Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCATCTGGTATACATTTAAATATTGTATTGTTGTTTTTAGTGAAAATTTATTTTCAATGATTTCTAATTCATTTTAATATTTTACAGAGATTGAACAATATTAGACTTCAGAATGTTGCAGATGATCCACAGCAGGTTCTAAATATATGCAACGATAACGAACAGTACATAGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCTAGTTCAAAGGAGACGTCCTCTAGTCCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAAACACAGACACAAAGAGAGCATAGTTACGTTAGTCCAGTAATGATGATGCCAACGTTTGGAACGACATATTATGATTCAGGAATCGATCAATCGTCAGACTTTGGAAGAGGATATTACAATTTAGAGGCAGGTCCATCTTCAACGGACTTTAGGCAACAATACTTTGATTTAGAGAGCGATCCATCGTCTTCATACATGCATGGTCACGAGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACAAAGTGCTTGCAGCGGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGTGGTACCCGAGTAA
mRNA sequence
ATGAGTCATCTGAGATTGAACAATATTAGACTTCAGAATGTTGCAGATGATCCACAGCAGGTTCTAAATATATGCAACGATAACGAACAGTACATAGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCTAGTTCAAAGGAGACGTCCTCTAGTCCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAAACACAGACACAAAGAGAGCATAGTTACGTTAGTCCAGTAATGATGATGCCAACGTTTGGAACGACATATTATGATTCAGGAATCGATCAATCGTCAGACTTTGGAAGAGGATATTACAATTTAGAGGCAGGTCCATCTTCAACGGACTTTAGGCAACAATACTTTGATTTAGAGAGCGATCCATCGTCTTCATACATGCATGGTCACGAGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACAAAGTGCTTGCAGCGGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGTGGTACCCGAGTAA
Coding sequence (CDS)
ATGAGTCATCTGAGATTGAACAATATTAGACTTCAGAATGTTGCAGATGATCCACAGCAGGTTCTAAATATATGCAACGATAACGAACAGTACATAGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCTAGTTCAAAGGAGACGTCCTCTAGTCCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAAACACAGACACAAAGAGAGCATAGTTACGTTAGTCCAGTAATGATGATGCCAACGTTTGGAACGACATATTATGATTCAGGAATCGATCAATCGTCAGACTTTGGAAGAGGATATTACAATTTAGAGGCAGGTCCATCTTCAACGGACTTTAGGCAACAATACTTTGATTTAGAGAGCGATCCATCGTCTTCATACATGCATGGTCACGAGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACAAAGTGCTTGCAGCGGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGTGGTACCCGAGTAA
Protein sequence
MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAGPSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
Homology
BLAST of IVF0007030 vs. ExPASy TrEMBL
Match:
A0A5A7U9V2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00180 PE=4 SV=1)
HSP 1 Score: 354.0 bits (907), Expect = 3.8e-94
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0
Query: 5 RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEV 64
RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEV
Sbjct: 129 RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEV 188
Query: 65 DQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAGPSST 124
DQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAGPSST
Sbjct: 189 DQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAGPSST 248
Query: 125 DFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE 182
DFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
Sbjct: 249 DFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE 305
BLAST of IVF0007030 vs. ExPASy TrEMBL
Match:
A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)
HSP 1 Score: 317.4 bits (812), Expect = 3.9e-83
Identity = 159/181 (87.85%), Postives = 166/181 (91.71%), Query Frame = 0
Query: 1 MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQ 60
MSHLR NN RL+N+ADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQE DQ
Sbjct: 789 MSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQ 848
Query: 61 LEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAG 120
LEEVDQH EEVPP+TQTQTQ EH+YVSPVMMMPTFG TYYDSG+ QSSDFGRGYYN EAG
Sbjct: 849 LEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAG 908
Query: 121 PSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVP 180
SSTDF QQY+DL SDPSSSYMHGH RGRGEHNEYLYYKV AAVPEQSDEQQQQENA VP
Sbjct: 909 QSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVP 968
Query: 181 E 182
E
Sbjct: 969 E 969
BLAST of IVF0007030 vs. ExPASy TrEMBL
Match:
A0A1S3BLK4 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)
HSP 1 Score: 317.4 bits (812), Expect = 3.9e-83
Identity = 159/181 (87.85%), Postives = 166/181 (91.71%), Query Frame = 0
Query: 1 MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQ 60
MSHLR NN RL+N+ADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQE DQ
Sbjct: 46 MSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQ 105
Query: 61 LEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAG 120
LEEVDQH EEVPP+TQTQTQ EH+YVSPVMMMPTFG TYYDSG+ QSSDFGRGYYN EAG
Sbjct: 106 LEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAG 165
Query: 121 PSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVP 180
SSTDF QQY+DL SDPSSSYMHGH RGRGEHNEYLYYKV AAVPEQSDEQQQQENA VP
Sbjct: 166 QSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVP 225
Query: 181 E 182
E
Sbjct: 226 E 226
BLAST of IVF0007030 vs. ExPASy TrEMBL
Match:
A0A1S4DWZ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)
HSP 1 Score: 317.4 bits (812), Expect = 3.9e-83
Identity = 159/181 (87.85%), Postives = 166/181 (91.71%), Query Frame = 0
Query: 1 MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQ 60
MSHLR NN RL+N+ADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQE DQ
Sbjct: 26 MSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQ 85
Query: 61 LEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAG 120
LEEVDQH EEVPP+TQTQTQ EH+YVSPVMMMPTFG TYYDSG+ QSSDFGRGYYN EAG
Sbjct: 86 LEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAG 145
Query: 121 PSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVP 180
SSTDF QQY+DL SDPSSSYMHGH RGRGEHNEYLYYKV AAVPEQSDEQQQQENA VP
Sbjct: 146 QSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVP 205
Query: 181 E 182
E
Sbjct: 206 E 206
BLAST of IVF0007030 vs. ExPASy TrEMBL
Match:
A0A5A7U5S8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00410 PE=4 SV=1)
HSP 1 Score: 312.8 bits (800), Expect = 9.6e-82
Identity = 157/177 (88.70%), Postives = 165/177 (93.22%), Query Frame = 0
Query: 5 RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEV 64
R NNIRL+NVADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQEPDQLEEV
Sbjct: 114 RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 173
Query: 65 DQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAGPSST 124
DQH EEVPP+TQTQTQ EH+YVSPVMMMPTFGTTYYDSG+ QSSDFGRGYYN EAG SST
Sbjct: 174 DQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSST 233
Query: 125 DFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE 182
DF QQY+DL SDPSSSYMH H RGRGEHNEYLYY+V AAVP+QSDEQQQQENAVVPE
Sbjct: 234 DFGQQYYDLGSDPSSSYMHDHGRGRGEHNEYLYYEVPAAVPKQSDEQQQQENAVVPE 290
BLAST of IVF0007030 vs. NCBI nr
Match:
KAA0050311.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK03528.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 355 bits (910), Expect = 2.29e-121
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0
Query: 5 RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEV 64
RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEV
Sbjct: 129 RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEV 188
Query: 65 DQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAGPSST 124
DQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAGPSST
Sbjct: 189 DQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAGPSST 248
Query: 125 DFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE 181
DFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE
Sbjct: 249 DFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE 305
BLAST of IVF0007030 vs. NCBI nr
Match:
XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])
HSP 1 Score: 318 bits (815), Expect = 8.12e-108
Identity = 159/181 (87.85%), Postives = 166/181 (91.71%), Query Frame = 0
Query: 1 MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQ 60
MSHLR NN RL+N+ADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQE DQ
Sbjct: 26 MSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQ 85
Query: 61 LEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAG 120
LEEVDQH EEVPP+TQTQTQ EH+YVSPVMMMPTFG TYYDSG+ QSSDFGRGYYN EAG
Sbjct: 86 LEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAG 145
Query: 121 PSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVP 180
SSTDF QQY+DL SDPSSSYMHGH RGRGEHNEYLYYKV AAVPEQSDEQQQQENA VP
Sbjct: 146 QSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVP 205
BLAST of IVF0007030 vs. NCBI nr
Match:
XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])
HSP 1 Score: 318 bits (815), Expect = 1.61e-107
Identity = 159/181 (87.85%), Postives = 166/181 (91.71%), Query Frame = 0
Query: 1 MSHLRLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQ 60
MSHLR NN RL+N+ADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQE DQ
Sbjct: 46 MSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQ 105
Query: 61 LEEVDQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAG 120
LEEVDQH EEVPP+TQTQTQ EH+YVSPVMMMPTFG TYYDSG+ QSSDFGRGYYN EAG
Sbjct: 106 LEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAG 165
Query: 121 PSSTDFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVP 180
SSTDF QQY+DL SDPSSSYMHGH RGRGEHNEYLYYKV AAVPEQSDEQQQQENA VP
Sbjct: 166 QSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVP 225
BLAST of IVF0007030 vs. NCBI nr
Match:
KAA0051233.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 313 bits (803), Expect = 9.25e-105
Identity = 157/177 (88.70%), Postives = 165/177 (93.22%), Query Frame = 0
Query: 5 RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEV 64
R NNIRL+NVADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQEPDQLEEV
Sbjct: 114 RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 173
Query: 65 DQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAGPSST 124
DQH EEVPP+TQTQTQ EH+YVSPVMMMPTFGTTYYDSG+ QSSDFGRGYYN EAG SST
Sbjct: 174 DQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSST 233
Query: 125 DFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVPE 181
DF QQY+DL SDPSSSYMH H RGRGEHNEYLYY+V AAVP+QSDEQQQQENAVVPE
Sbjct: 234 DFGQQYYDLGSDPSSSYMHDHGRGRGEHNEYLYYEVPAAVPKQSDEQQQQENAVVPE 290
BLAST of IVF0007030 vs. NCBI nr
Match:
TYK18891.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 310 bits (794), Expect = 2.15e-103
Identity = 155/176 (88.07%), Postives = 163/176 (92.61%), Query Frame = 0
Query: 5 RLNNIRLQNVADDPQQVLNICNDNEQYIENIHYMYDVPIVPALVQRRRPLVQEPDQLEEV 64
R NNIRL+NVADDPQQVLNICNDNEQY+ENIHYMYDVPIVPA VQRRRPLVQEPDQLEEV
Sbjct: 114 RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 173
Query: 65 DQHVEEVPPVTQTQTQREHSYVSPVMMMPTFGTTYYDSGIDQSSDFGRGYYNLEAGPSST 124
DQH EEVPP+TQTQTQ EH+YVSPVMMMPTFGTTYYDSG+ QSSDFGRGYYN EAG SST
Sbjct: 174 DQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSST 233
Query: 125 DFRQQYFDLESDPSSSYMHGHERGRGEHNEYLYYKVLAAVPEQSDEQQQQENAVVP 180
DF QQY+DL SDPSSSYMHGH RGRGEHNEYLYY+V AAVPEQS+E QQQENA VP
Sbjct: 234 DFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQENAAVP 289
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U9V2 | 3.8e-94 | 100.00 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A5D3DUI1 | 3.9e-83 | 87.85 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A1S3BLK4 | 3.9e-83 | 87.85 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A1S4DWZ9 | 3.9e-83 | 87.85 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX... | [more] |
A0A5A7U5S8 | 9.6e-82 | 88.70 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
Match Name | E-value | Identity | Description | |
KAA0050311.1 | 2.29e-121 | 100.00 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
XP_016900498.1 | 8.12e-108 | 87.85 | PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... | [more] |
XP_008449513.1 | 1.61e-107 | 87.85 | PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... | [more] |
KAA0051233.1 | 9.25e-105 | 88.70 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
TYK18891.1 | 2.15e-103 | 88.07 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
Match Name | E-value | Identity | Description | |