IVF0007209 (gene) Melon (IVF77) v1

Overview


Name	IVF0007209
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like
Location	chr01: 926579 .. 931206 (+)
RNA-Seq Expression	IVF0007209
Synteny	IVF0007209

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACAATTGAGTTTATAACATCACATATTATATTTTAAATTGTTATGTTCACTTAATACAGTTTTGCACAAAATATATATATTAAAAGAATTCGAGTAAATTGTTAATGCGAATTTATGTAAATGTAAATTCTAAAACTCTTTCATCCTCCAGAAGAACAAACAAAATCACCTGAGCCCGTAAGGCGTAAACTACTCTTTCTTCTTCTTCAACAGCTAACTATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTTTCCATTCCTCAATCTCAACCGCCATTTCCAACTTCTCGAACCTCGCTTCTTTCCCATCCCTTCCAAATTTCTTATACGCTCCTCCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGTCCATTTTGATTTCTCTTCCCATCTATTCACCTTTTTTTCCTGTGTTTTTGTTCTTAGTTTGCTCAATTAACTTCCAGGGAGTTGATAATTTTGTGGACGAGCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACGATGAGGAAGAGGATAGAAGTTTGGATCTTTTGGTTCGTTTTGTTGAGAATGTTTTTAGGAAATCCTCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCAATCCATCCCTACTAAACTGGTAAAGTTTATTCAGCTATGAGCTTAATCGTTGATTTTTTTTTCTTCCTGTTTTGTTGTTGGTTCATTGTGTATCAGTACTTGTTTTTCCAGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTAAATGCTTCGAAATTTAGCCATTTTTAATGCTTTTCCTTTGGTATTTCCATATGGAATTGTTTCCTCAGCAATATAGGTAGTTGTAAGCTTTTCATTGCAAAGGAGAAATTTGTGTTCGAAATTTAACGATAATATTGGAGATGGAATTATTATGACGCTTTGCTTGTTATTTTGCTTGTGCATGGCAAACGTATCAACCGAAAAAAAAAACAAGAAAAAACGTGAAAAGAAGACAAAAAGAAGAGATGTCTTAGGCTTCTCTTTGTTGGAAGAAGCTATTCAATGGCCTCCTGTTTAGTCATACTTTCTGAAAGTCAGCAAATTCAATTGGTTTAATGTTTAGAGCCTTAAGAGTTTTTTTTCCCATCTTGAAGTTCCCTCCACAAGATATTTGTAATGGTTGCTTGTTGATAAGAGTCTCTTTGTAACTCCTTTAGTATTGCTGGTGCCATGGGCTAACTCCAACTCCAACTCCAATATATGTTCTGATACGAATCCACCTCATAAACGATCTCCATATCTTATGAACAGTTGTGGTGTATTTAGTTGCTTAATTAGTTGTTAATTACCTACTACCTACTGAACTGGATTTTAGACTCTTTGACTTGTTGAAAAGGTGATAGGTCACCTTTGACTTGTTGTAGTACAAATAATAGTTGTTATTATTTATATTCCAGAATGTTAATAAAAAATACCCATATTTCTTGTTTCTGTGTTAATTCTCCAAGAACACACCAAGTTGTGAACCGATATTGTCATTAGAAAACTTTTTGAAACTGGCAAGTATCTGTCAATTAACGAAATATTCAGATTGATGGGTGCATTTACAGGGTTCTAGTATGAATCTTGATATGGTTAAAAGTGAACTCAGGGACCGTTAGGTTCACTAAATGAAGTTAATAAGCCTGAAGTTACTATGTTTGAGTTAGTAATATTATGTCTCGGCTGTGGAATTGTAAGATGGAGTTCTTTGAAAAATGTGAAAAGCAGAGAAAGAGGGAAAGGTAGAGTTACTTGCAGTGTTTTGAAAGGCGCACTTGGGGACACGTCTAGGAACTAGGCGCAACATTGGCCCCTAGGCGAGGCGCATTGAGGATTAGCGCACCTCTTTGAGCTTTTTTTTTGACAAATCCCTTAAAACACAAATTTGGCTGCCATTTAATATAAAATATAATATATTTATTTATTTTTGACCTAATTTGAAATAAAGCATCATTATACAATTTATACCTATGGCTAATATTGATCTAAAGTACAAGCTGAAGCGGCAGATTTCTTATATATCTTGGTGTTGGATGACTAATATTTAACTCATATCTTTTTTGTACAAATCTCATTTCTATCCATCTATATTGTGGTTGGGTAAATAAACATGTATATAGTATATGTATGTATATATATTTTATATTTCTTATATATAGTGCACCTCACAAAAAAAATCGTGCCTTTTCTTCCACCTTGCGCCTAGGCTTCAGAGGGCCATTGTAACTTAGTGCGTCTTGGGCATTTTAAAACACTGGTTAGTCGATAAATGTGAACAATAGAGATAAAGAGAGAGATGGAGTTTCTTGATAATCATAAAAATTAGAAAAAGAGGGAAGGGTGAAACTACTCGATAAATGTGCATACTTCATTGAGTTGAGTTGTTTAACCAAACAAATCCTAAATCCTAAATGTCAGTTAGCCTTGTTTAGTTTTTATCAGTAGTGAAAGTACCAGTCTATTGATGTGAATCAACCGAGTTTGCTTCTGCTTGTAGACAGTTGACGCTAAAATCTCTGCTGGCAGGATGTGAGTAAGAAAATTCATGCCTATATGACTGGAATTTGAAGGAAATCCAACAATATGCATCAGAGCCACTTGCCAGTAGTGATCTTAGAGATACATTAGCTTTCTTTGGGGTTTTATTTACCAACGCACACAAATACTTGTGTTTCTAGAAAATGACAAAACTATTTGACTTAAAACCGCTAGTCTGTTGATGTAGGTTGATTATTGAGTTTACTAGTGGTTGTAGACAGTTTGTCTGTTGGTGTGAATTGACTATTGAGTTTCCTGGTGTTTATAGACAGTAGGTTCCTCGGGAGACTGTTCTGAAAGGGTCTGGTATGGGAAGAATAAAAAATTTCATACAAGCTGAAACTAATTAAGACTGTAATTTCTTGAGATAGATTTTTATTGAAAAACAAATTTGTCAATGCATTCTTGTTGAAAAGGTTCTCTTTGCCAGTTTTGACTATAATGGTGTTGTGTAAGTAGCTGGGGGTTTGACATAGAGTGGAATTTAAATGTTTTCTTTTTTCCTTTTCTATTCTTTTCTCCTTTCTTCGTTCATCGAGAGGGGTTGGTCAAATAAGAAATATTGAATGCTTGTTTTCTTTTGGATTTTCTTCCCTGTGGTTTTTTTGGTTAATCTCTCATAGGGTGTTATTTATTTTATTATTTATTATTTTTAAGTTGTTGACCTTTATTTTTCTACATGACATCACTCTCTTCTGTTCTACTTTCAATTTTCTCAACAACGCCATCCTTCCATTAAAAGGAAAAGAAATAATTCTCCTTTTATGAAAATCATACCTAATTTCCAAAGTTTTCTCCTTCAGTACTACTGTATTAGGACCATTTTCATTAACTCCCTTGGCTATATGAAATCTTAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTAATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGAACAATTCGATGATGATCAGCACCATGCGTGGACTGGTGCACAACCTGCATCCTGAATGCTTCAAGCACTTAACTACTTACAAGCCACAAGGTTAGTGAACTACCCCCCCCCCCCCCCCCCCCACCCCGCAAAAAAAAAAAAAAAGGGTATAGCTTAAATAAATATGGTTTGATCCTATTTTGGTTCTTCTGCATTCATGCTTATCTCATTTTGATCTTCAAATTCTTGTACTCTTAATTTTGTATATAATAGTGTTTTAGTTCTCGCCAACACTTTCCATAAATAATTCTATTTTGATTTTTTAATTCATCTGACAAGTAGATAACCGAATGAATAAGTGTTTGAAAAGCTCCCAATCATGTTATGCGGTTTGTTTCTAAATGAAGTTGGATTTTTGTTAAATGATTTATGAATAAAAGTGGCGAGGACTAAAATAACTATCTATACAAAATTTAGGAACTTAAGTAACTAAACGTTGTAAAGTTTATTGATCAAAATAAAAGCGTGAAGGCAGAAGTCTAAGTTTCAAAATAGAATCTAAACCAAATACAAACGCCACTGGAGCAGAAATGCTTCTACAAACTTGAAGTATAGTTTTGATTCTTTTGGTCTCGTAGCTCTCTCTATACTATTAAAGAAAGCAACACCTCTTTGCTTTTGTTACTTCTTTCAAGTCTTTAGGACATGATTGAAAATAGCAAAGGTAACCTCTAATGTAATATTATGAGAGAAATGTGGTATAGTATTTGGTTGTAATCTCAGTTTTATCTTCCACTATTTATAGCTTCCTCATTTCATTCTTCGTTTCCCACTCTTTGCACTTTTCTCATCTCCTTTATTATTCTCTCATCTTTGCACACCATCAATGTAGTGAAGAATCTCCTACCTTTCTTATTTATTGTTTCAAAATCGATAGTACATTAGTTTACTC

mRNA sequence

ATACAATTGAGTTTATAACATCACATATTATATTTTAAATTGTTATGTTCACTTAATACAGTTTTGCACAAAATATATATATTAAAAGAATTCGAGTAAATTGTTAATGCGAATTTATGTAAATGTAAATTCTAAAACTCTTTCATCCTCCAGAAGAACAAACAAAATCACCTGAGCCCGTAAGGCGTAAACTACTCTTTCTTCTTCTTCAACAGCTAACTATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTTTCCATTCCTCAATCTCAACCGCCATTTCCAACTTCTCGAACCTCGCTTCTTTCCCATCCCTTCCAAATTTCTTATACGCTCCTCCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATAATTTTGTGGACGAGCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACGATGAGGAAGAGGATAGAAGTTTGGATCTTTTGGTTCGTTTTGTTGAGAATGTTTTTAGGAAATCCTCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCAATCCATCCCTACTAAACTGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTAATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGAACAATTCGATGATGATCAGCACCATGCGTGGACTGGTGCACAACCTGCATCCTGAATGCTTCAAGCACTTAACTACTTACAAGCCACAAGGTTAGTGAACTACCCCCCCCCCCCCCCCCCCCACCCCGCAAAAAAAAAAAAAAAGGGTATAGCTTAAATAAATATGGTTTGATCCTATTTTGGTTCTTCTGCATTCATGCTTATCTCATTTTGATCTTCAAATTCTTGTACTCTTAATTTTGTATATAATAGTGTTTTAGTTCTCGCCAACACTTTCCATAAATAATTCTATTTTGATTTTTTAATTCATCTGACAAGTAGATAACCGAATGAATAAGTGTTTGAAAAGCTCCCAATCATGTTATGCGGTTTGTTTCTAAATGAAGTTGGATTTTTGTTAAATGATTTATGAATAAAAGTGGCGAGGACTAAAATAACTATCTATACAAAATTTAGGAACTTAAGTAACTAAACGTTGTAAAGTTTATTGATCAAAATAAAAGCGTGAAGGCAGAAGTCTAAGTTTCAAAATAGAATCTAAACCAAATACAAACGCCACTGGAGCAGAAATGCTTCTACAAACTTGAAGTATAGTTTTGATTCTTTTGGTCTCGTAGCTCTCTCTATACTATTAAAGAAAGCAACACCTCTTTGCTTTTGTTACTTCTTTCAAGTCTTTAGGACATGATTGAAAATAGCAAAGGTAACCTCTAATGTAATATTATGAGAGAAATGTGGTATAGTATTTGGTTGTAATCTCAGTTTTATCTTCCACTATTTATAGCTTCCTCATTTCATTCTTCGTTTCCCACTCTTTGCACTTTTCTCATCTCCTTTATTATTCTCTCATCTTTGCACACCATCAATGTAGTGAAGAATCTCCTACCTTTCTTATTTATTGTTTCAAAATCGATAGTACATTAGTTTACTC

Coding sequence (CDS)

ATGTCCTTACCTGCCGTTCTTTCACCGCCGTCCCTTTTTTCCATTCCTCAATCTCAACCGCCATTTCCAACTTCTCGAACCTCGCTTCTTTCCCATCCCTTCCAAATTTCTTATACGCTCCTCCGGGCTACCAGAAGAACCTCCAATTTCTCTCAGGGAGTTGATAATTTTGTGGACGAGCGGCGTAATTGGAACCGCTCCGACTTCGACTTAATCGGTGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACGATGAGGAAGAGGATAGAAGTTTGGATCTTTTGGTTCGTTTTGTTGAGAATGTTTTTAGGAAATCCTCGAGGCGAGCTCGGAAGGCTGTGAGATCGGTTCTTCCTCAATCCATCCCTACTAAACTGGTGGCATTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTTTTGAAAGCATTTCTTGAGGTGATATGCACACTTGGAACTGCAGTGTTTGTGAGCATACTAATCATTCGTGGAGTGTGGATTGGCATTTTATATCTGCAAGATACCCGCAGCCACAGACTCGAACAATTCGATGATGATCAGCACCATGCGTGGACTGGTGCACAACCTGCATCCTGA

Protein sequence

MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDERRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTRSHRLEQFDDDQHHAWTGAQPAS

Homology

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BLAST of IVF0007209 vs. ExPASy Swiss-Prot
Match: F4I3V6 (Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.0e-14
Identity = 57/152 (37.50%), Postives = 90/152 (59.21%), Query Frame = 0


Query: 33  PFQISYTLLRATRRTSNFSQGVDNFVDERRNWNRSDFDLIGGEEE-----EEEEEEEDDD 92
           PF  +   LR  RR    ++ + +     R    SD    GG +      +++   +DDD
Sbjct: 31  PFSSNSIFLR--RRFRRLNRSLASSSSHSRRRYESDDRFFGGGDNYDVVPDDDGFSDDDD 90

Query: 93  EEEDR--SLDLLVRFVENVFRKSSRRARKAVRSVLPQSIPTKLVAFSVNGVLMLAFLWVL 152
           EE++R  S+DLL+RF+ ++F+K S+R +KA R +LP ++  +LV+F+V+G+L+L  L + 
Sbjct: 91  EEDERESSVDLLIRFLRSMFKKVSKRTKKASRRILPAAMSPRLVSFAVDGILLLGSLSIT 150

Query: 153 KAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 178
           +AFLEVIC LG  VF  IL+IR  W    + Q
Sbjct: 151 RAFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

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BLAST of IVF0007209 vs. ExPASy TrEMBL
Match: A0A1S3C0Q8 (uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.6e-101
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120

Query: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLEQFDDDQHHAWTGAQPAS 203
           SHRLEQFDDDQHHAWTGAQPAS
Sbjct: 181 SHRLEQFDDDQHHAWTGAQPAS 202

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BLAST of IVF0007209 vs. ExPASy TrEMBL
Match: A0A0A0K2W4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.6e-93
Identity = 188/202 (93.07%), Postives = 194/202 (96.04%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSLPAVLSPPSLFSIPQSQ PF TS TSLLSHP  ISYTLLRATRRTSNFSQGVDNFVD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEEEE+ED+++EEDRSLDLLVRFVEN+FRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120

Query: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           P SIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLEQFDDDQHHAWTGAQPAS 203
           SHRL Q DDDQHHAWTGAQPAS
Sbjct: 181 SHRLGQLDDDQHHAWTGAQPAS 202

[Close]

BLAST of IVF0007209 vs. ExPASy TrEMBL
Match: A0A6J1JL13 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111486160 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.3e-83
Identity = 171/205 (83.41%), Postives = 188/205 (91.71%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSLPA LSPPSL+SIP SQPP PTSRTS+LSH  QIS+TLLRA+RRTSNFSQGVD+ VD+
Sbjct: 1   MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNR---SDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVR 120
           RRNWNR   SDFD+IGGE++E++E+EE  +EEEDRSLDLLVRFVENVFRK S+RARKAVR
Sbjct: 61  RRNWNRSISSDFDIIGGEDDEDDEDEE--NEEEDRSLDLLVRFVENVFRKVSKRARKAVR 120

Query: 121 SVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLPQSIPTKLV FSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 180

Query: 181 DTRSHRLEQFDDDQHHAWTGAQPAS 203
           D RSHR ++ DDDQHHAWTGAQPAS
Sbjct: 181 DIRSHRFDRLDDDQHHAWTGAQPAS 203

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BLAST of IVF0007209 vs. ExPASy TrEMBL
Match: A0A6J1GJK6 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454943 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.3e-82
Identity = 175/205 (85.37%), Postives = 185/205 (90.24%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSL A  SPPSLF++PQ QPPFPTSRT LLSHPFQ+S+ LLRA+RR SNFSQGVD+ VD+
Sbjct: 1   MSLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDD 60

Query: 61  RRNWN---RSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVR 120
           RRNWN    SDFDLIGG  EEEEEEEED+DEEEDRSLDLLV+FVENVFRK SRRARKAVR
Sbjct: 61  RRNWNGSIGSDFDLIGG--EEEEEEEEDEDEEEDRSLDLLVQFVENVFRKVSRRARKAVR 120

Query: 121 SVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLPQSIPTKLV F VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ
Sbjct: 121 SVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180

Query: 181 DTRSHRLEQFDDDQHHAWTGAQPAS 203
           D RSHRL+Q DDDQ HAWTGAQPAS
Sbjct: 181 DIRSHRLDQLDDDQPHAWTGAQPAS 203

[Close]

BLAST of IVF0007209 vs. ExPASy TrEMBL
Match: A0A6J1D3L5 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Momordica charantia OX=3673 GN=LOC111017292 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.4e-81
Identity = 172/207 (83.09%), Postives = 188/207 (90.82%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQ--SQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFV 60
           MS PA LSPPSLFSIPQ   QP F +SRTSLLSHPFQIS+TLLRA+RR SNFSQGVDN V
Sbjct: 1   MSFPAALSPPSLFSIPQYHFQPLFSSSRTSLLSHPFQISHTLLRASRRPSNFSQGVDNLV 60

Query: 61  DERRNWNR---SDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKA 120
           D+RRNWNR   SDFD++GGE++EE+EE+E +DEEEDRSLDLLVRFVENVFRK S+RARKA
Sbjct: 61  DDRRNWNRPISSDFDIVGGEDDEEDEEDE-EDEEEDRSLDLLVRFVENVFRKVSKRARKA 120

Query: 121 VRSVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILY 180
           VRSVLPQSIPTKLV FSVNGVLMLAFLWVLKAFL+VICTLGTAVFVSILIIRGVW GILY
Sbjct: 121 VRSVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLQVICTLGTAVFVSILIIRGVWTGILY 180

Query: 181 LQDTRSHRLEQFDDDQHHAWTGAQPAS 203
           LQD RSHR +Q D++QHHAWTGAQPAS
Sbjct: 181 LQDIRSHRFDQLDNEQHHAWTGAQPAS 206

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BLAST of IVF0007209 vs. NCBI nr
Match: XP_008455053.1 (PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo])

HSP 1 Score: 377 bits (968), Expect = 2.12e-131
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE
Sbjct: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60

Query: 61  RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120

Query: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLEQFDDDQHHAWTGAQPAS 202
           SHRLEQFDDDQHHAWTGAQPAS
Sbjct: 181 SHRLEQFDDDQHHAWTGAQPAS 202

[Close]

BLAST of IVF0007209 vs. NCBI nr
Match: XP_004136931.2 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Cucumis sativus] >KGN43838.1 hypothetical protein Csa_017135 [Cucumis sativus])

HSP 1 Score: 349 bits (895), Expect = 2.84e-120
Identity = 188/202 (93.07%), Postives = 194/202 (96.04%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSLPAVLSPPSLFSIPQSQ PF TS TSLLSHP  ISYTLLRATRRTSNFSQGVDNFVD+
Sbjct: 1   MSLPAVLSPPSLFSIPQSQLPFSTSPTSLLSHPIHISYTLLRATRRTSNFSQGVDNFVDD 60

Query: 61  RRNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVL 120
           RRNWNRSDFDLIGGEEEEEEEE+ED+++EEDRSLDLLVRFVEN+FRKSSRRARKAVRSVL
Sbjct: 61  RRNWNRSDFDLIGGEEEEEEEEDEDEEDEEDRSLDLLVRFVENIFRKSSRRARKAVRSVL 120

Query: 121 PQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180
           P SIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR
Sbjct: 121 PPSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTR 180

Query: 181 SHRLEQFDDDQHHAWTGAQPAS 202
           SHRL Q DDDQHHAWTGAQPAS
Sbjct: 181 SHRLGQLDDDQHHAWTGAQPAS 202

[Close]

BLAST of IVF0007209 vs. NCBI nr
Match: XP_038877542.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Benincasa hispida])

HSP 1 Score: 332 bits (851), Expect = 3.97e-113
Identity = 181/205 (88.29%), Postives = 192/205 (93.66%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSL A LSPPSLFSIPQSQPPFPTSRTSLLSHPFQIS+TLLRA+RRTSNFSQGVDN VD+
Sbjct: 1   MSLSAALSPPSLFSIPQSQPPFPTSRTSLLSHPFQISHTLLRASRRTSNFSQGVDNLVDD 60

Query: 61  RRNWNRS---DFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVR 120
           RRNWNRS   DFDLIGGEEEE++++E D+DEEEDRSLDLLVRFVENVFRK SRRARKAVR
Sbjct: 61  RRNWNRSIGSDFDLIGGEEEEDDDDE-DEDEEEDRSLDLLVRFVENVFRKVSRRARKAVR 120

Query: 121 SVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLPQSIPTKLV FSVNGVLMLAFLWVLKAFLEVICTLGTAVF+SILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWVLKAFLEVICTLGTAVFLSILIIRGVWTGILYLQ 180

Query: 181 DTRSHRLEQFDDDQHHAWTGAQPAS 202
           DTR+HRL+Q DDDQH AWTGAQP S
Sbjct: 181 DTRTHRLDQLDDDQHRAWTGAQPVS 204

[Close]

BLAST of IVF0007209 vs. NCBI nr
Match: XP_022988955.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima])

HSP 1 Score: 317 bits (811), Expect = 1.85e-107
Identity = 171/205 (83.41%), Postives = 188/205 (91.71%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSLPA LSPPSL+SIP SQPP PTSRTS+LSH  QIS+TLLRA+RRTSNFSQGVD+ VD+
Sbjct: 1   MSLPAALSPPSLYSIPYSQPPLPTSRTSILSHSLQISHTLLRASRRTSNFSQGVDHLVDD 60

Query: 61  RRNWNRS---DFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVR 120
           RRNWNRS   DFD+IGGE++E++E+EE+  EEEDRSLDLLVRFVENVFRK S+RARKAVR
Sbjct: 61  RRNWNRSISSDFDIIGGEDDEDDEDEEN--EEEDRSLDLLVRFVENVFRKVSKRARKAVR 120

Query: 121 SVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLPQSIPTKLV FSVNGVLMLAFLW+LKAFLEVICTLGTAVFVSILIIRGVW GILYLQ
Sbjct: 121 SVLPQSIPTKLVGFSVNGVLMLAFLWILKAFLEVICTLGTAVFVSILIIRGVWTGILYLQ 180

Query: 181 DTRSHRLEQFDDDQHHAWTGAQPAS 202
           D RSHR ++ DDDQHHAWTGAQPAS
Sbjct: 181 DIRSHRFDRLDDDQHHAWTGAQPAS 203

[Close]

BLAST of IVF0007209 vs. NCBI nr
Match: XP_022952196.1 (protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata] >XP_022952197.1 protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata])

HSP 1 Score: 314 bits (805), Expect = 1.52e-106
Identity = 175/205 (85.37%), Postives = 185/205 (90.24%), Query Frame = 0


Query: 1   MSLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDE 60
           MSL A  SPPSLF++PQ QPPFPTSRT LLSHPFQ+S+ LLRA+RR SNFSQGVD+ VD+
Sbjct: 1   MSLLAARSPPSLFAVPQYQPPFPTSRTWLLSHPFQVSHALLRASRRASNFSQGVDDPVDD 60

Query: 61  RRNWNRS---DFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVR 120
           RRNWN S   DFDLIGGEEEEEEEE  D+DEEEDRSLDLLV+FVENVFRK SRRARKAVR
Sbjct: 61  RRNWNGSIGSDFDLIGGEEEEEEEE--DEDEEEDRSLDLLVQFVENVFRKVSRRARKAVR 120

Query: 121 SVLPQSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180
           SVLPQSIPTKLV F VNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ
Sbjct: 121 SVLPQSIPTKLVGFCVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 180

Query: 181 DTRSHRLEQFDDDQHHAWTGAQPAS 202
           D RSHRL+Q DDDQ HAWTGAQPAS
Sbjct: 181 DIRSHRLDQLDDDQPHAWTGAQPAS 203

[Close]

BLAST of IVF0007209 vs. TAIR 10
Match: AT4G33780.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: short hypocotyl in white light1 (TAIR:AT1G69935.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-45
Identity = 109/201 (54.23%), Postives = 140/201 (69.65%), Query Frame = 0


Query: 2   SLPAVLSPPSLFSIPQSQPPFPTSRTSLLSHPFQISYTLLRATRRTSNFSQGVDNFVDER 61
           S+  + SP S F        F  +RT +   P+        A+RR+ +F  G D+F D+ 
Sbjct: 13  SVALLRSPLSFFIFTPKTLIF--TRTRISGFPY-------LASRRSRDFINGRDDFADDT 72

Query: 62  RNWNRSDFDLIGGEEEEEEEEEEDDDEEEDRSLDLLVRFVENVFRKSSRRARKAVRSVLP 121
           R+WNR      G +E+ + EE++DD EEEDRSLDLL+RFVENVFRK S+RARKAVRS+LP
Sbjct: 73  RSWNRKIKPEYGFDEDYDGEEDDDDHEEEDRSLDLLLRFVENVFRKISKRARKAVRSILP 132

Query: 122 QSIPTKLVAFSVNGVLMLAFLWVLKAFLEVICTLGTAVFVSILIIRGVWIGILYLQDTRS 181
            SI TKLV FSVNGVL+LAFLW+LKAFLEV CTLGT VF SIL+IRG+W G+ Y+Q++R+
Sbjct: 133 VSISTKLVGFSVNGVLILAFLWILKAFLEVACTLGTIVFTSILLIRGLWAGVAYMQESRN 192

Query: 182 HRLEQFDDDQHHAWTGAQPAS 203
           +R+ +  DD   AW G QP S
Sbjct: 193 NRINELADDP-RAWNGMQPVS 203

[Close]

BLAST of IVF0007209 vs. TAIR 10
Match: AT1G69935.1 (short hypocotyl in white light1 )

HSP 1 Score: 79.0 bits (193), Expect = 5.0e-15
Identity = 57/152 (37.50%), Postives = 90/152 (59.21%), Query Frame = 0


Query: 33  PFQISYTLLRATRRTSNFSQGVDNFVDERRNWNRSDFDLIGGEEE-----EEEEEEEDDD 92
           PF  +   LR  RR    ++ + +     R    SD    GG +      +++   +DDD
Sbjct: 31  PFSSNSIFLR--RRFRRLNRSLASSSSHSRRRYESDDRFFGGGDNYDVVPDDDGFSDDDD 90

Query: 93  EEEDR--SLDLLVRFVENVFRKSSRRARKAVRSVLPQSIPTKLVAFSVNGVLMLAFLWVL 152
           EE++R  S+DLL+RF+ ++F+K S+R +KA R +LP ++  +LV+F+V+G+L+L  L + 
Sbjct: 91  EEDERESSVDLLIRFLRSMFKKVSKRTKKASRRILPAAMSPRLVSFAVDGILLLGSLSIT 150

Query: 153 KAFLEVICTLGTAVFVSILIIRGVWIGILYLQ 178
           +AFLEVIC LG  VF  IL+IR  W    + Q
Sbjct: 151 RAFLEVICNLGGTVFTVILLIRLFWAAASFFQ 180

The following BLAST results are available for this feature:

BLAST of IVF0007209 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I3V6	7.0e-14	37.50	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Arabidopsis thaliana OX=3702 GN=SHW1...	[more]

BLAST of IVF0007209 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C0Q8	1.6e-101	100.00	uncharacterized protein LOC103495323 OS=Cucumis melo OX=3656 GN=LOC103495323 PE=...	[more]
A0A0A0K2W4	4.6e-93	93.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G070780 PE=4 SV=1	[more]
A0A6J1JL13	3.3e-83	83.41	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1GJK6	1.3e-82	85.37	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1D3L5	1.4e-81	83.09	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of IVF0007209 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455053.1	2.12e-131	100.00	PREDICTED: uncharacterized protein LOC103495323 [Cucumis melo]	[more]
XP_004136931.2	2.84e-120	93.07	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Cucumis sativus] >KGN43838.1 hypotheti...	[more]
XP_038877542.1	3.97e-113	88.29	protein SHORT HYPOCOTYL IN WHITE LIGHT 1 [Benincasa hispida]	[more]
XP_022988955.1	1.85e-107	83.41	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita maxima]	[more]
XP_022952196.1	1.52e-106	85.37	protein SHORT HYPOCOTYL IN WHITE LIGHT 1-like [Cucurbita moschata] >XP_022952197...	[more]

BLAST of IVF0007209 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33780.1	1.6e-45	54.23	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G69935.1	5.0e-15	37.50	short hypocotyl in white light1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91
None	No IPR available	PANTHER	PTHR35474:SF1	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 21..202
IPR039324	Protein SHORT HYPOCOTYL IN WHITE LIGHT 1	PANTHER	PTHR35474	ATP PHOSPHORIBOSYLTRANSFERASE REGULATORY SUBUNIT	coord: 21..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0007209.2	IVF0007209.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010100	negative regulation of photomorphogenesis
biological_process	GO:0009787	regulation of abscisic acid-activated signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	glycosyltransferase activity