IVF0006941 (gene) Melon (IVF77) v1

Overview


Name	IVF0006941
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Phloem filament protein
Location	chr01: 1223729 .. 1224211 (-)
RNA-Seq Expression	IVF0006941
Synteny	IVF0006941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACTTGGTATTGGTGGAGGAATCAGTATCGGCCTTGGTATTCCTGGCATCAATATATCGATCGGCGGAGGCATCGGTATCAGGGGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGACTGAAATTAAGAGTGTGAACGATCCTGCTATCATAGAAATTGCTAAGTTTGCAGTGAAAGTCTTCAACCAAAAACATGGAAACAATCTCCAGTTTCAAGCCGTTTTGGAAGCTTGGGTTGTTGTTCATGTTGATGGCAAGAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGCATCGTTGCCTCCAGTATCATGCTGTTGTGATTGAAATCTGTGGCACTCCCCTGGCTGGAATCTTGTGTCTTTCAACCAAATCGTCGAGGAAAACTGAAAAAGTTATATGTATAATCGAAAGTTTATACTTATATATGTGCGAGATCTACGCAATAATAAATCTTATATGA

mRNA sequence

ATGACACTTGGTATTGGTGGAGGAATCAGTATCGGCCTTGGTATTCCTGGCATCAATATATCGATCGGCGGAGGCATCGGTATCAGGGGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGACTGAAATTAAGAGTGTGAACGATCCTGCTATCATAGAAATTGCTAAGTTTGCAGTGAAAGTCTTCAACCAAAAACATGGAAACAATCTCCAGTTTCAAGCCGTTTTGGAAGCTTGGGTTGTTGTTCATGTTGATGGCAAGAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGCATCGTTGCCTCCAGTATCATGCTGTTGTGATTGAAATCTGTGGCACTCCCCTGGCTGGAATCTTGTGTCTTTCAACCAAATCGTCGAGGAAAACTGAAAAAGTTATATGTATAATCGAAAGTTTATACTTATATATGTGCGAGATCTACGCAATAATAAATCTTATATGA

Coding sequence (CDS)

ATGACACTTGGTATTGGTGGAGGAATCAGTATCGGCCTTGGTATTCCTGGCATCAATATATCGATCGGCGGAGGCATCGGTATCAGGGGTAGAAAGGGGGGGTGCAAGAGTCATGATCCTTCAAAAAAATGGACTGAAATTAAGAGTGTGAACGATCCTGCTATCATAGAAATTGCTAAGTTTGCAGTGAAAGTCTTCAACCAAAAACATGGAAACAATCTCCAGTTTCAAGCCGTTTTGGAAGCTTGGGTTGTTGTTCATGTTGATGGCAAGAAAGAGTATAGTATTGAATTAGTAGCAAAAGACTGTTTGCATCGTTGCCTCCAGTATCATGCTGTTGTGATTGAAATCTGTGGCACTCCCCTGGCTGGAATCTTGTGTCTTTCAACCAAATCGTCGAGGAAAACTGAAAAAGTTATATGTATAATCGAAAGTTTATACTTATATATGTGCGAGATCTACGCAATAATAAATCTTATATGA

Protein sequence

MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAKFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGTPLAGILCLSTKSSRKTEKVICIIESLYLYMCEIYAIINLI

Homology

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BLAST of IVF0006941 vs. ExPASy Swiss-Prot
Match: Q84WT8 (Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 2.3e-04
Identity = 32/95 (33.68%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 22  IGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAKFAVKVFNQKHGNNLQFQAVLE 81
           +GGG G+  RK              IK+V+DP ++ +AK+A++  N++    L F  V+E
Sbjct: 23  LGGGGGLGSRK-------------PIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVE 82

Query: 82  AWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIE 117
               V V G K Y +++ AKD   +   Y AVV+E
Sbjct: 83  GTTQV-VSGTK-YDLKIAAKDGGGKIKNYEAVVVE 102

[Close]

BLAST of IVF0006941 vs. ExPASy TrEMBL
Match: A0A5A7SJV3 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001800 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.7e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120
           FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120

Query: 121 P 122
           P
Sbjct: 121 P 121

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BLAST of IVF0006941 vs. ExPASy TrEMBL
Match: E5GCR5 (Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.7e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120
           FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]

BLAST of IVF0006941 vs. ExPASy TrEMBL
Match: A0A5D3C621 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001790 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.7e-61
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGGGI IGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK
Sbjct: 1   MTLGIGGGIGIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120
           FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120

Query: 121 P 122
           P
Sbjct: 121 P 121

[Close]

BLAST of IVF0006941 vs. ExPASy TrEMBL
Match: A0A0A0K477 (PP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.1e-41
Identity = 87/122 (71.31%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60
           MT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ +   D  II +A
Sbjct: 24  MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 83

Query: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCL+RCL +HA+VIEI G
Sbjct: 84  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 143

Query: 121 TP 122
            P
Sbjct: 144 VP 145

[Close]

BLAST of IVF0006941 vs. ExPASy TrEMBL
Match: A0A5A7SQL4 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001810 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.2e-36
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGG I IG G+PG NISIGGGIGI GRKGGCKSH+PSKKW ++ +V  P ++E AK
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIE 117
           FAV  FN+K+ NNL+FQ V EAW V  V+ +KEYSIELVAKDC HR L++HAVVIE
Sbjct: 61  FAVDAFNKKYENNLEFQYVTEAW-VHEVNNEKEYSIELVAKDCFHRLLEFHAVVIE 115

[Close]

BLAST of IVF0006941 vs. NCBI nr
Match: ADN34263.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031424.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 245 bits (625), Expect = 7.67e-81
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK
Sbjct: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120
           FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120

[Close]

BLAST of IVF0006941 vs. NCBI nr
Match: TYK06875.1 (phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 243 bits (621), Expect = 3.12e-80
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGGGI IGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK
Sbjct: 1   MTLGIGGGIGIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120
           FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT
Sbjct: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICGT 120

[Close]

BLAST of IVF0006941 vs. NCBI nr
Match: XP_011658840.2 (uncharacterized protein LOC105436098 [Cucumis sativus])

HSP 1 Score: 177 bits (450), Expect = 3.31e-54
Identity = 87/122 (71.31%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60
           MT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ +   D  II +A
Sbjct: 1   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 60

Query: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCL+RCL +HA+VIEI G
Sbjct: 61  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 120

[Close]

BLAST of IVF0006941 vs. NCBI nr
Match: KAE8645826.1 (hypothetical protein Csa_017081 [Cucumis sativus])

HSP 1 Score: 177 bits (450), Expect = 4.28e-54
Identity = 87/122 (71.31%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVN-DPAIIEIA 60
           MT+GIGGGI IG+G+PGI +SIGGGIGI  RKGGCKSHDPSKKW+++ +   D  II +A
Sbjct: 9   MTIGIGGGIGIGIGVPGIKVSIGGGIGIGSRKGGCKSHDPSKKWSQVPNAQADQVIINVA 68

Query: 61  KFAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIEICG 120
            FAV  FNQK+GN L F AVLEAWVVV  DGKKEYSIELVAKDCL+RCL +HA+VIEI G
Sbjct: 69  NFAVAAFNQKYGNKLVFHAVLEAWVVVLPDGKKEYSIELVAKDCLNRCLYFHAIVIEIVG 128

[Close]

BLAST of IVF0006941 vs. NCBI nr
Match: ADN34264.1 (phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament protein [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (402), Expect = 6.36e-47
Identity = 80/116 (68.97%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 1   MTLGIGGGISIGLGIPGINISIGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAK 60
           MTLGIGG I IG G+PG NISIGGGIGI GRKGGCKSH+PSKKW ++ +V  P ++E AK
Sbjct: 1   MTLGIGGRIGIGFGLPGFNISIGGGIGIGGRKGGCKSHNPSKKWIQLHNVKAPDVLEAAK 60

Query: 61  FAVKVFNQKHGNNLQFQAVLEAWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIE 116
           FAV  FN+K+ NNL+FQ V EAWV   V+ +KEYSIELVAKDC HR L++HAVVIE
Sbjct: 61  FAVDAFNKKYENNLEFQYVTEAWVH-EVNNEKEYSIELVAKDCFHRLLEFHAVVIE 115

[Close]

BLAST of IVF0006941 vs. TAIR 10
Match: AT4G16500.1 (Cystatin/monellin superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.7e-05
Identity = 32/95 (33.68%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 22  IGGGIGIRGRKGGCKSHDPSKKWTEIKSVNDPAIIEIAKFAVKVFNQKHGNNLQFQAVLE 81
           +GGG G+  RK              IK+V+DP ++ +AK+A++  N++    L F  V+E
Sbjct: 23  LGGGGGLGSRK-------------PIKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVE 82

Query: 82  AWVVVHVDGKKEYSIELVAKDCLHRCLQYHAVVIE 117
               V V G K Y +++ AKD   +   Y AVV+E
Sbjct: 83  GTTQV-VSGTK-YDLKIAAKDGGGKIKNYEAVVVE 102

The following BLAST results are available for this feature:

BLAST of IVF0006941 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WT8	2.3e-04	33.68	Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=...	[more]

BLAST of IVF0006941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJV3	5.7e-62	100.00	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GCR5	5.7e-62	100.00	Phloem filament protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3C621	1.7e-61	99.17	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K477	1.1e-41	71.31	PP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067390 PE=4 SV...	[more]
A0A5A7SQL4	3.2e-36	68.97	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0006941 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34263.1	7.67e-81	100.00	phloem filament protein [Cucumis melo subsp. melo] >KAA0031424.1 phloem filament...	[more]
TYK06875.1	3.12e-80	99.17	phloem filament protein [Cucumis melo var. makuwa]	[more]
XP_011658840.2	3.31e-54	71.31	uncharacterized protein LOC105436098 [Cucumis sativus]	[more]
KAE8645826.1	4.28e-54	71.31	hypothetical protein Csa_017081 [Cucumis sativus]	[more]
ADN34264.1	6.36e-47	68.97	phloem filament protein [Cucumis melo subsp. melo] >KAA0031425.1 phloem filament...	[more]

BLAST of IVF0006941 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16500.1	1.7e-05	33.68	Cystatin/monellin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.10		coord: 39..121 e-value: 5.9E-13 score: 50.8
None	No IPR available	PANTHER	PTHR47116:SF5	PHLOEM FILAMENT PROTEIN	coord: 35..116
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 42..117
IPR000010	Cystatin domain	PFAM	PF16845	SQAPI	coord: 47..116 e-value: 2.0E-11 score: 44.0
IPR027214	Cystatin	PANTHER	PTHR47116	PHLOEM FILAMENT PROTEIN	coord: 35..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006941.1	IVF0006941.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010951	negative regulation of endopeptidase activity
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity