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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTGGCAGCAAGCAAATTGGTGGCGGCGAGCACAATGGTGGCGTCGATCACAATAGTGGCGACAAGCACAATGGTGGCAGCGATGGTTATTCGAAGAAGAAACGGGCACCAGATAAGAAATGGATGGATCCCATTTGGAGAAGAAAGGGTTTGCGAGCCGCGACTAAGGAGAAGATTGAAAGAGTAA mRNA sequence ATGGTGGCAGCAAGCAAATTGGTGGCGGCGAGCACAATGGTGGCGTCGATCACAATAGTGGCGACAAGCACAATGGTGGCAGCGATGGTTATTCGAAGAAGAAACGGGCACCAGATAAGAAATGGATGGATCCCATTTGGAGAAGAAAGGGTTTGCGAGCCGCGACTAAGGAGAAGATTGAAAGAGTAA Coding sequence (CDS) ATGGTGGCAGCAAGCAAATTGGTGGCGGCGAGCACAATGGTGGCGTCGATCACAATAGTGGCGACAAGCACAATGGTGGCAGCGATGGTTATTCGAAGAAGAAACGGGCACCAGATAAGAAATGGATGGATCCCATTTGGAGAAGAAAGGGTTTGCGAGCCGCGACTAAGGAGAAGATTGAAAGAGTAA Protein sequence MVAASKLVAASTMVASITIVATSTMVAAMVIRRRNGHQIRNGWIPFGEERVCEPRLRRRLKE
Homology
BLAST of IVF0007506 vs. ExPASy TrEMBL
Match: A0A5A7UX74 (Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold551G00190 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12 Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 Query: 1 MVAASKLVAASTMVASITIVATSTMVAAMVIRRRNGHQIRNGWIPFGEE 50 MVAASKLVAA TMVASITIVATS+MVA MVIRRRNGH+ RNGWIPFGEE Sbjct: 100 MVAASKLVAARTMVASITIVATSSMVAVMVIRRRNGHRRRNGWIPFGEE 148
BLAST of IVF0007506 vs. ExPASy TrEMBL
Match: A0A5D3CE34 (Auxin response factor 18 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00430 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 4.7e-12 Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 Query: 1 MVAASKLVAASTMVASITIVATSTMVAAMVIRRRNGHQIRNGWIPFGEE 50 MVAASKLVAA TMVASITIVATS+MVA MVIRRRNGH+ RNGWIPFGEE Sbjct: 100 MVAASKLVAARTMVASITIVATSSMVAVMVIRRRNGHRRRNGWIPFGEE 148
BLAST of IVF0007506 vs. NCBI nr
Match: KAA0059740.1 (auxin response factor 11-like [Cucumis melo var. makuwa]) HSP 1 Score: 80.5 bits (197), Expect = 4.65e-17 Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 Query: 1 MVAASKLVAASTMVASITIVATSTMVAAMVIRRRNGHQIRNGWIPFGEE 49 MVAASKLVAA TMVASITIVATS+MVA MVIRRRNGH+ RNGWIPFGEE Sbjct: 100 MVAASKLVAARTMVASITIVATSSMVAVMVIRRRNGHRRRNGWIPFGEE 148
BLAST of IVF0007506 vs. NCBI nr
Match: TYK09454.1 (auxin response factor 18 isoform X2 [Cucumis melo var. makuwa]) HSP 1 Score: 80.5 bits (197), Expect = 4.65e-17 Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 0 Query: 1 MVAASKLVAASTMVASITIVATSTMVAAMVIRRRNGHQIRNGWIPFGEE 49 MVAASKLVAA TMVASITIVATS+MVA MVIRRRNGH+ RNGWIPFGEE Sbjct: 100 MVAASKLVAARTMVASITIVATSSMVAVMVIRRRNGHRRRNGWIPFGEE 148
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UX74 | 4.7e-12 | 89.80 | Auxin response factor 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
A0A5D3CE34 | 4.7e-12 | 89.80 | Auxin response factor 18 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
Match Name | E-value | Identity | Description | |
KAA0059740.1 | 4.65e-17 | 89.80 | auxin response factor 11-like [Cucumis melo var. makuwa] | [more] |
TYK09454.1 | 4.65e-17 | 89.80 | auxin response factor 18 isoform X2 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016021 |
integral component of membrane |
|