IVF0006529 (gene) Melon (IVF77) v1

Overview


Name	IVF0006529
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	60S ribosomal protein L35-like
Location	chr10: 5493467 .. 5495008 (-)
RNA-Seq Expression	IVF0006529
Synteny	IVF0006529

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCTTCAACCTAGGGTTTTGAAGACCACCGCCGAATCCCAAAACTCAACTCCCGGTCTCTGCTTAACAGATTCTAATGGGTAAAATCTTACGAACCCTTGCTTAACTGAAGCTTTTTCTTCAAGAATTTCTGCGTTGTCGAGCAACATCCATCGATTCGAGATTGATTTCGTCTTTTTTTTTTTTCTTTTTCTTTTTGTATTTCTCTGGGTGATTTTCTTGATTTGATTGAGTGCAGCGAGAATTAAGGTTCATGAGCTTAGACAAAAGTCGAAGGGGGATCTTTTAGCCCAGCTTAAGGACCTTAAGGCGGAGCTTGCTCTCCTCCGTGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGCTTTCCAAAATGTACTTTCTTCTACCTTTCTATTGGTTTTCTTTCTTTCTTTTTTCTTTTTTTTTTTTCTGTTAGTGTATGTATTTTGATTGTTGTACTTTTGGGGTTTTTGCTGTGATTTTTATTGGGTTTGTTTTGATTGTTCTTCACTGCAGTAAGGTAGTGAGGTTGTCTATCGCTCAGGTGTTGACAGTGATTTCTCAGAAGCAGAAGGCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAACTTTTGCCTCTTGATTTGCGCCCAAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAACACCAAGTAAGACTTTTCTTCATCTGAAATATATTCCTTTCCAAGCGGTTGTATTTGTATCTTTATGCTTAAATTTCTGCTAAATATATGATTCCTTGTCAATGGCTGGATTCGCAATGTTGAATAATCTATGTTGAATGGATATGTATTCTGTTGTTTGCTATAAATTTATTGTTAACATTGAAGCTTCGAGTGTCTAACGTGTACGGTTTTATCACTTTCGCCATTTATTTGACTCTTATTTTCCTAAGATTGTTAAGCCACCGGATTTTAGAAATTAAAAGATGCTTCTTTTTATTAGAGAATGATGCTACTAGAATTGGAAGCCTTGTAGATAGTTTTCATGCCTTAGTACTATTAACAAGACTCAGTTTCATGCCTTATTTAGAATGTGTATATTTCAAGTAATCTCTCAGTTCTCTATGGTAATGAATATTGAGAGTGATCAGAATTGTGTGTTTTTGTTGTATTGAAATACTGAAAAGTGTTGTTTTTCCTCTTTCTGATTCGGTATTTTTGTATTGCGTTTTTCAGGAATCTCTAAAGACGGAGCGACAGAAGAAGAAAGAGATGTACTACCCACTGAGGAAGTATGCCATTAAGGTGTAGGCTTAGAGAGAATTGATTGATGATCCTCCGTGGTATCATGCATCTTCTACTCATTTTGGCTTTTGATTTATCTATAACTTTATTCAGACTTGAGTGCCTATTTTCAATCTTATTGTTAGATCTTTGAACTTTGAAGTCTTTCCTTTCTTTCCATGTAATACTTTAGTTTCTCAAGTTATAATGAAATGGTTTTGGTTAATGACCTTAGGCAGCTCTATCTTTTGCTAAGTTGAATGTGCTCTGATTTTAAACCATAGGCAGCT

mRNA sequence

GTTTCTTCAACCTAGGGTTTTGAAGACCACCGCCGAATCCCAAAACTCAACTCCCGGTCTCTGCTTAACAGATTCTAATGGCGAGAATTAAGGTTCATGAGCTTAGACAAAAGTCGAAGGGGGATCTTTTAGCCCAGCTTAAGGACCTTAAGGCGGAGCTTGCTCTCCTCCGTGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGCTTTCCAAAATTAAGGTAGTGAGGTTGTCTATCGCTCAGGTGTTGACAGTGATTTCTCAGAAGCAGAAGGCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAACTTTTGCCTCTTGATTTGCGCCCAAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAACACCAAGAATCTCTAAAGACGGAGCGACAGAAGAAGAAAGAGATGTACTACCCACTGAGGAAGTATGCCATTAAGGTGTAGGCTTAGAGAGAATTGATTGATGATCCTCCGTGGTATCATGCATCTTCTACTCATTTTGGCTTTTGATTTATCTATAACTTTATTCAGACTTGAGTGCCTATTTTCAATCTTATTGTTAGATCTTTGAACTTTGAAGTCTTTCCTTTCTTTCCATGTAATACTTTAGTTTCTCAAGTTATAATGAAATGGTTTTGGTTAATGACCTTAGGCAGCTCTATCTTTTGCTAAGTTGAATGTGCTCTGATTTTAAACCATAGGCAGCT

Coding sequence (CDS)

ATGGCGAGAATTAAGGTTCATGAGCTTAGACAAAAGTCGAAGGGGGATCTTTTAGCCCAGCTTAAGGACCTTAAGGCGGAGCTTGCTCTCCTCCGTGTCGCTAAGGTCACTGGTGGTGCTCCTAACAAGCTTTCCAAAATTAAGGTAGTGAGGTTGTCTATCGCTCAGGTGTTGACAGTGATTTCTCAGAAGCAGAAGGCTGCTCTTAGGGAAGCTTACAAGAAGAAGAAACTTTTGCCTCTTGATTTGCGCCCAAAGAAGACCAGGGCCATTCGTAGAAGGCTCACCAAACACCAAGAATCTCTAAAGACGGAGCGACAGAAGAAGAAAGAGATGTACTACCCACTGAGGAAGTATGCCATTAAGGTGTAG

Protein sequence

MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYAIKV

Homology

[Close]

BLAST of IVF0006529 vs. ExPASy Swiss-Prot
Match: Q9M5L0 (60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 5.7e-51
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQK+K +LL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
           ISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ+SLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. ExPASy Swiss-Prot
Match: O80626 (60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.1e-49
Identity = 110/123 (89.43%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ SLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. ExPASy Swiss-Prot
Match: Q9SF53 (60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.1e-49
Identity = 110/123 (89.43%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ SLKTER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. ExPASy Swiss-Prot
Match: Q9LZ41 (60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 7.0e-49
Identity = 110/123 (89.43%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ SLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. ExPASy Swiss-Prot
Match: Q9M3D2 (60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.5e-48
Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ SLKTER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. ExPASy TrEMBL
Match: A0A1S3CF13 (60S ribosomal protein L35-like OS=Cucumis melo OX=3656 GN=LOC103500179 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. ExPASy TrEMBL
Match: A0A0A0KLK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G178720 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.4e-53
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ SLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. ExPASy TrEMBL
Match: A0A5A7V711 (60S ribosomal protein L35-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00120 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.4e-52
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 2   ARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVI 61
           ARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVI
Sbjct: 34  ARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVI 93

Query: 62  SQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYAI 121
           SQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYAI
Sbjct: 94  SQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYAI 153

Query: 122 K 123
           K
Sbjct: 154 K 154

[Close]

BLAST of IVF0006529 vs. ExPASy TrEMBL
Match: A0A6J1CDN9 (60S ribosomal protein L35-2 OS=Momordica charantia OX=3673 GN=LOC111010277 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 9.2e-52
Identity = 120/123 (97.56%), Postives = 120/123 (97.56%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLGQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ SLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. ExPASy TrEMBL
Match: A0A6J1BZV3 (60S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111006751 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.7e-51
Identity = 119/123 (96.75%), Postives = 120/123 (97.56%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ SLKTERQKKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. NCBI nr
Match: XP_008461617.1 (PREDICTED: 60S ribosomal protein L35-like [Cucumis melo])

HSP 1 Score: 221 bits (562), Expect = 4.51e-72
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. NCBI nr
Match: XP_004150961.1 (60S ribosomal protein L35 [Cucumis sativus] >KGN50505.1 hypothetical protein Csa_000675 [Cucumis sativus])

HSP 1 Score: 218 bits (556), Expect = 3.71e-71
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ SLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. NCBI nr
Match: KAA0062216.1 (60S ribosomal protein L35-like [Cucumis melo var. makuwa])

HSP 1 Score: 217 bits (553), Expect = 4.24e-70
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 2   ARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVI 61
           ARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVI
Sbjct: 34  ARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVI 93

Query: 62  SQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYAI 121
           SQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYAI
Sbjct: 94  SQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYAI 153

[Close]

BLAST of IVF0006529 vs. NCBI nr
Match: XP_038891782.1 (60S ribosomal protein L35-like [Benincasa hispida])

HSP 1 Score: 216 bits (549), Expect = 4.33e-70
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKGDLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ SLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKSALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. NCBI nr
Match: XP_022139337.1 (60S ribosomal protein L35-2 [Momordica charantia])

HSP 1 Score: 214 bits (546), Expect = 1.24e-69
Identity = 120/123 (97.56%), Postives = 120/123 (97.56%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLGQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQ SLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 123
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. TAIR 10
Match: AT2G39390.1 (Ribosomal L29 family protein )

HSP 1 Score: 197.2 bits (500), Expect = 7.7e-51
Identity = 110/123 (89.43%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ SLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. TAIR 10
Match: AT3G09500.1 (Ribosomal L29 family protein )

HSP 1 Score: 195.7 bits (496), Expect = 2.2e-50
Identity = 110/123 (89.43%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ SLKTER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. TAIR 10
Match: AT5G02610.1 (Ribosomal L29 family protein )

HSP 1 Score: 194.5 bits (493), Expect = 5.0e-50
Identity = 110/123 (89.43%), Postives = 115/123 (93.50%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ SLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. TAIR 10
Match: AT3G55170.1 (Ribosomal L29 family protein )

HSP 1 Score: 192.2 bits (487), Expect = 2.5e-49
Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ SLKTER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of IVF0006529 vs. TAIR 10
Match: AT3G55170.2 (Ribosomal L29 family protein )

HSP 1 Score: 192.2 bits (487), Expect = 2.5e-49
Identity = 108/123 (87.80%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQESLKTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQ SLKTER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

The following BLAST results are available for this feature:

BLAST of IVF0006529 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5L0	5.7e-51	91.06	60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1	[more]
O80626	1.1e-49	89.43	60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1	[more]
Q9SF53	3.1e-49	89.43	60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1	[more]
Q9LZ41	7.0e-49	89.43	60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1	[more]
Q9M3D2	3.5e-48	87.80	60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1	[more]

BLAST of IVF0006529 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CF13	1.3e-53	100.00	60S ribosomal protein L35-like OS=Cucumis melo OX=3656 GN=LOC103500179 PE=3 SV=1	[more]
A0A0A0KLK6	6.4e-53	99.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G178720 PE=3 SV=1	[more]
A0A5A7V711	1.4e-52	100.00	60S ribosomal protein L35-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1CDN9	9.2e-52	97.56	60S ribosomal protein L35-2 OS=Momordica charantia OX=3673 GN=LOC111010277 PE=3 ...	[more]
A0A6J1BZV3	2.7e-51	96.75	60S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111006751 PE=3 SV...	[more]

BLAST of IVF0006529 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461617.1	4.51e-72	100.00	PREDICTED: 60S ribosomal protein L35-like [Cucumis melo]	[more]
XP_004150961.1	3.71e-71	99.19	60S ribosomal protein L35 [Cucumis sativus] >KGN50505.1 hypothetical protein Csa...	[more]
KAA0062216.1	4.24e-70	100.00	60S ribosomal protein L35-like [Cucumis melo var. makuwa]	[more]
XP_038891782.1	4.33e-70	97.56	60S ribosomal protein L35-like [Benincasa hispida]	[more]
XP_022139337.1	1.24e-69	97.56	60S ribosomal protein L35-2 [Momordica charantia]	[more]

BLAST of IVF0006529 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39390.1	7.7e-51	89.43	Ribosomal L29 family protein	[more]
AT3G09500.1	2.2e-50	89.43	Ribosomal L29 family protein	[more]
AT5G02610.1	5.0e-50	89.43	Ribosomal L29 family protein	[more]
AT3G55170.1	2.5e-49	87.80	Ribosomal L29 family protein	[more]
AT3G55170.2	2.5e-49	87.80	Ribosomal L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34
None	No IPR available	GENE3D	6.10.250.3450		coord: 78..123 e-value: 1.9E-22 score: 81.2
None	No IPR available	PANTHER	PTHR45722:SF18	60S RIBOSOMAL PROTEIN L35-LIKE	coord: 1..123
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 8..64 e-value: 5.92218E-11 score: 52.1047
IPR001854	Ribosomal protein L29/L35	PFAM	PF00831	Ribosomal_L29	coord: 8..64 e-value: 2.2E-17 score: 62.8
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 8..64 e-value: 2.1E-18 score: 64.1
IPR001854	Ribosomal protein L29/L35	HAMAP	MF_00374	Ribosomal_L29	coord: 4..64 score: 12.877207
IPR036049	Ribosomal protein L29/L35 superfamily	GENE3D	1.10.287.310		coord: 1..77 e-value: 2.4E-35 score: 122.7
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 4..65
IPR045059	60S ribosomal protein L35	PANTHER	PTHR45722	60S RIBOSOMAL PROTEIN L35	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006529.1	IVF0006529.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome