------------------------------------- 240
           RKFSHPFKPPSYNYRDYTKAW                                       
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307

Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 312
            IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367

[Close]

BLAST of IVF0007902 vs. NCBI nr
Match: KAA0038025.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 560 bits (1444), Expect = 2.64e-200
Identity = 288/313 (92.01%), Postives = 295/313 (94.25%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 67

Query: 61  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
            IPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMF+G
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFLG 187

Query: 181 RKFSHPFKPPSYNYRDYTKAW-IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF 240
                    P  N++  +K+  IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF
Sbjct: 188 ---------PLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF 247

Query: 241 LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISPASINNVDDLDYDPYEG 300
           LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDL ED+SPAS+NNVDDLDYDPYEG
Sbjct: 248 LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEG 307

Query: 301 LDINDPFLDTQPY 312
           LDINDPFLDTQPY
Sbjct: 308 LDINDPFLDTQPY 311

The following BLAST results are available for this feature:

BLAST of IVF0007902 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007902 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5B0	1.0e-171	94.83	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE...	[more]
A0A5A7UVN1	6.8e-160	74.27	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7VIK9	6.8e-160	74.27	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7V6D1	2.0e-159	74.03	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7U7T9	2.0e-156	89.97	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00530 PE...	[more]

BLAST of IVF0007902 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038028.1	2.53e-220	94.83	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0056777.1	1.83e-203	74.27	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran...	[more]
KAA0068172.1	1.83e-203	74.27	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0063832.1	7.42e-203	74.03	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0038025.1	2.64e-200	92.01	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0007902 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	PANTHER	PTHR46249:SF31	BNAC08G47480D PROTEIN	coord: 83..202
None	No IPR available	PANTHER	PTHR46249	FAMILY NOT NAMED	coord: 83..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007902.1	IVF0007902.1	mRNA