IVF0006647 (gene) Melon (IVF77) v1

Overview


Name	IVF0006647
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-binding protein 38-like
Location	chr03: 24983810 .. 24987350 (-)
RNA-Seq Expression	IVF0006647
Synteny	IVF0006647

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATAATTCCTTCTCCCCCATGCCCGCCCACCTCCTATCAATCTTTTCCTAATTAATAATCCTATTATCATCCTAATTCTTCCCCCTAATTATATCATATCATATATATGGCCGATAGCAATAATTTTCCCCTTAACCATCCACCGCCCTTCGCCGGCGACACCACCTGGACCAAACTCTTCGTCGGAGGCTTGGCTTGGGAAACCCAATCCCATGAAATGCACTCTTTTTTCCAACAATTCGGTGATATTCTTGAAGCTGTCATTATTCAAGATAAACACACCGGAAAATCCAAAGGTTATGGATTTGTAAGTAATTAAAGTTCCTTTATTAATTTTTTTTTAATTCCTCATTAATTCCCTTAATTATCAATTACTATCATTAAAACTTTGGCGATTTTAATTTTGATTTTTGTAATAATTAGGTTACTTTTAAAGACCCTGAATCCGCTAGAAGAGCTTGTGCTAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAATTGTAACATCGCCGCCTTCGGCCGCCCTCGTCCGCCCCCGTTCTCGCCGTCTTCCGGAGGTGATCTCCCAAATTAACTTTACTAAATTTATATTTGATTAATTTGATTGATTTATTAACTTTTTTTGGTTAATTTTTAATAGGAAGAAATCAAATTGGAAATCTACAAAGTACATCTCCTGCGGCTGCGGGGTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTTATTTTTCCACATTATAGGTTTGTGGGGTTAGCTATTCTTAAAATTCCCAGAAAATATGAGCTGTAAAATGGAATATATATATATATATATATATATATATAGAATCGAACTGTTTAATTTGTTGCATGGTGGTGGTGCCATAGGCAACAGTATTTTCGATGGTGACAATGTTTTTAAGGAAAAACAATTTACCTCGACAAGAAGTCAAATGTCTGTCCAATTTCAGAAGGAAAACAGAAAGCTTCGTCTTATCCATTTCTATTATTATTATTGTCGTTGTTGTTTATTTTTTTTGGTTTATTTCTTTTTGCAGATACCGATCATATGCCCCAAATTACACTGTTCCTTACCATCAAGTTAGTTTCTCTCTCTCTTTCTCTTTATTTTCAGTTTTTGTTTGAATTTTACTCGTTTTCAGAAACATCTATTTTTGGTTTTTTGATCATTTGAGTTGGCCATATTTTAAAAACTGAAGAAAAAAATTAGTTTTCAAAATAGGATTTAGCTAAGAGGAATAAAAAAGTTTGAGAAGAGTGGAATGAGTTTAGGGTTTAAAGGATTGAATCTCAAAATTAGAATTAAATGTCAAGAGAGAATTGAATTTAAAATGGTTGTGTGTGCAGGCTATTTATAATCCACAAATTCAACAGCCACAAATGTACCAGCAATCACCATCTCCATCGCCATCTTCTTCTTCTTCATATTATTATGGCTATGGCTATTCTTCTTCTCCTTCTTCTTCACAGCTTCCAAGAGCAGCATTTTCAGTACATGGCCATCCCCCACAATCACCATCATACTTTCCTTACTACACGAATTACACCCACATGCAACAACAAGCAGGCTTATTCTATACTCCAATGCCTCAGATCATTACTCCAAGTACTACCGGTAAATTATAATTATATATTCATTCCTTATTCTTCCAAGGTCAAATTGCAAAAAACAGTCCCCAGAATACAGTGTTAAAAGATGAACACTCTCCAACTTCTACAAGTTTGAGGGTATAGTTGTCATTACCATCATATTCAAGGGATAGTTTTTGTAATTTTGTCGTTTTTTTATTTGGTTTCTTAAATATTGCATGAATGTGAGATGATATTATATATATGAAATGAAGATCGCACACTGATTATAAAGGAGATTGAGAGTTTTGATTAGAATTATGGGAGAGGAGTTTGGGGGTTGTCTTTGTGTTTTTTTTTTCTGAAAGAGTGGCACATGGGGGGGTTAAGCCTGAAGAGGCCATGTGAATGAGCTGTCTGAGATACCCCATGAAAATGGGTGAAATGGAAAGGCATGACAGATTGGAATCAACAACAAATATAGTGACGCCCAACTTTTCTTTTTAATTCTCAATTCCTAAGACATTTATAGGTTTTAGTTTGGAAGTTTTAATTTTTAAAACTAACTATAATTAAGTTTGATTGTTAAGGTACATTTGACAATAATTTCTTTTTTTTTTTTTATTTCTTTTTCTAAAATTAAACCTAGTTTTCTCTTGTACCTATTTTTTTAACTAAGTAAATCTTTAATTATTCAAAATATTAAAATGAACTATAAAAGGGTGTAATAGTTTCAATTTTATCAAATTAACCTTCAATTTTTAAGTTTGTCTGTTTGACCAGTAGATTTTGAAAAATGTGTAATAATTGTTCAAACATTTACTTCTTTTTTGTCAAATAGATCTTTTTGACCTTTTTGAAGATTTTTGGTATGTAAAAACAAAAAAATTTAAGACCCTACTTGAATGTTTAAAATTTAATAGATTTATAACCATATAAATTTTTTAAAAGCCATAAAATTATCATCATAGATTAGTCTTATAGTTTGATAAAATACTCGTATAAAAGCTCGATACGTACGAGGTATAGAAACTTTATCTAATCGTTAAGGCTAAAATAAAAGAGAACTAAATTATAATTTTTTTTCTTATATTATATTGCTGAGATATGGGTTGCGAGTTGTATATATGTTGGGTAATATCATGAAATTTAAAAAGTGAAGACAAAAGAAAATTCATACAGAGCTTTTTTTTTTTTTTTATCGTTCAATATAGCTTCTTTTTCCCTATGATTTAACATTAACCAATAAAAGAAATACACTGTTTTTTTATTCTTCATATATATATATATATATATATATATATATATAATTGTTGAATAATTTTGAATCTATTCATTGATAAGATATATGTTAGAACTATTTGAATATTAGCTTTTGAAATCCAACTTTATTTATGGACTTCGGTTTATTTTAGTTCTGTTTAATTTTTAAATGTTAATTTTAGACTTCGGTTTAAATGTTAATCTTAGAAGAGGATCATTTTTGCCATTTTATTTTCATTTTTATCTTATTTGCTTTGATAATCCTAATTAAGCTAATATATTATATCTCTCTTTGTTAGTTATGTTTTGAACATATATATGTGTACGTTTTTTACTTTTCATCCTTAGATCAATGAAAATATAAGTGCGTGTTTACCTATTTAATTTAGTAGGTGTGGTCATTAGTCTAACCATTAACTCATTGGTTTAGATGACGATTGTGGGAATTTCTATAAAACCGACTGTCAAATTGTGTTAACATAGGATTTAGATCAAAAGCATACTATAAAATGTGGTTTGGGGCGGCTCTATATAAATTGAGGGATTAATGGTGTTTTCTTTTTCAAAAAAAAAAAAGGAATATAAATGTTGAAGTAGAAACTTTGTGTATATATTTTCAGGTTGGCAGACTCCACAGCATACTCCAACAGAGACAGAAGCTGGGGCAAGTGGTTCCAATAGTCCAAATACTTCATAG

mRNA sequence

CTTATAATTCCTTCTCCCCCATGCCCGCCCACCTCCTATCAATCTTTTCCTAATTAATAATCCTATTATCATCCTAATTCTTCCCCCTAATTATATCATATCATATATATGGCCGATAGCAATAATTTTCCCCTTAACCATCCACCGCCCTTCGCCGGCGACACCACCTGGACCAAACTCTTCGTCGGAGGCTTGGCTTGGGAAACCCAATCCCATGAAATGCACTCTTTTTTCCAACAATTCGGTGATATTCTTGAAGCTGTCATTATTCAAGATAAACACACCGGAAAATCCAAAGGTTATGGATTTGTTACTTTTAAAGACCCTGAATCCGCTAGAAGAGCTTGTGCTAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAATTGTAACATCGCCGCCTTCGGCCGCCCTCGTCCGCCCCCGTTCTCGCCGTCTTCCGGAGGAAGAAATCAAATTGGAAATCTACAAAGTACATCTCCTGCGGCTGCGGGGTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTTATTTTTCCACATTATAGATACCGATCATATGCCCCAAATTACACTGTTCCTTACCATCAAGCTATTTATAATCCACAAATTCAACAGCCACAAATGTACCAGCAATCACCATCTCCATCGCCATCTTCTTCTTCTTCATATTATTATGGCTATGGCTATTCTTCTTCTCCTTCTTCTTCACAGCTTCCAAGAGCAGCATTTTCAGTACATGGCCATCCCCCACAATCACCATCATACTTTCCTTACTACACGAATTACACCCACATGCAACAACAAGCAGGCTTATTCTATACTCCAATGCCTCAGATCATTACTCCAAGTACTACCGGTTGGCAGACTCCACAGCATACTCCAACAGAGACAGAAGCTGGGGCAAGTGGTTCCAATAGTCCAAATACTTCATAG

Coding sequence (CDS)

ATGGCCGATAGCAATAATTTTCCCCTTAACCATCCACCGCCCTTCGCCGGCGACACCACCTGGACCAAACTCTTCGTCGGAGGCTTGGCTTGGGAAACCCAATCCCATGAAATGCACTCTTTTTTCCAACAATTCGGTGATATTCTTGAAGCTGTCATTATTCAAGATAAACACACCGGAAAATCCAAAGGTTATGGATTTGTTACTTTTAAAGACCCTGAATCCGCTAGAAGAGCTTGTGCTAATCCAAATCCAATTATTTGTGGAAGAAGAGCTAATTGTAACATCGCCGCCTTCGGCCGCCCTCGTCCGCCCCCGTTCTCGCCGTCTTCCGGAGGAAGAAATCAAATTGGAAATCTACAAAGTACATCTCCTGCGGCTGCGGGGTCTTACGGTGGATTACGGCCGCCGTTTCCGCCGCCGCAGCTTATTTTTCCACATTATAGATACCGATCATATGCCCCAAATTACACTGTTCCTTACCATCAAGCTATTTATAATCCACAAATTCAACAGCCACAAATGTACCAGCAATCACCATCTCCATCGCCATCTTCTTCTTCTTCATATTATTATGGCTATGGCTATTCTTCTTCTCCTTCTTCTTCACAGCTTCCAAGAGCAGCATTTTCAGTACATGGCCATCCCCCACAATCACCATCATACTTTCCTTACTACACGAATTACACCCACATGCAACAACAAGCAGGCTTATTCTATACTCCAATGCCTCAGATCATTACTCCAAGTACTACCGGTTGGCAGACTCCACAGCATACTCCAACAGAGACAGAAGCTGGGGCAAGTGGTTCCAATAGTCCAAATACTTCATAG

Protein sequence

MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNLQSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSPSPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS

Homology

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BLAST of IVF0006647 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-23
Identity = 94/246 (38.21%), Postives = 113/246 (45.93%), Query Frame = 0


Query: 17  GDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESA 76
           GDT  TK+FVGGLAW+T    M+  F ++GDILEAVII DK T +SKGYGFVTFKD ++A
Sbjct: 12  GDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAA 71

Query: 77  RRACANPNPIICGRRANCNIAAFG---RPRPPPFSPSSGGRNQIGNLQSTSPAAAGSYGG 136
            RAC +  PII GRRANCN+A+ G   R  P   SP  G +N  GN    +P   G++  
Sbjct: 72  TRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKN--GN--RATPPHVGNHSQ 131

Query: 137 LRPP--FPPPQ------LIFPHYRYRS--YAPNYTVPYHQAIYNPQIQQPQMYQQSPSPS 196
              P  F   Q         P Y Y S   APN T                  Q  P P 
Sbjct: 132 WYYPSGFTNQQHQQQNHQAVPFYGYPSAYVAPNMTFNQKVGYVGGTYMNGYYAQMQPQPQ 191

Query: 197 PSSSSSYYYGYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQAGLFYTPM 250
                 YY+ + Y               V    P      P+YT Y + Q QA  F  P 
Sbjct: 192 SQPQPQYYHHHMYGG---------GRVMVGAASPM----VPFYTVYPYHQSQAIGF--PQ 238

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BLAST of IVF0006647 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 1.3e-21
Identity = 76/206 (36.89%), Postives = 111/206 (53.88%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESAR 77
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 78  RACANPNPIICGRRANCNIAAFGRPRPPPFSPS-SGGRNQIGNLQSTSPAAAGSYGGLRP 137
           RAC +PNPII GR+AN N+A  G  +P    P  + G  Q+       P    ++     
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG-AKPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 126

Query: 138 PFPPPQLIFPHYRYRSYAPNYT--VPYHQAIYNPQIQQPQMYQQSP-SPSPSSSSSYYY- 197
            F  P ++ PH +  + A + T  + Y  A Y         Y+Q P + SP++++ Y   
Sbjct: 127 AFVQPGVVIPHVQPAAAAASTTPYIGYTGAAYAQYSAAAAAYEQYPYAASPAAAAGYVAA 186

Query: 198 -GYGY-------SSSPSSSQLPRAAF 211
            GYGY       +++P ++    AAF
Sbjct: 187 GGYGYAVQQPITAAAPGTAAAAAAAF 211

[Close]

BLAST of IVF0006647 vs. ExPASy Swiss-Prot
Match: Q6DIV4 (RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 82/223 (36.77%), Postives = 112/223 (50.22%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESAR 77
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66

Query: 78  RACANPNPIICGRRANCNIAAFG-RPRPPPFSPSSGGRNQIGNLQSTSPAAAGSYGGLRP 137
           RAC +PNPII GR+AN N+A  G +PR    + + G       +Q   PA      GL P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRNLQSAFTIG-------VQQLHPAFIQRPFGLTP 126

Query: 138 PF-PPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQS---PSPSPSSSSSYYY 197
            +  PP ++ P     +  P+   PY    YN   Q    Y  +     P  +S ++ Y 
Sbjct: 127 QYIYPPAIVQPSVVIPTPIPSLQSPYID--YNAATQAFTHYTTAAYEQYPYAASPATGYM 186

Query: 198 GYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQ 236
           GYGY+S+           +  G PP +      Y  Y   Q Q
Sbjct: 187 GYGYTSAVQQPLSATTTTATTGAPPTA------YIQYQPQQLQ 214

[Close]

BLAST of IVF0006647 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-21
Identity = 71/195 (36.41%), Postives = 97/195 (49.74%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESAR 77
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ TGKS+GYGFVT  D  +A 
Sbjct: 28  DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87

Query: 78  RACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNLQST-------------S 137
           RAC +PNPII GR+AN N+A  G     P S  +G    +  L  T              
Sbjct: 88  RACKDPNPIIDGRKANVNLAYLG---AKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIY 147

Query: 138 PAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSPSPSP 197
           P A      + P  P P L  P+  Y   +P Y               P  Y Q P  + 
Sbjct: 148 PPAIVQPSVVIPATPVPSLSSPYLEYTPASPAYAQ-----------YPPATYDQYPYAAS 207

Query: 198 SSSSSYYYGYGYSSS 200
            ++++ + GYGY ++
Sbjct: 208 PAAATSFVGYGYPAA 208

[Close]

BLAST of IVF0006647 vs. ExPASy Swiss-Prot
Match: Q7T3I7 (RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-21
Identity = 74/186 (39.78%), Postives = 101/186 (54.30%), Query Frame = 0


Query: 18  DTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDPESAR 77
           DTT+TK+FVGGL + T    +  +F+ FGDI EAV+I D+ T KS+GYGFVT  D  +A 
Sbjct: 7   DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66

Query: 78  RACANPNPIICGRRANCNIAAFG-RPRPPPFSPSSGGRNQIGNLQSTSPAAAGSYGGLRP 137
           RAC +PNPII GR+AN N+A  G +PR    + + G       +Q   PA      GL P
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRNLQSAFTIG-------VQQLHPAFIQRPFGLTP 126

Query: 138 PF-PPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQS---PSPSPSSSSSYYY 197
            +  PP ++ P     +  P+   PY    YN   Q    Y  +     P  +S ++ Y 
Sbjct: 127 QYIYPPTIVQPSMVIPTPIPSLQSPYID--YNAATQAYTHYTTAAYEQYPYAASPATGYM 183

Query: 198 GYGYSS 199
           GYGY+S
Sbjct: 187 GYGYTS 183

[Close]

BLAST of IVF0006647 vs. ExPASy TrEMBL
Match: A0A1S3BBB0 (RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1)

HSP 1 Score: 570.9 bits (1470), Expect = 3.0e-159
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60
           MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120

Query: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180
           QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP
Sbjct: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQAGLFY 240
           SPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQAGLFY
Sbjct: 181 SPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQAGLFY 240

Query: 241 TPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 278
           TPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 TPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 277

[Close]

BLAST of IVF0006647 vs. ExPASy TrEMBL
Match: A0A0A0LLP2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV=1)

HSP 1 Score: 552.7 bits (1423), Expect = 8.4e-154
Identity = 270/277 (97.47%), Postives = 272/277 (98.19%), Query Frame = 0


Query: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60
           MAD+NNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPSSGGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180
           QST+PAAAGSYGGLRPPFPPP LIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP
Sbjct: 121 QSTAPAAAGSYGGLRPPFPPPPLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQAGLFY 240
           SPSPSSSSSYYY YGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQ GL Y
Sbjct: 181 SPSPSSSSSYYYSYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQ-GLVY 240

Query: 241 TPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 278
           TPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 TPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 276

[Close]

BLAST of IVF0006647 vs. ExPASy TrEMBL
Match: A0A6J1HBU2 (RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 9.5e-97
Identity = 208/293 (70.99%), Postives = 224/293 (76.45%), Query Frame = 0


Query: 4   SNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSK 63
           + NF   HPPPF GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII+DK+TGKSK
Sbjct: 2   AENFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 61

Query: 64  GYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSP-SSGGRNQIGNLQS 123
           GYGFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGNLQ+
Sbjct: 62  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 121

Query: 124 TSPAAAGSYGGLRPPF------PPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMY 183
           TS AAAGSYGGL  P+      PPPQ++FP YRYRSYAPNYT+PYHQAIYNPQ+Q  Q+Y
Sbjct: 122 TS-AAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 181

Query: 184 QQSPSPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSV--------HGHPP-----QSPSYF 243
            QSP      SSSY YGYGY SS S S  PR AF V        HGH P      SPSYF
Sbjct: 182 PQSP-----CSSSYGYGYGYPSSSSPS--PRGAFPVHGYGHGHGHGHDPSSPLSSSPSYF 241

Query: 244 PYYTNYTHMQQQAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNT 277
           PYYTNYTHMQQ   LFY  M QI TP TTG Q    +PTETE GASGSN+PNT
Sbjct: 242 PYYTNYTHMQQP--LFYAHMHQIATP-TTGRQ----SPTETEGGASGSNTPNT 278

[Close]

BLAST of IVF0006647 vs. ExPASy TrEMBL
Match: A0A6J1HBJ1 (RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111462586 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 7.8e-91
Identity = 202/293 (68.94%), Postives = 217/293 (74.06%), Query Frame = 0


Query: 4   SNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSK 63
           + NF   HPPPF GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII+DK+TGKSK
Sbjct: 2   AENFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 61

Query: 64  GYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSP-SSGGRNQIGNLQS 123
           GYGFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGNLQ+
Sbjct: 62  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 121

Query: 124 TSPAAAGSYGGLRPPF------PPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMY 183
           TS AAAGSYGGL  P+      PPPQ++FP YRYRSYAPNYT+PYHQA         Q+Y
Sbjct: 122 TS-AAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQA---------QLY 181

Query: 184 QQSPSPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSV--------HGHPP-----QSPSYF 243
            QSP      SSSY YGYGY SS S S  PR AF V        HGH P      SPSYF
Sbjct: 182 PQSP-----CSSSYGYGYGYPSSSSPS--PRGAFPVHGYGHGHGHGHDPSSPLSSSPSYF 241

Query: 244 PYYTNYTHMQQQAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNT 277
           PYYTNYTHMQQ   LFY  M QI TP TTG Q    +PTETE GASGSN+PNT
Sbjct: 242 PYYTNYTHMQQP--LFYAHMHQIATP-TTGRQ----SPTETEGGASGSNTPNT 269

[Close]

BLAST of IVF0006647 vs. ExPASy TrEMBL
Match: A0A6J1KAW8 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 7.3e-89
Identity = 196/292 (67.12%), Postives = 212/292 (72.60%), Query Frame = 0


Query: 4   SNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSK 63
           + NF   HPPPF GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII DK+TGKSK
Sbjct: 2   AENFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 61

Query: 64  GYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSP-SSGGRNQIGNLQS 123
           GYGFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGNL +
Sbjct: 62  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLHT 121

Query: 124 TSPAAAGSYGGLRPPF-------PPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQM 183
           TS AAA S+GGL  P+       PPPQ++FP YRYRSYAPNYT+PYH         QPQ+
Sbjct: 122 TS-AAAASFGGLLTPYPPPPSSPPPPQIMFPAYRYRSYAPNYTLPYH---------QPQL 181

Query: 184 YQQSPSPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHG------HPP-----QSPSYFP 243
           YQQSP      SSSY Y YGY S  SSSQ PR AF VHG      H P      SPSYFP
Sbjct: 182 YQQSP-----CSSSYGYAYGYPS--SSSQSPRVAFPVHGYGHGHAHGPSSPLSSSPSYFP 241

Query: 244 YYTNYTHMQQQAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNT 277
           YYTNYTHMQQ   LFY  M  I TP      T + +PTETE GASGSN+PNT
Sbjct: 242 YYTNYTHMQQP--LFYAHMHPIATPI-----TGRQSPTETEGGASGSNTPNT 268

[Close]

BLAST of IVF0006647 vs. NCBI nr
Match: XP_008444844.1 (PREDICTED: RNA-binding protein 38-like [Cucumis melo])

HSP 1 Score: 566 bits (1460), Expect = 6.65e-204
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60
           MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG
Sbjct: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120

Query: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180
           QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP
Sbjct: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQAGLFY 240
           SPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQAGLFY
Sbjct: 181 SPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQAGLFY 240

Query: 241 TPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 277
           TPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 TPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 277

[Close]

BLAST of IVF0006647 vs. NCBI nr
Match: XP_004152633.3 (RNA-binding protein 38 [Cucumis sativus] >KAE8652132.1 hypothetical protein Csa_022450 [Cucumis sativus])

HSP 1 Score: 551 bits (1419), Expect = 1.14e-197
Identity = 271/277 (97.83%), Postives = 273/277 (98.56%), Query Frame = 0


Query: 1   MADSNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60
           MAD+NNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG
Sbjct: 1   MADNNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTG 60

Query: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNL 120
           KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPSSGGRNQIGNL
Sbjct: 61  KSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPLSPSSGGRNQIGNL 120

Query: 121 QSTSPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180
           QST+PAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP
Sbjct: 121 QSTAPAAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP 180

Query: 181 SPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQAGLFY 240
           SPSPSSSSSYYY YGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQ GL Y
Sbjct: 181 SPSPSSSSSYYYSYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQ-GLVY 240

Query: 241 TPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 277
           TPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 TPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 276

[Close]

BLAST of IVF0006647 vs. NCBI nr
Match: XP_038884547.1 (RNA-binding protein 38-like [Benincasa hispida])

HSP 1 Score: 468 bits (1203), Expect = 7.93e-165
Identity = 249/279 (89.25%), Postives = 254/279 (91.04%), Query Frame = 0


Query: 1   MADSNNFPLNHP-PPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHT 60
           MAD+N+F LN P PPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHT
Sbjct: 1   MADNNSFLLNRPAPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHT 60

Query: 61  GKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGN 120
           GKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPP SPSSGGRNQ GN
Sbjct: 61  GKSKGYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPPSPSSGGRNQSGN 120

Query: 121 LQSTSP-AAAGSYGGLRPPFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQ 180
           LQST+P A AGSYGGLRPPFPPPQLIFP YRYRSYAPNYTVPY QAIYNPQ+QQPQMYQQ
Sbjct: 121 LQSTTPPAVAGSYGGLRPPFPPPQLIFPQYRYRSYAPNYTVPYPQAIYNPQLQQPQMYQQ 180

Query: 181 SPSPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQAGL 240
           SPS SPSSSS YY+GYGYSSS SSSQ PR AFS       SPSYFPYYTNYTHMQQ  GL
Sbjct: 181 SPSSSPSSSS-YYFGYGYSSS-SSSQHPRGAFSPLS---SSPSYFPYYTNYTHMQQ--GL 240

Query: 241 FYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNTS 277
           FYTPM QIITPST GWQTPQHTPTETEAGASGSNSPNTS
Sbjct: 241 FYTPMHQIITPST-GWQTPQHTPTETEAGASGSNSPNTS 271

[Close]

BLAST of IVF0006647 vs. NCBI nr
Match: XP_022961976.1 (RNA-binding protein 38-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 360 bits (924), Expect = 3.11e-122
Identity = 208/293 (70.99%), Postives = 224/293 (76.45%), Query Frame = 0


Query: 4   SNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSK 63
           + NF   HPPPF GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII+DK+TGKSK
Sbjct: 2   AENFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIRDKNTGKSK 61

Query: 64  GYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSS-GGRNQIGNLQS 123
           GYGFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGNLQ+
Sbjct: 62  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 121

Query: 124 TSPAAAGSYGGLRPPFPPP------QLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMY 183
           TS AAAGSYGGL  P+PPP      Q++FP YRYRSYAPNYT+PYHQAIYNPQ+Q  Q+Y
Sbjct: 122 TS-AAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 181

Query: 184 QQSPSPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHG--------HPPQSP-----SYF 243
            QSP      SSSY YGYGY SS  SS  PR AF VHG        H P SP     SYF
Sbjct: 182 PQSPC-----SSSYGYGYGYPSS--SSPSPRGAFPVHGYGHGHGHGHDPSSPLSSSPSYF 241

Query: 244 PYYTNYTHMQQQAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNT 276
           PYYTNYTHMQQ   LFY  M QI TP TTG Q+P    TETE GASGSN+PNT
Sbjct: 242 PYYTNYTHMQQP--LFYAHMHQIATP-TTGRQSP----TETEGGASGSNTPNT 278

[Close]

BLAST of IVF0006647 vs. NCBI nr
Match: XP_023546076.1 (RNA-binding protein 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 359 bits (921), Expect = 9.52e-122
Identity = 206/293 (70.31%), Postives = 221/293 (75.43%), Query Frame = 0


Query: 4   SNNFPLNHPPPFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSK 63
           + NF   HPPPF GDTTWTKLFVGGLAWETQS EM +FFQQFG+ILEAVII DK+TGKSK
Sbjct: 2   AENFSNTHPPPF-GDTTWTKLFVGGLAWETQSDEMRAFFQQFGEILEAVIIHDKNTGKSK 61

Query: 64  GYGFVTFKDPESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSS-GGRNQIGNLQS 123
           GYGFVTF+DP+SARRACANPNPIICGRRANCNIAAFGR RPPP  P   GGRNQIGNLQ+
Sbjct: 62  GYGFVTFRDPDSARRACANPNPIICGRRANCNIAAFGRARPPPPPPLLLGGRNQIGNLQT 121

Query: 124 TSPAAAGSYGGLRPPFPPP------QLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMY 183
            S AAAGSYGGL  P+PPP      Q++FP YRYRSYAPNYT+PYHQAIYNPQ+Q  Q+Y
Sbjct: 122 AS-AAAGSYGGLLTPYPPPPSPPPPQIMFPAYRYRSYAPNYTLPYHQAIYNPQLQSAQLY 181

Query: 184 QQSPSPSPSSSSSYYYGYGYSSSPSSSQLPRAAFSVHG--------HPPQSP-----SYF 243
           Q SP      SSSY YGYGY    SSS  PR AF VHG        H P SP     SYF
Sbjct: 182 QPSPC-----SSSYGYGYGYGYPSSSSPSPRGAFPVHGYEHGHVHGHGPSSPLSSSPSYF 241

Query: 244 PYYTNYTHMQQQAGLFYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNSPNT 276
           PYYTNYTHMQQ   LFY  M QI TP TTG Q+P    TETE GASGSN+PNT
Sbjct: 242 PYYTNYTHMQQP--LFYAHMHQIATP-TTGRQSP----TETEGGASGSNTPNT 280

[Close]

BLAST of IVF0006647 vs. TAIR 10
Match: AT1G78260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 198.4 bits (503), Expect = 7.8e-51
Identity = 129/276 (46.74%), Postives = 161/276 (58.33%), Query Frame = 0


Query: 14  PFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDP 73
           PF GDTT+TK+FVGGLAWET + EM  +F+QFG+ILEAVII DK+TGKSKGYGFVTF++ 
Sbjct: 10  PF-GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRES 69

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNLQSTSPAAAGSYGG 133
           +SA RA A+PNP+I GR+ANCNIA+FGRPRP P      GR Q G+          +Y G
Sbjct: 70  DSATRAVADPNPVIDGRKANCNIASFGRPRPSP----PRGRGQTGSPSQYQSGGPSTYTG 129

Query: 134 LRPPFPP---PQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP------SPSP 193
           +  P PP   PQL++P Y Y +Y P+    YHQA+YN Q+QQ Q YQQ        + SP
Sbjct: 130 MAAPLPPAAAPQLMYPSYGY-TYNPD-QFGYHQALYNTQLQQAQYYQQQQQLYGGGATSP 189

Query: 194 SSS------SSYYYGYGYSSSPSSSQLPRAAFSVHGHPPQ-------------SPSYFPY 253
           SSS      S YYYGY       S Q PR  +  H H PQ             SPS+  Y
Sbjct: 190 SSSGATIMPSPYYYGY-------SLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLVY 249

Query: 254 YTNYTHMQQQAGLFYTPMPQIITPSTTGWQTPQHTP 262
            +N +        F  P+  +++ ST     PQ  P
Sbjct: 250 PSNSS--------FAPPLQGVLSSSTESEAVPQQVP 263

[Close]

BLAST of IVF0006647 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 191.4 bits (485), Expect = 9.5e-49
Identity = 127/275 (46.18%), Postives = 160/275 (58.18%), Query Frame = 0


Query: 14  PFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDP 73
           PF GDTT+TK+FVGGLAWET + EM  +F+QFG+ILEAVII DK+TGKSKGYGFVTF++ 
Sbjct: 10  PF-GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRES 69

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNLQSTSPAAAGSYGG 133
           +SA RA A+PNP+I GR+ANCNIA+FGRPRP P      GR Q G+          +Y G
Sbjct: 70  DSATRAVADPNPVIDGRKANCNIASFGRPRPSP----PRGRGQTGSPSQYQSGGPSTYTG 129

Query: 134 LRPPFPP---PQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSP------SPSP 193
           +  P PP   PQL++P Y Y +Y P+    YHQA+YN Q+QQ Q YQQ        + SP
Sbjct: 130 MAAPLPPAAAPQLMYPSYGY-TYNPD-QFGYHQALYNTQLQQAQYYQQQQQLYGGGATSP 189

Query: 194 SSS------SSYYYGYGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQAGL 253
           SSS      S YYYGY       S Q PR  +  H H PQ     PY     H Q+    
Sbjct: 190 SSSGATIMPSPYYYGY-------SLQAPRVPYQHHHHLPQ-----PYNPQQHHHQR---- 249

Query: 254 FYTPMPQIITPSTTGWQTPQHTPTETEAGASGSNS 274
            ++    ++ PS + +  P      +  G    NS
Sbjct: 250 -FSSPSFLVYPSNSSFAPPLQGVLSSSTGTYLINS 260

[Close]

BLAST of IVF0006647 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 176.4 bits (446), Expect = 3.2e-44
Identity = 120/268 (44.78%), Postives = 150/268 (55.97%), Query Frame = 0


Query: 14  PFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDP 73
           PF GDTT TK+FVGGLAWET + EM  +F QFG+ILEAVII DK TGKSKGYGFVTF+D 
Sbjct: 10  PF-GDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDS 69

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPPPFSPSSGGRNQIGNLQSTSPAAAGSYGG 133
           +SA RA A+PNP+I GR+ANCNIA+FGRPRP     +  GR Q G+          SY G
Sbjct: 70  DSATRAVADPNPVIDGRKANCNIASFGRPRP----STPRGRGQGGSPSQYQGGGQSSYTG 129

Query: 134 LRPPF---PPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSPSPSPSSSSSY 193
           +  P       QL++P Y    Y  N    YHQA+YN Q+QQ Q YQQ            
Sbjct: 130 MAAPVQQAAAAQLMYPSY---GYTYNSEYGYHQALYNAQLQQAQYYQQQ----------- 189

Query: 194 YYGYGYSSSPSSSQ-LPRAAFSVHGHPPQSPSYFPYYTNYTHMQQQAGLFYTPMPQ---- 253
            YG G ++SPSSS  +P   + +    P+   +   +  Y H QQQ       +P     
Sbjct: 190 MYGGGGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSY 249

Query: 254 IITPSTTGWQTPQHTPTETEAGASGSNS 274
           +I PS     TP + PT     +S + S
Sbjct: 250 LIYPSNVEAPTPSNVPTSQGPLSSSTES 258

[Close]

BLAST of IVF0006647 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 163.3 bits (412), Expect = 2.8e-40
Identity = 96/189 (50.79%), Postives = 125/189 (66.14%), Query Frame = 0


Query: 14  PFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDP 73
           PF GDTT+TK+FVGGLAWETQS  +   F+Q+G+ILEAV+I DK+TG+SKGYGFVTF+DP
Sbjct: 17  PF-GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDP 76

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPP-PFS--PSSGGRNQ-----IGNLQSTSP 133
           E+ARRACA+P PII GRRANCN+A+ GRPRPP P++  P+  GR +     IGN+Q    
Sbjct: 77  EAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQGPRG 136

Query: 134 AAAGSYGGLRP-PFPPPQLIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSPSPSP 193
           +  G+Y   +P P+   Q +   Y   +Y P Y     Q +Y+P + Q Q  Q    P  
Sbjct: 137 SLIGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMGQ-QYLQVYGVPGA 196

[Close]

BLAST of IVF0006647 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 148.3 bits (373), Expect = 9.2e-36
Identity = 111/263 (42.21%), Postives = 143/263 (54.37%), Query Frame = 0


Query: 14  PFAGDTTWTKLFVGGLAWETQSHEMHSFFQQFGDILEAVIIQDKHTGKSKGYGFVTFKDP 73
           PF GDTT+TK+FVGGLAWETQS  +   F Q+GDILEAV+I DK+TG+SKGYGFVTF+DP
Sbjct: 17  PF-GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDP 76

Query: 74  ESARRACANPNPIICGRRANCNIAAFGRPRPP---PFSPSSGGRNQ-----IGNLQSTSP 133
           E+ARRAC +P PII GRRANCN+A+ GR RPP      P + GR +     +G++QS   
Sbjct: 77  EAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQSPRG 136

Query: 134 AAAGSYGGLRPPFPPPQ--LIFPHYRYRSYAPNYTVPYHQAIYNPQIQQPQMYQQSPSPS 193
              GS+   +PP    Q  +++P Y    Y P+Y     Q  Y P + Q Q  Q    P 
Sbjct: 137 LHFGSHPYHQPPTYNYQQGVVYP-YGVTPYGPDYMYSQSQGFYGPYMGQ-QYLQVYGVPG 196

Query: 194 PSSSSSYYYG---------YGYSSSPSSSQLPRAAFSVHGHPPQSPSYFPYYTNYTHMQQ 253
             +S  Y YG         +GY++    S        +    P S    PY +      Q
Sbjct: 197 AVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMSAIQSPYPSPSAPTHQ 256

The following BLAST results are available for this feature:

BLAST of IVF0006647 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	1.3e-23	38.21	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q5ZMA3	1.3e-21	36.89	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]
Q6DIV4	2.1e-21	36.77	RNA-binding protein 38 OS=Xenopus tropicalis OX=8364 GN=rbm38 PE=2 SV=1	[more]
Q62176	2.8e-21	36.41	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
Q7T3I7	3.7e-21	39.78	RNA-binding protein 38 OS=Xenopus laevis OX=8355 GN=rbm38 PE=1 SV=2	[more]

BLAST of IVF0006647 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBB0	3.0e-159	100.00	RNA-binding protein 38-like OS=Cucumis melo OX=3656 GN=LOC103488068 PE=4 SV=1	[more]
A0A0A0LLP2	8.4e-154	97.47	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G368990 PE=4 SV...	[more]
A0A6J1HBU2	9.5e-97	70.99	RNA-binding protein 38-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1HBJ1	7.8e-91	68.94	RNA-binding protein 38-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KAW8	7.3e-89	67.12	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111492201 PE=4 SV=...	[more]

BLAST of IVF0006647 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444844.1	6.65e-204	100.00	PREDICTED: RNA-binding protein 38-like [Cucumis melo]	[more]
XP_004152633.3	1.14e-197	97.83	RNA-binding protein 38 [Cucumis sativus] >KAE8652132.1 hypothetical protein Csa_...	[more]
XP_038884547.1	7.93e-165	89.25	RNA-binding protein 38-like [Benincasa hispida]	[more]
XP_022961976.1	3.11e-122	70.99	RNA-binding protein 38-like isoform X1 [Cucurbita moschata]	[more]
XP_023546076.1	9.52e-122	70.31	RNA-binding protein 38-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0006647 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78260.1	7.8e-51	46.74	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	9.5e-49	46.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	3.2e-44	44.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76460.1	2.8e-40	50.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	9.2e-36	42.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 23..95 e-value: 2.0E-23 score: 93.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 24..82 e-value: 6.1E-17 score: 61.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 22..99 score: 16.056692
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 6..116 e-value: 2.8E-24 score: 87.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..277
None	No IPR available	PANTHER	PTHR11176:SF23	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 17..260
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 22..97 e-value: 2.39898E-40 score: 132.739
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 17..260
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 18..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006647.2	IVF0006647.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding