IVF0007452 (gene) Melon (IVF77) v1

Overview


Name	IVF0007452
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Collagen triple helix repeat protein
Location	chr05: 21129250 .. 21129441 (+)
RNA-Seq Expression	IVF0007452
Synteny	IVF0007452

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCTGCGAAGAGGAAGAGTCAAACGAAAACTATGGATCCAACGAAGAGGAATAATCAGGCAAAAACTATGGATCTGACGAAGAGGAACAATCCAACGAAAAGGAAGAGTCTGGGTTGTATAGGAAAAGAGGAAGAGGATGATTATTTGATGAAGATGATGGAGATGAGAGGAAAAGAAAACCAATAA

mRNA sequence

ATGGATGCTGCGAAGAGGAAGAGTCAAACGAAAACTATGGATCCAACGAAGAGGAATAATCAGGCAAAAACTATGGATCTGACGAAGAGGAACAATCCAACGAAAAGGAAGAGTCTGGGTTGTATAGGAAAAGAGGAAGAGGATGATTATTTGATGAAGATGATGGAGATGAGAGGAAAAGAAAACCAATAA

Coding sequence (CDS)

ATGGATGCTGCGAAGAGGAAGAGTCAAACGAAAACTATGGATCCAACGAAGAGGAATAATCAGGCAAAAACTATGGATCTGACGAAGAGGAACAATCCAACGAAAAGGAAGAGTCTGGGTTGTATAGGAAAAGAGGAAGAGGATGATTATTTGATGAAGATGATGGAGATGAGAGGAAAAGAAAACCAATAA

Protein sequence

MDAAKRKSQTKTMDPTKRNNQAKTMDLTKRNNPTKRKSLGCIGKEEEDDYLMKMMEMRGKENQ

Homology

[Close]

BLAST of IVF0007452 vs. ExPASy TrEMBL
Match: A0A5A7UXT0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G00860 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-06
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 1  MDAAKRKSQTKTMDPTKRNNQAKTMD------LTKRNNPTKRKSLG--CIGK 45
          MD  KRKSQTKTMDPTKRNNQAKTMD      LTKRN+PTKR S G  C G+
Sbjct: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNSLTKRNSPTKRNSPGPDCRGR 52

[Close]

BLAST of IVF0007452 vs. ExPASy TrEMBL
Match: A0A5D3DFL7 (Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G001450 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-06
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 1  MDAAKRKSQTKTMDPTKRNNQAKTMDLTKRNNPT------KRKSLGCIGK 45
          MD AKRK QTKTMDPTKRNN+AKTM+ TKRN PT      KRKS GC G+
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGR 50

[Close]

BLAST of IVF0007452 vs. ExPASy TrEMBL
Match: A0A5A7UD84 (Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001290 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.7e-06
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 1  MDAAKRKSQTKTMDPTKRNNQAKTMD------LTKRNNPTKRKSLGCIGK 45
          MD AKRK QTKTMDPTKRNN+AKTM+       TKRN P KRKS GC G+
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRSTPTKRNTPAKRKSPGCRGR 50

[Close]

BLAST of IVF0007452 vs. NCBI nr
Match: TYK22248.1 (Collagen triple helix repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 2.71e-10
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 1  MDAAKRKSQTKTMDPTKRNNQAKTMDLTKRNNPTKR------KSLGCIGK 44
          MD AKRK QTKTMDPTKRNN+AKTM+ TKRN PTKR      KS GC G+
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGR 50

[Close]

BLAST of IVF0007452 vs. NCBI nr
Match: KAA0060038.1 (hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 2.84e-10
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 1  MDAAKRKSQTKTMDPTKRNNQAKTMD------LTKRNNPTKRKSLG--CIGK 44
          MD  KRKSQTKTMDPTKRNNQAKTMD      LTKRN+PTKR S G  C G+
Sbjct: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNSLTKRNSPTKRNSPGPDCRGR 52

[Close]

BLAST of IVF0007452 vs. NCBI nr
Match: KAA0051389.1 (Collagen triple helix repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.57e-09
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 1  MDAAKRKSQTKTMDPTKRNNQAKTMDLTKRNNPTKR------KSLGCIGK 44
          MD AKRK QTKTMDPTKRNN+AKTM+ TKR+ PTKR      KS GC G+
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRSTPTKRNTPAKRKSPGCRGR 50

[Close]

BLAST of IVF0007452 vs. NCBI nr
Match: TYK01567.1 (putative transposable element-related protein [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 1.68e-05
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 13 MDPTKRNNQAKTMDLTKRNNPTKRKSLGCIGKEEEDDYLMKM 54
          MDPTKRNNQAKTMD TKRN+  KRKSLGC     EDD   K+
Sbjct: 1  MDPTKRNNQAKTMDPTKRNSLVKRKSLGC----REDDERKKI 38

The following BLAST results are available for this feature:

BLAST of IVF0007452 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0007452 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UXT0	2.3e-06	71.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DFL7	2.3e-06	70.00	Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7UD84	8.7e-06	68.00	Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of IVF0007452 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22248.1	2.71e-10	70.00	Collagen triple helix repeat protein [Cucumis melo var. makuwa]	[more]
KAA0060038.1	2.84e-10	71.15	hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa]	[more]
KAA0051389.1	1.57e-09	68.00	Collagen triple helix repeat protein [Cucumis melo var. makuwa]	[more]
TYK01567.1	1.68e-05	69.05	putative transposable element-related protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0007452 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007452.1	IVF0007452.1	mRNA