IVF0006141 (gene) Melon (IVF77) v1

Overview


Name	IVF0006141
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	DNA-directed RNA polymerase
Location	chr05: 22106841 .. 22119665 (-)
RNA-Seq Expression	IVF0006141
Synteny	IVF0006141

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAGCAAGAGGTTTAAGAAGGGGTTTCATCGTTCTTACTCACATACACAACGCTGTCTCTTCCTCAATGCCTTAATTTTATCTTCAAAAGAAATGACGACCACGGCCTCCTTCTTCCCAACTCTTCAAGCTCCAATTCATGGCAGCAATGCATGGAAGAAACCCACCAAGAGATGGAAATGCGAAAGAAAAACCCAAACATCATTTACCTCAACCTTCAATTCTTCTCTTTCTTCTGTTTCTTTCCCGATAAACTTCGATTCCACTTCCCAACCATTCCATCTTCAACCTCTAGCTGATTCAGTTCATGAAAATTTCACAGAAACTCTCGATAATTCCATGAATTTGCAGATACCCACCAGCGAAATTCACCAGATAACTCGAGGGGAATCTGGTCAAAGAATCTTCATTCAGGATCCACCATGGATAGCTTCCCTGTTCTTGAAGGGGCTTTACAAATGCGTTCAGAAGGAAGTGAAATTAGAATTTATGAAAATTGAGAAGAGGAAGTATAATTTGCTGAGAAGGAGACAGATTAAGGCGGAGACAGAGGCTTGGGAGAAGATGGTTAAGGAGTATAAGGAGTTAGAGAGAGAAATGTGCGAGAAGAAATTAGCGCCGAATTTGCCTTATGTGAAGACGTTGTTTTTGGGTTGGTTTGAGCCATTGAAGCAAGCCATAGAGAAGGAGCAAAAAACGCAAAGGAGTAAGAAGCAGAAGGCGGCATTCGCACCTCATATAGAGTTATTATCTGCAGATAAACTAGCGGTTATTGTGATGTACAAGATGATGGGATTGTTGATGGTGGCGCAGCAAGATTGCTGTGTTCAGGTCGTTCAGGCTGCGGTCCAGATTGGTGGTGCTATAGAGCAAGAGGTGAGCATTGGAGGTCTTGTGCTTTCTTTTAAGATGATTTTTTCTAATTGAGCAATTACTCCTAGAACTTATGAACTTGTCGAAATAAAACACTACTGTTAGTGTCGGTTAGTGTACCACTGTAGCTTCAAAAAATGCACAACTCATTTGGAACAACTCTAAACTAGATTACAGTTGCAATTCTACCTCAAACTTGTGACATTGTTGAAGCTAGATTCAACCATGTATGGAGTTATAACAGTATGTTTAATTGTACCGACAGCCTGCAATGTATTCAACCAAAGTGTTTTAGTATTGAAGGCCCTGGGTATGATATAGATTTAATTTAATTGCATACAAAATACTTTGGTAGCATCATTACATTAGATTTAATTTAGTTTGAACGTCTTACATTTCAAAATGACTTCATATCGTTTTAACTATCGAACTAGAGTTTTTGAGTTTACATCACTGTAATTTGAATTCTGCTAGCATCATTAAATAATTGTGTAAAGGGCTCGACTCTTCCTCTGAAATTAAACCAGGTTAGAATTCAGAGCTTTCTGGAGAAGGCTAGGAGTAATCAGAGAACAAAGGTCCCAGCAGATACTGAGTGTTTGAGCAAGGAGAAAGAGGTATTGAGGAAACGAGTTAATGGTTTAATTAGGAGAAGGAGGCTGAAAGAGGTGCAAAAGTTGTTGAAGAAAGAAGAATTTAAGGCTTGGGGTCGAGACACCCAAGCTAAGGTTTGTGACTTCTATCTGTTATCTTATATGATTCAATGTAATCAATTCAATACTATTATTTGTAAGGCTTCTCTACCCTATCAAACTTTGCAGCTAGGAAGTCGTCTCATAGAATTGTTGATTGAATCAGCTTTCATTCAACCTCCAGTTAGCCAGTCAGCTGACAGTCCACCCGATGTCCGACCTGCATTCTGGCATGGGTTTAAACCTGTTGCAAAAACTCCAGGGTGAGATTTATTTGTTCTGTCCATTTTCTGTTTCTTACAGATTGATGACCAAGCCACCAATTAGATTCCATTTAACCAACCTCCACAGATTTTTTCATTAGAGTATGCTCAATAGGTAATGTTTTATAGCAATGAGCCGGGGGTATTTGGTGCTGGTTTTTGTCATCCTTCTATGGCTTTTCTTGTCTTTTCCCCCCTTTTGGAGTGGGTGAGCTGGGTGGATGGCTGCTGCTTGGCAGGATCAAGTAGCCAACTCTTTTCATGGTAGCCTTTTCTGAACAGCTTATCATGCTTCTGAGTTCTGCATTTGTTTGATGATTGTAGGCAGAATTTTGTGAAGAAATATGGAGTTATCGAATGTGATCCCATAGTTCTTGCTGGGCTTGACCAAACTGTAAGTTACCTCCTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTCAGAATATTAAAAGAATAAAGTGACATATTCTTAAATGGAACTGCATGAATTCATGTATCAAATGGAACTTTTTGTGCTCCCAAAATTTTCTTTTCTAAACTATTACTTTCTGTCTTTAATCCTATGCAGGCTAAGCATATGTTAATTCCTTACATCCCTATGTTGGTTCCTCCTAAAAAATGGAAAGGGTATGAAGCAAATTGAATAAATGCACTTTATACTGTATATTTTTGTTAGGGTACCTGGCTCGTGTTTACTGCATCAAAAGATGCTGGCTTATAAGTGATCTTGCGTGCTTTAAGACACCTGTAGACTGCATCATATATGATATTTGCTACAAATCATAAATATGTGATGGAAATACACCTACAGGTATGATAAAGGTGGACACTTTTTCTTACCTTCATATGTCATGCGTACTCATGGATCAAGTAGGCAACAAGATGCCATGAAGAACATTTCTGGGAAACAGATGCAGAAAGTATTTGAGGTTTGACACCTTGAATTCCCCTTTTTAACGAACATGAAATTAGTTTGTTGCACATCTGACATTTTAGCAGTTTTCTTCACGACATATAACAATATTTTGGTGCTTCTATCACACATGTAGTTAAGTCAACCTGATAATGCGTTGAAATGGGTTGTTTACAGGCGCTGGATATGCTAGGGAGCACCAAGTGGAGGGTGAATAGAAGGGTACTCAGTGTGGTGGAGAGTCTTTGGGCTCAAGGAGGCAATACAGCAGGCCTTGTTGATCGCAAAGATGTAAACTCATGATACTCCAAAGCCATTCCAACAATTATTAATTCTTGTGTACCTGTATTCTCCTTAATATCATATTGAATGATAGGGTAGCGGTAACAATATAGTCAAACTTAATGCTAACTTGGATTTCCATTCATAAGTGCCCACACTTCCACTTTTCATATTTTCTTGCCTAGGTACGCTTATGCTTACTAAATGATGAATATTCTACATAAATAAAATGTTATATAATGTGTACTTCTGATAAGAAAAAATGGTCCTTCGTGAATAAAATTCTTGGTTGTGTCATGATGGCTATTATTAGGACAAGGGTTCTGCATGATTTTCTGGTTATATGCTCCTCATGTGGTTAATTGCATTGGCAAGTAGGTTCCAATTCCAGAGAAGCAACTTGGGGATTTGACAGAAACGCAAGAATGGAGATGGAGCATGAAGAAGGCAAAGAAAATCAACCAAGAGTTGCATTCCCAACGATGTGATGTTGAACTTAAGCTTTCGGTAAGATTTATTTTCTAACAACTTTCCTCTAGTTGAAAAGTGCATATGTTACCTAGCTAAGAAGCACGGGTATGAACAAGACACGACACAACACAAGGATGTCCTAATTTAAAACACTAGGGCACGAGCTTTTTGGGAGACACTCTTTTTAATTATTTTCTTTTAGGAAATATACATATTTTACATAAAATACTACATGCACTCCACCTAAAAAAGCATAAATTGTCTAGTTAATTAACAATTGTAGGAGACAAAACTTTAGGTTTCTATATATGTGTGTGTGTGTATGTTTCTTTATCTTTGATAAAAAAAGTGGGATTTTCTTTTATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATCATTATTTATCTTAGTTTAACGTGTAATTGATTTGAGCTTTAAATTTGGACCCAACATAAAAGGTTGGACGATTTTTTATTTAAAAATTTATTTCCATCTGAAATGTGTCCCCACGTGCATAAACTTTTTTATTTTAATTTAGATACGAATCATTTCTTTGGTAAATGATTTAAGGGGAAACTCCTACACCAATAGGTGATTACAAAAATGATTTCCAATTGGAAACTAAATAAGTTAAAATAAACAAATATGTTCTTAGCTGCCTAATAGATGAATAATTTGAAGGGGATACTAACAACAGTCCTTAAATCTGCTTAGTGATTTTCATCCACTTCTATCTTAAATTTTAAGAATAAATATGAGTATCACATGTATATGCTTACTTTTCATTGTTGTGGACAATTATTCAAAATAGCATTAACCGGTTATTTGTCATGAGTTAGGTTGCTCGCAAAATGAAGGATGAGGAAGGCTTTTATTACCCTCATAATGTTGATTTTCGTGGCCGAGCTTACCCAATGCATCCACATCTAAATCATTTGAGTTCTGATCTATGTCGAGGAGTTCTCGAGTTTGCTGAAGGGCGGCCTTTAGGAAAGTCTGGTTTGCATTGGCTAAAGATACATCTAGCTAATTTGCATGCTGGTGGCGTTGAAAAACTTTCCTATGACAGACGTCTAGCATTTGTGGATGACCATCTGGATAACATATTTGATTCTGCAAGTAACCCAGTCAATGGGGATCGTTGGTGGTTAACTGCTGAAGATCCTTTCCAATGTTTGGCTGCTTGTATGAATCTATCCGAAGCCCTAAAGAGCTCAGCACCACACACTGTCATTTCCTATCTGCCAATCCATCAGGTGGTATCCCTTTAGTTTTTCTTTTCCCTCGGATACAACTTTCACATCTACGTATAATCAGTTTTATGACCTTCTGTCTAAATAATCTGTTGGATGCTTAAAAAAACTGTTGGATGATTTCTTATCCTTGTGTTATAAACATCTTTTTCTCATCATTCTTCTTTTTCTTGAAACGGAAACAAGCCTCTTTCCTCTTTATTTATAGCTCAAAGTACAAGAATGTTATACTAAGAACAAGAGAAAGAGAAGAATTCAGTCAAACTATAACAAAAGCTAAACTTAGGCAAGAAAGGAGATGATAGGCTAAAAAATGAGTTCCAACGGAAAATGATCAAGTAAACAGAACCACAGTCATAGAAATCTAAATACAAAGCATAACGAAAACTCTCCCTCATAAGGAACCCATTTGAATCTACAAACTTGCAAGAAGATGTAACTAGCTGTCTCGTAACTGACTTGCCATAGTAACCCAAAATCCAGAGGAAGCTTGAGAAAGTCTTTCAAAACATCAGCATCAGCATAGAGGCTTTACTTTCCCATCATTCTTCTTGAAGTTAAGTATATTCCTGTACAAGACGTTTTTCCACCTCATTCCTTGGCTTGTCAATTTTCATCAAGGAAAATCATCCATACGTGTATCTTTATTTGAAATAAGCTGTCATTCGTCATTCACAGTTTTTTTTTATTGAATCTCATACATCTAGGGAGGGAGTACATGGCAATACCCCTGACCCAAGCTCACTCTGACCAATTTTTTCTTGATTATTTACTGTCTTTATTTGAACTAGATATCTATTATCTTTTGTACATTACTTGAGACATCTGTTTATTCATTTGAGCAATGTAATGACAGTTTAAAAGTCATAATTTTTCAGGATGGGTCATGCAATGGCTTACAGCACTATGCAGCTTTGGGAAGAGACACTGTAAGGCCAAATGATCTCTCCCTTCCTTATATTCCTGATTGATTATTTTTTTAACAAGAAACAAACATTTAATTGGTATTTAATTTTTATAATGTAAAGAGTAAGAGTTCAAAGAGATACAAACTTACTACATGTGAGAGAGTGAAGAAGAGCAAAAAATTTAAAAACATTACATTGAACGAACGAAAGTATCCCAATTATTACAAATATTATTAGGGGAATAAGACTCAGGAATTGCCTTAAACTTGACAATTCTAAACAATCCTCCCAAGGTTTGCTCTTGCCTTTGTCATACGATAATCATGAAGATATGACTTTGGTTGCATTTGCGTTGCCCATAAGATTCCTTCCTTATTTTATGATTGCTCTTACAAGAAATTGAAATTACTATCAGTAATTCATCAACTTCTTCGTAAGTCATCAAATAATATGTTTAGTGGTGGTGAATTATAATGTGACTATATCAATATTTCCCTTTGGGCTTCAAAGTTTATTCTTCTGTCTTTTATTAGTAATTCTGTTCTTTTTCAGCAATTTTTGCCCTTTTTCTCACTAATTTTTCATTTATAGTTTATGAAAATTAAGGGACCAGATAGCTTAGACAGTTTTTGTTTTTGATTTAACAAGAATTGTCCCATTTGATCTCGTCTCCATGTATTAGTTTCCAATGCTGTAAAGGCTTTATGTTAGCCTTGTTTGTCTTGATTTCATAGTTTGTGGGAAAAGATGAGGGTCCTATGGGAGTGCCAACTTTATTGAGATGTCTGGGTGAGCCTACTTTAGGATGCTCATTATGTAATTCTCTTGTATTATGAACTTTCATCTTATTATTAGTCAATAAAAGAAACTTGTTTTCCTCTCAAAAAAAAAAAAAAAAAAAGGAAAAAGAAAAAAAGAAATAAAGAAAGAAAAAGAAAAAAGAAAAAAAGAAAAGGAACCAGGTTGCAATAAATGGTCCTTCTTTCATTAGGATGTGCATGTATGATCTATCACACGAGTCTCTTATTATCAATTTCACATGTGGACTTGCTGATGTTGAAATTTTAGATTCTAAAAGAGTATGTTTATGGATTTCCAGTTGGAAGCAGCGGCTGTAAACTTAGTTGCTGGAGAAAAACCTGCTGATGTTTACTCGGAAATTGCTGCCAGGTATGTTAAGTCTTAGTCATCACTGGAATCAATTAGCATTGTACTTTTGTGTTACCGCAACTGACATATCAATGCCATATATATAGATATATATGTTTTGGAAGGAGAAATATGAGAGACTATTCATTGTATGACTTCTAAAAGTTCTATATCTAATATGTCCTTTTGGTTAACAACTTAACACCAATTGGATGATTATTTTACTTTGACTTGTTCTGTTTATTGTTTCAACCATCCTTTTTCCATACTTTTGCTGGCTTTCCAAAGAACTTCTAAAGATGTGCGGGGTCTAGGGAATTCCTGGGATTTGGTTAGTTTTCTAGTGTTGAGACAGTGCATCCTTTAATCATCTTTGTAATTTCAACTCTCTTCCAATTTAGCCAAGTCGGGAGTCCTTTGTAGAACTTTCTCAGTTGGGAGATCGGTTGTCTTTTTTTTTTTTTAGTACAAATTGTGGGGGTGTGGGGATTTGAACATAGGACCTCTTGGTCTTCAATACATACACTAGCTAGTCGAGCTAAACTTTTATACAACTTCTTTAATAAAATTCCATTTCTTACGAGGAAGAATTAATGGTTGGCTACCTATCCGTACAAGATCAGATTAAATTTAATACCTTTGAGAGGGCTTCGGTTTCTAAGATTTTATATATGTTGGTGAAAATGTATGTGTCCACTCTTGTTTTACTTCTATTACTGGTCAACAGGGTTCACACTATCATGATCAGGGATGCTAACAAAGATCCAACGACAAATCCAAATGCTTCACTGGCTAAGCTCCTCATTGATCAGGTTTTTCTTTCTTGGCTTATCCTCCAAGCTGCAGTTTAGTTTCCGCTAGAAAATGGATATTTTATGAAGATGCTCATTTTTTAACTTTTTTCTTGTCCAGACTTACACTTTTTGAACTAGTTTATCTTTTGAGATTTTCAGGTTGATCGCAAACTGGTAAAACAGACAGTGATGACTTCTGTATATGGTGTCACATATGTTGGTGCTCGTGAACAAATTAAAAAAAGACTAGAGGAGAAAGGCCTTATATCTGATGATAGACTACTATTTAGAGCATCCTGTTATGCTGCTAAAGTAAGTAGCTAACTAATATGTGATCAATTACATTCTGATATGGATAAATTACCTTTTTTATTTTTGAATTGTAATTTCTTTCATGGTTGATCAGAATATAAGACTTTCTTTGAACCTCATCATAGGGAATATTTAGTAAAAGAGAGTCAAGATAAGTCAACAGTCTTAATTTGTCTGCGTGTAACATTGACAGCCATAACTTTTTTGTGTTTTTGCTAGCTTACAAGAGTTTCAATACTAGGATAAACCCCCCAAAAGAAGAAGAAAGTGAGAGAAAAATAATTCACCTAGGCTGTAGAGGATATATCTCCACATAACAGTCTCAAATTTTATCTTAATTATACTTTGGGGAAGTTTCTCTTACTCTCCTTGCTGTTGGAGTCCTTATGCTCGTCTCCCCAAAATCCTGTCCAGTGGTTTTGTGATAAAGTGAGATTTACACAAGGAATATGAGTCAGTGCTAAGGATTTGTCTTCTCTGGTTGGAGAGAGATAACAGAATCTTTCAAGATTAGTTTAGACTTTAGAGCTACTGGAGTTTGTTTGTATGTGTGTGTTTACTTTGCAGCATACTGCCTCCCAATTGGAGGGTATACTAGGGGAGTTTTGTAACTTTCCCTTTTTATTTTATTGACCTTTGGATTTCTATCTTTAATGCCCGGTGGATAGGTTGAGGAGGGGTGTTGTTTTATCTCCTTGGTCATTACTTTTCTACCTCTTCCTTTAGTAAATGGGAATTGTTTCTTTCCTTCTTTCCTTTTTTTTTTTTTTTTTTTGCAAAATGGTCATCATTTATAATATTATTGTACCCTTTTCCATAGGTGACGTTGGCTGCGCTTGGAGAGATATTTGAAGCCGCACGTGGAATAATGGGTTGGCTTGGTGATTGCGCTAAGGTATACCATTCTGTTGTGCTATGGGCAGTAGGCTACTTGCTAGCTACAAATGACATAATTTGGGCATTTCTTTTAACTGTCACTTGAAGTTTTGATTTTTAAATTTGTCTTTCTTGAAGGTAATTGCTAAAGATAATCAGCCTGTGCGTTGGACCACTCCTCTTGGTCTCCCTGTGGTACAACCATACTATAAAAGTGAAAGGCATCTTGTGAGTAACTGCTTTGCTGAATCTTTTTCCAGAAATGAAACCAACTTTTGATTGGAAGTATGAAAAGTAGTCTAGGACTCAAGAGGTGGGAGCACCTTCATCCAAAGGAGCTTATAAAAACCCCACTTCAGTTGATAAGAATAAAAATAAAAATAACAAAAGTACAAAATACCAAATGGAATCATTCAAGTCCCTTTGGGAACATCAGATAAAATTGGACAAAGTGGAGCTATTCAAGATGAGAGAGAAAGTTCACCAAGAAGACCTAAAAAACTTGACACTTCCCTGAATACCCTCCCAACTCTTACTACTTAGTATTTCCTTTAAATAAACTATTTTCTCTGACCTCTTTAACCAACTTTTTCGTAGTTGTGCCTGCACTAATCACTGCACATGACCTCAGCACCTTTCTTTCTTTTTAAAAGGAGTACCACATAGGATATATTAGATATTTGCTCGAGTGGCCATGCACCAACTCAAACCAAGCTCTACAGAAATCTTATTCCAATTCCAACAACTACGGTACGTTTACAGCTGAAGAACAGGTAAGAGGTGATTCACACTTGTAGTAAGTTCTGGCACAAGACACTCCCTATTCTTCTAGATGGACATGATGTGTTTCTCAGGAGAGAGAATCCATTTGGTTTTTAGTGATAGAATATATCGGTTGACCAGCCTCTTAAGTTTGCTCTCCCTAGGATTTTCACTATTACGACTATTTGAAAATTATTGGATATCTCAACGCTTATGCCCTCAATTCACGGAGACTAGAAGTTGTTCATCAAAAGTGACTAGAATATCTTTCGGACTGTTTCTTGAGGCCCCAGGATTCTAATAGGCACTATTTTCAAATTTAAAATAGATGACCATCATTTCAGCCCTTTTATTCCTCCATTTTTGAGTGAAACTCCTGGAAATTTTACATTGCTGTCCTCTTTTTTCTCCTCTCCAGCCATTAGCGTACAGAACCCTGGTGTAACGGGCACAAGATTTTATGGCGTTGGTGCTGCAGAGTTGGGAGGATAATGTTTTTAGTTCCTAAGCATTTTAAATTCAGTTATTTGTGCTTGGTACATGTAAATACTCGTATACTCTGGCCTAATAACCGTGGTCGATAATTATCTACAATCTGCCTGCAATCATCCTCGTTAATAAATCTTTCATACGACTCATTAAAGGAAGACACAATCATCAGTCTTCTCTTTGTGCTGCAGATTAGGACATCTCTTCAAGTTTTGGCTTTACGACGAGAGGGTAACTCGGTAAGCCTATGTCACTGGTCTTGAATCCCATGTTATTCTCCAGATTTTCATTGAGCTTATTTGACTGTTACATTGTTTCCAGGTGGATGTTAGAAAGCAGAGAACTGCATTTCCTCCCAATTTTGTGCACTCTCTGGATGGTTCACATATGATGCTCACTGCTCTTGCCTGTAGGGATGCTGGCTTACGTTTTGCAGGTTAGTTTTTCCACTTTATCAGAACGGATCCCTGACCATTGAATAATCTTTGCACTGGGGAAAAAAATTGTCAATTTGCACTAACTCGAAGATATGCCATAAACTTGGTGGATAAAGGCATTAACTCAATCATTTAGAGGAGTGGTCTTACTAGACTTTCATTTTCTTGGTGGTGTGGTTTTCAATTTTTGGTGGTGTGGTTTTCAACTAAAGCGTTGGAAGATTCTTTAACTACTATGGACCTTATTAAATTATTCCTCAAACAGTTTCTCTATCAATAAATATTTGACGTCAGTATTTATATAGAATATCCAGTAAAGAAAATGAGAAGTTGAACAACAAACAAGGTGCACAAGAAACAGCGTAAATTATTGTTTTAAGTTGTCACAAATAAATGTTAATTCAATTTCATCTCTAATGATTTTTGAGAACAATAACTTTCTAGAACTAAAATCTGTTGATGTACTCTCAGTCTCACCTCACCAAGCCAAGTACTTCTGTTTCAGGGGTGCATGACTCCTTCTGGACACATGCGTGTGATGTAGACCGGATGAATCTGATACTAAGGGAAAAATTTGTGGAGCTTTATAGTATGCCAGTTCTTGAAAGTGTAAGTATGCTGTTATTAAGTTTCTAAATGCGAAGAAATTCTACCAGCAATTAAGAAATTTGGTTTTTATTCAATCTATTACTGAGTACAAACAAAAAGACCACTATGCCTACATGTATCTTGTGTCTTCAGTCCCTATACTTCCAAAAGTTATATTTTGACCTCTTTCGTGTCAAGTATTTCCACCTCTCTACCCTTGTATTAGACCTATTCTGCATATATTTCTCAGTAATAATTTTTTCCAAAATCAGCTCATTGCCCACCTTACTATTTTACACAAGTTAGGGTTTTGCGGAATCTTTGGAAAGAAAGAAAGAAACAGTAGGACCTTAAGATAAGTGCTGTTATTTAGATTCTTTTTGTCTAAATGTGCAACTTGATGCTTCTTGGCAGTGCACAATTCTCGCAAAAAAATTTCTTTTGTGATTATAGTCTTGCCATCATTATATAATTGGAAGGCTGTAATATAGTCTTGCTTTAGAAAGATATTCTCTAAATTACTCATTCATAAACTGTCTAGCCTCTGCCTTCAATTGATATGATTTATACATGTTTTTTAACTTGTTAGTTTGAATTTATTTATTTGTTTGTTTTTTCTGATCACTGTGATTGGTAGGAATGGAAGCGTAAATGCTAAGTACGGATACGGTTACAACACAAACATGACAACACACCATTTTTGAAAAAACTAGGACACAGACATGATAAGGGCACATTTGTGAAAATCTACATTTTCTAAAAATATATATAGTTCTTATACTAGAATAAATTCAAAGAAATGGGTTGATGCATATATGTTCTTAAAAAATTAGTTGATGTATTTTATACTCAATTTATTATTATTATTAGGTGTCTTTTAGCAAGTGTTCTATTCATGTTTGATATATTTGTTACATTAACAATTGTTGTGGAGACAGTGTGTCCTTGCTTCCTAGTGTAAATGTAATAGAACTTGATATAGTTTACACTTGTCTCTTTACCTAGTTTTGATTTTTGGATTTTTTTTCCTTGAATTTAGATCAACTAACTGTTAGGCAAATTATAAATCTTAAAGAGCTATTTTGTTTTCTTGCCAGTTGCTTGAAGGCTTTGAAACGACATATCCAGGATTGACATTCCCTTCCCTCCCTGAGAGAGGCGATTTTGACTTGCAAGAGGTTCTTAGATCCCCTTACTTCTTCAACTGATTCTCCTGAACTCAACAGCAGGCATGACATTCTGCAGAAACAAACTTAGTAAAAACATGTATAGGAAACAATTTTGAGAAGTGGATGTAAGACTGATACAAGAGACAGGAGCGAAGCCCAGAGCCAATTCGATCATGTCAGCAATGGTGAAACCATTCCAATTCGTTGCTCATCTCTTCAAGCTCTGCAGTCCTGTCAGCACACTCTAAATATCCTGCTGTCAAGGAAATAAATGTTTTCTCAGGTTGTCTTTGTAGCAGAACTTGATGGATACTTGTGCAATCTGTGAGCTAACAATGATTCAGCCGAGACCGAAACTCGAGCAGGCATCTTGTAGTTGGCAGCATTTTTTATCTGGCTTCTGACTTTGAGGGTTCATTTTCCTACAGATGAGTATTCTTTTCCCCCCCACATCTACTGTATAAACCTTTTTTAGTATCAATTAGAAAGGAAAAGTAAGCTATTTGTTAGAAGCCTTTATTTTCACTTAAGGAATGTAATCTAAGCTTTTAGAAGCCTTCATTTTGTCCGTG

mRNA sequence

AAATAGCAAGAGGTTTAAGAAGGGGTTTCATCGTTCTTACTCACATACACAACGCTGTCTCTTCCTCAATGCCTTAATTTTATCTTCAAAAGAAATGACGACCACGGCCTCCTTCTTCCCAACTCTTCAAGCTCCAATTCATGGCAGCAATGCATGGAAGAAACCCACCAAGAGATGGAAATGCGAAAGAAAAACCCAAACATCATTTACCTCAACCTTCAATTCTTCTCTTTCTTCTGTTTCTTTCCCGATAAACTTCGATTCCACTTCCCAACCATTCCATCTTCAACCTCTAGCTGATTCAGTTCATGAAAATTTCACAGAAACTCTCGATAATTCCATGAATTTGCAGATACCCACCAGCGAAATTCACCAGATAACTCGAGGGGAATCTGGTCAAAGAATCTTCATTCAGGATCCACCATGGATAGCTTCCCTGTTCTTGAAGGGGCTTTACAAATGCGTTCAGAAGGAAGTGAAATTAGAATTTATGAAAATTGAGAAGAGGAAGTATAATTTGCTGAGAAGGAGACAGATTAAGGCGGAGACAGAGGCTTGGGAGAAGATGGTTAAGGAGTATAAGGAGTTAGAGAGAGAAATGTGCGAGAAGAAATTAGCGCCGAATTTGCCTTATGTGAAGACGTTGTTTTTGGGTTGGTTTGAGCCATTGAAGCAAGCCATAGAGAAGGAGCAAAAAACGCAAAGGAGTAAGAAGCAGAAGGCGGCATTCGCACCTCATATAGAGTTATTATCTGCAGATAAACTAGCGGTTATTGTGATGTACAAGATGATGGGATTGTTGATGGTGGCGCAGCAAGATTGCTGTGTTCAGGTCGTTCAGGCTGCGGTCCAGATTGGTGGTGCTATAGAGCAAGAGGTTAGAATTCAGAGCTTTCTGGAGAAGGCTAGGAGTAATCAGAGAACAAAGGTCCCAGCAGATACTGAGTGTTTGAGCAAGGAGAAAGAGGTATTGAGGAAACGAGTTAATGGTTTAATTAGGAGAAGGAGGCTGAAAGAGGTGCAAAAGTTGTTGAAGAAAGAAGAATTTAAGGCTTGGGGTCGAGACACCCAAGCTAAGCTAGGAAGTCGTCTCATAGAATTGTTGATTGAATCAGCTTTCATTCAACCTCCAGTTAGCCAGTCAGCTGACAGTCCACCCGATGTCCGACCTGCATTCTGGCATGGGTTTAAACCTGTTGCAAAAACTCCAGGGCAGAATTTTGTGAAGAAATATGGAGTTATCGAATGTGATCCCATAGTTCTTGCTGGGCTTGACCAAACTGCTAAGCATATGTTAATTCCTTACATCCCTATGTTGGTTCCTCCTAAAAAATGGAAAGGGTATGATAAAGGTGGACACTTTTTCTTACCTTCATATGTCATGCGTACTCATGGATCAAGTAGGCAACAAGATGCCATGAAGAACATTTCTGGGAAACAGATGCAGAAAGTATTTGAGGCGCTGGATATGCTAGGGAGCACCAAGTGGAGGGTGAATAGAAGGGTACTCAGTGTGGTGGAGAGTCTTTGGGCTCAAGGAGGCAATACAGCAGGCCTTGTTGATCGCAAAGATGTTCCAATTCCAGAGAAGCAACTTGGGGATTTGACAGAAACGCAAGAATGGAGATGGAGCATGAAGAAGGCAAAGAAAATCAACCAAGAGTTGCATTCCCAACGATGTGATGTTGAACTTAAGCTTTCGGTTGCTCGCAAAATGAAGGATGAGGAAGGCTTTTATTACCCTCATAATGTTGATTTTCGTGGCCGAGCTTACCCAATGCATCCACATCTAAATCATTTGAGTTCTGATCTATGTCGAGGAGTTCTCGAGTTTGCTGAAGGGCGGCCTTTAGGAAAGTCTGGTTTGCATTGGCTAAAGATACATCTAGCTAATTTGCATGCTGGTGGCGTTGAAAAACTTTCCTATGACAGACGTCTAGCATTTGTGGATGACCATCTGGATAACATATTTGATTCTGCAAGTAACCCAGTCAATGGGGATCGTTGGTGGTTAACTGCTGAAGATCCTTTCCAATGTTTGGCTGCTTGTATGAATCTATCCGAAGCCCTAAAGAGCTCAGCACCACACACTGTCATTTCCTATCTGCCAATCCATCAGGATGGGTCATGCAATGGCTTACAGCACTATGCAGCTTTGGGAAGAGACACTTTGGAAGCAGCGGCTGTAAACTTAGTTGCTGGAGAAAAACCTGCTGATGTTTACTCGGAAATTGCTGCCAGGGTTCACACTATCATGATCAGGGATGCTAACAAAGATCCAACGACAAATCCAAATGCTTCACTGGCTAAGCTCCTCATTGATCAGGTTGATCGCAAACTGGTAAAACAGACAGTGATGACTTCTGTATATGGTGTCACATATGTTGGTGCTCGTGAACAAATTAAAAAAAGACTAGAGGAGAAAGGCCTTATATCTGATGATAGACTACTATTTAGAGCATCCTGTTATGCTGCTAAAGTGACGTTGGCTGCGCTTGGAGAGATATTTGAAGCCGCACGTGGAATAATGGGTTGGCTTGGTGATTGCGCTAAGGTAATTGCTAAAGATAATCAGCCTGTGCGTTGGACCACTCCTCTTGGTCTCCCTGTGGTACAACCATACTATAAAAGTGAAAGGCATCTTATTAGGACATCTCTTCAAGTTTTGGCTTTACGACGAGAGGGTAACTCGGTGGATGTTAGAAAGCAGAGAACTGCATTTCCTCCCAATTTTGTGCACTCTCTGGATGGTTCACATATGATGCTCACTGCTCTTGCCTGTAGGGATGCTGGCTTACGTTTTGCAGGGGTGCATGACTCCTTCTGGACACATGCGTGTGATGTAGACCGGATGAATCTGATACTAAGGGAAAAATTTGTGGAGCTTTATAGTATGCCAGTTCTTGAAAGTTTGCTTGAAGGCTTTGAAACGACATATCCAGGATTGACATTCCCTTCCCTCCCTGAGAGAGGCGATTTTGACTTGCAAGAGGTTCTTAGATCCCCTTACTTCTTCAACTGATTCTCCTGAACTCAACAGCAGGCATGACATTCTGCAGAAACAAACTTAGTAAAAACATGTATAGGAAACAATTTTGAGAAGTGGATGTAAGACTGATACAAGAGACAGGAGCGAAGCCCAGAGCCAATTCGATCATGTCAGCAATGGTGAAACCATTCCAATTCGTTGCTCATCTCTTCAAGCTCTGCAGTCCTGTCAGCACACTCTAAATATCCTGCTGTCAAGGAAATAAATGTTTTCTCAGGTTGTCTTTGTAGCAGAACTTGATGGATACTTGTGCAATCTGTGAGCTAACAATGATTCAGCCGAGACCGAAACTCGAGCAGGCATCTTGTAGTTGGCAGCATTTTTTATCTGGCTTCTGACTTTGAGGGTTCATTTTCCTACAGATGAGTATTCTTTTCCCCCCCACATCTACTGTATAAACCTTTTTTAGTATCAATTAGAAAGGAAAAGTAAGCTATTTGTTAGAAGCCTTTATTTTCACTTAAGGAATGTAATCTAAGCTTTTAGAAGCCTTCATTTTGTCCGTG

Coding sequence (CDS)

ATGACGACCACGGCCTCCTTCTTCCCAACTCTTCAAGCTCCAATTCATGGCAGCAATGCATGGAAGAAACCCACCAAGAGATGGAAATGCGAAAGAAAAACCCAAACATCATTTACCTCAACCTTCAATTCTTCTCTTTCTTCTGTTTCTTTCCCGATAAACTTCGATTCCACTTCCCAACCATTCCATCTTCAACCTCTAGCTGATTCAGTTCATGAAAATTTCACAGAAACTCTCGATAATTCCATGAATTTGCAGATACCCACCAGCGAAATTCACCAGATAACTCGAGGGGAATCTGGTCAAAGAATCTTCATTCAGGATCCACCATGGATAGCTTCCCTGTTCTTGAAGGGGCTTTACAAATGCGTTCAGAAGGAAGTGAAATTAGAATTTATGAAAATTGAGAAGAGGAAGTATAATTTGCTGAGAAGGAGACAGATTAAGGCGGAGACAGAGGCTTGGGAGAAGATGGTTAAGGAGTATAAGGAGTTAGAGAGAGAAATGTGCGAGAAGAAATTAGCGCCGAATTTGCCTTATGTGAAGACGTTGTTTTTGGGTTGGTTTGAGCCATTGAAGCAAGCCATAGAGAAGGAGCAAAAAACGCAAAGGAGTAAGAAGCAGAAGGCGGCATTCGCACCTCATATAGAGTTATTATCTGCAGATAAACTAGCGGTTATTGTGATGTACAAGATGATGGGATTGTTGATGGTGGCGCAGCAAGATTGCTGTGTTCAGGTCGTTCAGGCTGCGGTCCAGATTGGTGGTGCTATAGAGCAAGAGGTTAGAATTCAGAGCTTTCTGGAGAAGGCTAGGAGTAATCAGAGAACAAAGGTCCCAGCAGATACTGAGTGTTTGAGCAAGGAGAAAGAGGTATTGAGGAAACGAGTTAATGGTTTAATTAGGAGAAGGAGGCTGAAAGAGGTGCAAAAGTTGTTGAAGAAAGAAGAATTTAAGGCTTGGGGTCGAGACACCCAAGCTAAGCTAGGAAGTCGTCTCATAGAATTGTTGATTGAATCAGCTTTCATTCAACCTCCAGTTAGCCAGTCAGCTGACAGTCCACCCGATGTCCGACCTGCATTCTGGCATGGGTTTAAACCTGTTGCAAAAACTCCAGGGCAGAATTTTGTGAAGAAATATGGAGTTATCGAATGTGATCCCATAGTTCTTGCTGGGCTTGACCAAACTGCTAAGCATATGTTAATTCCTTACATCCCTATGTTGGTTCCTCCTAAAAAATGGAAAGGGTATGATAAAGGTGGACACTTTTTCTTACCTTCATATGTCATGCGTACTCATGGATCAAGTAGGCAACAAGATGCCATGAAGAACATTTCTGGGAAACAGATGCAGAAAGTATTTGAGGCGCTGGATATGCTAGGGAGCACCAAGTGGAGGGTGAATAGAAGGGTACTCAGTGTGGTGGAGAGTCTTTGGGCTCAAGGAGGCAATACAGCAGGCCTTGTTGATCGCAAAGATGTTCCAATTCCAGAGAAGCAACTTGGGGATTTGACAGAAACGCAAGAATGGAGATGGAGCATGAAGAAGGCAAAGAAAATCAACCAAGAGTTGCATTCCCAACGATGTGATGTTGAACTTAAGCTTTCGGTTGCTCGCAAAATGAAGGATGAGGAAGGCTTTTATTACCCTCATAATGTTGATTTTCGTGGCCGAGCTTACCCAATGCATCCACATCTAAATCATTTGAGTTCTGATCTATGTCGAGGAGTTCTCGAGTTTGCTGAAGGGCGGCCTTTAGGAAAGTCTGGTTTGCATTGGCTAAAGATACATCTAGCTAATTTGCATGCTGGTGGCGTTGAAAAACTTTCCTATGACAGACGTCTAGCATTTGTGGATGACCATCTGGATAACATATTTGATTCTGCAAGTAACCCAGTCAATGGGGATCGTTGGTGGTTAACTGCTGAAGATCCTTTCCAATGTTTGGCTGCTTGTATGAATCTATCCGAAGCCCTAAAGAGCTCAGCACCACACACTGTCATTTCCTATCTGCCAATCCATCAGGATGGGTCATGCAATGGCTTACAGCACTATGCAGCTTTGGGAAGAGACACTTTGGAAGCAGCGGCTGTAAACTTAGTTGCTGGAGAAAAACCTGCTGATGTTTACTCGGAAATTGCTGCCAGGGTTCACACTATCATGATCAGGGATGCTAACAAAGATCCAACGACAAATCCAAATGCTTCACTGGCTAAGCTCCTCATTGATCAGGTTGATCGCAAACTGGTAAAACAGACAGTGATGACTTCTGTATATGGTGTCACATATGTTGGTGCTCGTGAACAAATTAAAAAAAGACTAGAGGAGAAAGGCCTTATATCTGATGATAGACTACTATTTAGAGCATCCTGTTATGCTGCTAAAGTGACGTTGGCTGCGCTTGGAGAGATATTTGAAGCCGCACGTGGAATAATGGGTTGGCTTGGTGATTGCGCTAAGGTAATTGCTAAAGATAATCAGCCTGTGCGTTGGACCACTCCTCTTGGTCTCCCTGTGGTACAACCATACTATAAAAGTGAAAGGCATCTTATTAGGACATCTCTTCAAGTTTTGGCTTTACGACGAGAGGGTAACTCGGTGGATGTTAGAAAGCAGAGAACTGCATTTCCTCCCAATTTTGTGCACTCTCTGGATGGTTCACATATGATGCTCACTGCTCTTGCCTGTAGGGATGCTGGCTTACGTTTTGCAGGGGTGCATGACTCCTTCTGGACACATGCGTGTGATGTAGACCGGATGAATCTGATACTAAGGGAAAAATTTGTGGAGCTTTATAGTATGCCAGTTCTTGAAAGTTTGCTTGAAGGCTTTGAAACGACATATCCAGGATTGACATTCCCTTCCCTCCCTGAGAGAGGCGATTTTGACTTGCAAGAGGTTCTTAGATCCCCTTACTTCTTCAACTGA

Protein sequence

MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQPFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLFLKGLYKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQQDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPAFWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWAQGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLISDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERGDFDLQEVLRSPYFFN

Homology

[Close]

BLAST of IVF0006141 vs. ExPASy Swiss-Prot
Match: P69243 (DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPOT3-SYL PE=3 SV=1)

HSP 1 Score: 1374.4 bits (3556), Expect = 0.0e+00
Identity = 687/995 (69.05%), Postives = 824/995 (82.81%), Query Frame = 0


Query: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCER----------KTQTSFTSTFNSSLSSVS 60
           M +TAS+ P+             PT +W+ ++            Q     + +SSL + S
Sbjct: 1   MASTASYSPS-------------PTSQWRTQKLPKRFNFYVIHNQEFGKLSQSSSLPTSS 60

Query: 61  FPINFDSTSQPFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRG----ESGQRIFI 120
           FP    +   P    P+ +++    T  +    NL+     + +I  G    ES +R+FI
Sbjct: 61  FP---KTLKLPVIQMPINNNIQSQTTVCVSTDENLE-ELVNLQKIANGVLTKESNKRVFI 120

Query: 121 QDPPWIASLFLKGLY---KCVQKEVKLEFMKIE-KRKYNLLRRRQIKAETEAWEKMVKEY 180
           QDPPW++SLF+  L+   K VQ  V+ EF +IE +R+Y +LRRRQIKAETEAWE+MV+EY
Sbjct: 121 QDPPWVSSLFMNSLFVRAKQVQ-GVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEY 180

Query: 181 KELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSAD 240
           +ELEREMCEKKLAPNLPYVK L LGWFEPL+QAIEKEQ  + + K +AAFAPHI+ L AD
Sbjct: 181 RELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPAD 240

Query: 241 KLAVIVMYKMMGLLMV-AQQDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPA 300
           K+AVIVM+K+MGLLM+  +++ CVQVVQAAVQIG A+E EVRI +FLEK +  Q+    A
Sbjct: 241 KMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGA 300

Query: 301 DT-ECLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIES 360
            + E +S+E  +LRKRV  LI+R R+ EV+KL+K EE ++WGRDTQAKLG RL+ELL E+
Sbjct: 301 QSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTET 360

Query: 361 AFIQPPVSQSADSPPDVRPAFWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHM 420
           A++QPPV QSAD+PPD+RPAF H F+   + PG++ VKKYGVIECDP+V+AG+D+T K M
Sbjct: 361 AYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQM 420

Query: 421 LIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDML 480
           +IPY+PMLVPPKKW+GYDKGG+ FLPSY+MRTHGS RQQDA++++  KQMQ+V+EALD L
Sbjct: 421 MIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTL 480

Query: 481 GSTKWRVNRRVLSVVESLWAQGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKI 540
           GSTKWRVN+R+LSVVES+WA GGN AGLVDRKDVPIPE    D+ E ++W+W ++K+KKI
Sbjct: 481 GSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMEVKKWKWRVRKSKKI 540

Query: 541 NQELHSQRCDVELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEF 600
           NQELHSQRCD ELKLSVARK+KDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRG+LEF
Sbjct: 541 NQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEF 600

Query: 601 AEGRPLGKSGLHWLKIHLANLHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWL 660
           AEGRPLGKSGL WLKIHLA+L+AGG+EKL YD RLAFV++H+D+I DSA+NP+NG+RWWL
Sbjct: 601 AEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWL 660

Query: 661 TAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNL 720
            AEDPFQCLAAC+NLSEALKSS+PHTV S+LPIHQDGSCNGLQHYAALGRD++EAAAVNL
Sbjct: 661 NAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNL 720

Query: 721 VAGEKPADVYSEIAARVHTIMIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYG 780
           VAG+KPADVY+EIA RV  I+  D+ KDP T+PNA LAKLLIDQVDRKLVKQTVMTSVYG
Sbjct: 721 VAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYG 780

Query: 781 VTYVGAREQIKKRLEEKGLISDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAK 840
           VTYVGAREQIK+RLEEKGLI DDRLLF ASCYAAKVTLAALGE+F+AARG M WLGDCAK
Sbjct: 781 VTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAK 840

Query: 841 VIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNF 900
           VIA +NQPVRWTTPLGLPVVQPY+K++RH+IRTSLQVLAL+REG++V+VRKQRTAFPPNF
Sbjct: 841 VIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNF 900

Query: 901 VHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESL 960
           VHSLDGSHMM+TA+ACRDAGL+FAGVHDSFWTHACDVD+MN ILREKFVELYSMP+LE L
Sbjct: 901 VHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDL 960

Query: 961 LEGFETTYPGLTFPSLPERGDFDLQEVLRSPYFFN 976
           LE F+ +YP LTFP LP+RGDFDL EVL SPYFFN
Sbjct: 961 LESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977

[Close]

BLAST of IVF0006141 vs. ExPASy Swiss-Prot
Match: P69242 (DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=RPOT3 PE=2 SV=1)

HSP 1 Score: 1374.4 bits (3556), Expect = 0.0e+00
Identity = 687/995 (69.05%), Postives = 824/995 (82.81%), Query Frame = 0


Query: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCER----------KTQTSFTSTFNSSLSSVS 60
           M +TAS+ P+             PT +W+ ++            Q     + +SSL + S
Sbjct: 1   MASTASYSPS-------------PTSQWRTQKLPKRFNFYVIHNQEFGKLSQSSSLPTSS 60

Query: 61  FPINFDSTSQPFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRG----ESGQRIFI 120
           FP    +   P    P+ +++    T  +    NL+     + +I  G    ES +R+FI
Sbjct: 61  FP---KTLKLPVIQMPINNNIQSQTTVCVSTDENLE-ELVNLQKIANGVLTKESNKRVFI 120

Query: 121 QDPPWIASLFLKGLY---KCVQKEVKLEFMKIE-KRKYNLLRRRQIKAETEAWEKMVKEY 180
           QDPPW++SLF+  L+   K VQ  V+ EF +IE +R+Y +LRRRQIKAETEAWE+MV+EY
Sbjct: 121 QDPPWVSSLFMNSLFVRAKQVQ-GVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEY 180

Query: 181 KELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSAD 240
           +ELEREMCEKKLAPNLPYVK L LGWFEPL+QAIEKEQ  + + K +AAFAPHI+ L AD
Sbjct: 181 RELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPAD 240

Query: 241 KLAVIVMYKMMGLLMV-AQQDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPA 300
           K+AVIVM+K+MGLLM+  +++ CVQVVQAAVQIG A+E EVRI +FLEK +  Q+    A
Sbjct: 241 KMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGA 300

Query: 301 DT-ECLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIES 360
            + E +S+E  +LRKRV  LI+R R+ EV+KL+K EE ++WGRDTQAKLG RL+ELL E+
Sbjct: 301 QSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTET 360

Query: 361 AFIQPPVSQSADSPPDVRPAFWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHM 420
           A++QPPV QSAD+PPD+RPAF H F+   + PG++ VKKYGVIECDP+V+AG+D+T K M
Sbjct: 361 AYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQM 420

Query: 421 LIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDML 480
           +IPY+PMLVPPKKW+GYDKGG+ FLPSY+MRTHGS RQQDA++++  KQMQ+V+EALD L
Sbjct: 421 MIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTL 480

Query: 481 GSTKWRVNRRVLSVVESLWAQGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKI 540
           GSTKWRVN+R+LSVVES+WA GGN AGLVDRKDVPIPE    D+ E ++W+W ++K+KKI
Sbjct: 481 GSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIPELHSDDIMEVKKWKWRVRKSKKI 540

Query: 541 NQELHSQRCDVELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEF 600
           NQELHSQRCD ELKLSVARK+KDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRG+LEF
Sbjct: 541 NQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEF 600

Query: 601 AEGRPLGKSGLHWLKIHLANLHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWL 660
           AEGRPLGKSGL WLKIHLA+L+AGG+EKL YD RLAFV++H+D+I DSA+NP+NG+RWWL
Sbjct: 601 AEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWL 660

Query: 661 TAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNL 720
            AEDPFQCLAAC+NLSEALKSS+PHTV S+LPIHQDGSCNGLQHYAALGRD++EAAAVNL
Sbjct: 661 NAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNL 720

Query: 721 VAGEKPADVYSEIAARVHTIMIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYG 780
           VAG+KPADVY+EIA RV  I+  D+ KDP T+PNA LAKLLIDQVDRKLVKQTVMTSVYG
Sbjct: 721 VAGDKPADVYTEIALRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYG 780

Query: 781 VTYVGAREQIKKRLEEKGLISDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAK 840
           VTYVGAREQIK+RLEEKGLI DDRLLF ASCYAAKVTLAALGE+F+AARG M WLGDCAK
Sbjct: 781 VTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAK 840

Query: 841 VIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNF 900
           VIA +NQPVRWTTPLGLPVVQPY+K++RH+IRTSLQVLAL+REG++V+VRKQRTAFPPNF
Sbjct: 841 VIASENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNF 900

Query: 901 VHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESL 960
           VHSLDGSHMM+TA+ACRDAGL+FAGVHDSFWTHACDVD+MN ILREKFVELYSMP+LE L
Sbjct: 901 VHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDL 960

Query: 961 LEGFETTYPGLTFPSLPERGDFDLQEVLRSPYFFN 976
           LE F+ +YP LTFP LP+RGDFDL EVL SPYFFN
Sbjct: 961 LESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977

[Close]

BLAST of IVF0006141 vs. ExPASy Swiss-Prot
Match: Q8L6J1 (DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPOT3-TOM PE=2 SV=2)

HSP 1 Score: 1366.3 bits (3535), Expect = 0.0e+00
Identity = 689/995 (69.25%), Postives = 825/995 (82.91%), Query Frame = 0


Query: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCER----------KTQTSFTSTFNSSLSSVS 60
           M +TAS+ P+             PT +W+ ++            Q     + +SSLS+ S
Sbjct: 1   MASTASYSPS-------------PTSQWRTQKLPKRFNFYVIHNQEFGKLSQSSSLSTSS 60

Query: 61  FP--INFDSTSQPFHLQPLADSVHENFTETLDNSMNLQ-IPTSEIHQITRGESGQRIFIQ 120
           FP  +       P +      +V  +  E L+  +NLQ IP   +++    ES +R+FIQ
Sbjct: 61  FPKTLKLPVIHMPINNIQSQTTVCVSTDENLEELVNLQKIPNGFLNK----ESNKRVFIQ 120

Query: 121 DPPWIASLFLKGLY---KCVQKEVKLEFMKIE-KRKYNLLRRRQIKAETEAWEKMVKEYK 180
           DPPW++SLF+  L+   K VQ  V+ EF +IE +R+Y +LRRRQIKAETEAWE+MV+EY+
Sbjct: 121 DPPWVSSLFMNSLFVRAKQVQ-GVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYR 180

Query: 181 ELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADK 240
           ELEREMCEKKLAPNLPYVK L LGWFEPL+QAIEKEQ  + + K +AAFAPHI+ L ADK
Sbjct: 181 ELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADK 240

Query: 241 LAVIVMYKMMGLLMV-AQQDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPAD 300
           +AVIVM+K+MGLLM+  +++ CVQVVQAAVQIG A+E EVRI +FLEK +  Q+    A 
Sbjct: 241 MAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQ 300

Query: 301 T-ECLSKEKEVLRKRVNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESA 360
           + E +SKE  +LRKRV  LI+R R+ EV+KL+K EE ++WGRDTQAKLG RL+ELL E+A
Sbjct: 301 SQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETA 360

Query: 361 FIQPPVSQSADSPPDVRPAFWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHML 420
           ++Q PV QSAD+PPD+RPAF H FK   + PG+N VKKYGVIECDP+V+AG+D+T K M+
Sbjct: 361 YVQRPVDQSADTPPDIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMM 420

Query: 421 IPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLG 480
           IPY+PMLVPPKKW+GYDKGG+ FLPSY+MRTHGS RQQDA++ +  KQMQ+V+EALD LG
Sbjct: 421 IPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLG 480

Query: 481 STKWRVNRRVLSVVESLWAQGGNTAGLVDRKDVPIPE-KQLGDLTETQEWRWSMKKAKKI 540
           STKWRVN+R+L+VVES+WA GGN AGLVDRKDVPIPE     D+ E ++W+W ++K+KKI
Sbjct: 481 STKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKI 540

Query: 541 NQELHSQRCDVELKLSVARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEF 600
           NQELHSQRCD ELKLSVARK+KDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRG+LEF
Sbjct: 541 NQELHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEF 600

Query: 601 AEGRPLGKSGLHWLKIHLANLHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWL 660
           AEGRPLGKSGL WLKIHLA+L+AGGVEKL YD RLAFV++H+ +I DSA+NP+NG+RWWL
Sbjct: 601 AEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWL 660

Query: 661 TAEDPFQCLAACMNLSEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNL 720
            AEDPFQCLAAC+NLSEALKSS+PHTVIS+LPIHQDGSCNGLQHYAALGRD++EAAAVNL
Sbjct: 661 NAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNL 720

Query: 721 VAGEKPADVYSEIAARVHTIMIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYG 780
           VAGEKPADVY+EIA RV  I+  D+ KDP  +PNA LAKLLIDQVDRKLVKQTVMTSVYG
Sbjct: 721 VAGEKPADVYTEIALRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYG 780

Query: 781 VTYVGAREQIKKRLEEKGLISDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAK 840
           VTYVGAREQIK+RLEEKGLI DDRLLF ASCYAAKVTLAALGE+F+AARG M WLGDCAK
Sbjct: 781 VTYVGAREQIKRRLEEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAK 840

Query: 841 VIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNF 900
           VIA +NQPVRWTTPLGLPVVQPY+K++RH+IRTSLQ+LAL+REG++V+VRKQRTAFPPNF
Sbjct: 841 VIALENQPVRWTTPLGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQRTAFPPNF 900

Query: 901 VHSLDGSHMMLTALACRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESL 960
           VHSLDGSHMM+TA+ACRDAGL+FAGVHDSFWTHACDVD+MN ILREKFVELYS+P+LE L
Sbjct: 901 VHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSLPILEDL 960

Query: 961 LEGFETTYPGLTFPSLPERGDFDLQEVLRSPYFFN 976
           LE F+ +YP LTFP LP+RGDF+L+EVL SPYFFN
Sbjct: 961 LENFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977

[Close]

BLAST of IVF0006141 vs. ExPASy Swiss-Prot
Match: O24600 (DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPOT3 PE=2 SV=1)

HSP 1 Score: 1344.3 bits (3478), Expect = 0.0e+00
Identity = 670/970 (69.07%), Postives = 799/970 (82.37%), Query Frame = 0


Query: 21  WKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQPFHLQPLADSV--HENFTET 80
           W KP       R+    F    +  +S+ S   +  STS   H +P+++SV  H N  E+
Sbjct: 28  WLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTSLSVHEKPISNSVHFHGNLIES 87

Query: 81  LDNSMNLQIPT----SEIHQI-----TRGESG-QRIFIQDPPWIASLFLKGLYKCVQKEV 140
            +N  +    T    S I ++       G SG +R+F+QDPPWI++LFLKGL K V + +
Sbjct: 88  FENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQDPPWISALFLKGLSKMVDQTL 147

Query: 141 KLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPYVKTLFLGW 200
           K+E   I+KRK++ LRRRQ+K ETEAWE+MV EY++LE+EMCEK LAPNLPYVK +FLGW
Sbjct: 148 KIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGW 207

Query: 201 FEPLKQAIEKEQKTQ--RSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQQDCCVQ 260
           F+PLK  IE+EQK Q  +SKK +AA+APHIELL ADK+AVIVM+KMMGL+M   +D C+Q
Sbjct: 208 FQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQ 267

Query: 261 VVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGLIRRRRL 320
           VVQAAV IG AIEQEVRI +FL++ R N       D++   KEK++LRKRVN LIRR+R+
Sbjct: 268 VVQAAVSIGIAIEQEVRIHNFLKRTRKNN----AGDSQEELKEKQLLRKRVNSLIRRKRI 327

Query: 321 KEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPAFWHGFK 380
            +  K++K E  K WGR TQAKLGSRL+ELLIE+A++QPP++QS DS P+ RPAF H FK
Sbjct: 328 IDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFK 387

Query: 381 PVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLP 440
            V K PG   V++YGVIECD ++LAGLD++AKHMLIPY+PMLVPPK+WKGYDKGG+ FLP
Sbjct: 388 TVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLP 447

Query: 441 SYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWAQGGNTA 500
           SY+MRTHGS +QQDA+K+IS K   +VFEALD LG+TKWRVNR +L VVE LWA GGN A
Sbjct: 448 SYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIA 507

Query: 501 GLVDRKDVPIPEKQLG-DLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEE 560
           GLV+R+DVPIPEK    D  E Q W+WS +KA KIN+E HS RCDVELKLSVARKMKDEE
Sbjct: 508 GLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEE 567

Query: 561 GFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLHAGG 620
           GFYYPHN+DFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPLGKSGLHWLKIHLANL+AGG
Sbjct: 568 GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGG 627

Query: 621 VEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPH 680
           VEKLS+D RLAFV++HLD+I DSA NP++G RWWL AEDPFQCLAAC+ L++ALKS +P+
Sbjct: 628 VEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPY 687

Query: 681 TVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDA 740
           +VIS+LPIHQDGSCNGLQHYAALGRD+ EAAAVNLVAGEKPADVYSEI+ RVH IM +D+
Sbjct: 688 SVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDS 747

Query: 741 NKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLISDDRL 800
           +KDP +NP A+LAK+LI QVDRKLVKQTVMTSVYGVTYVGAREQIK+RLEEKG+I+D+R+
Sbjct: 748 SKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERM 807

Query: 801 LFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYK 860
           LF A+CY+AKVTLAALGEIFEAAR IM WLGDCAK+IA DN PVRW TPLGLPVVQPY +
Sbjct: 808 LFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCR 867

Query: 861 SERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAG 920
           SERHLIRTSLQVLAL+REGN+VDVRKQRTAFPPNFVHSLDG+HMM+TA+ACR+AGL FAG
Sbjct: 868 SERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAG 927

Query: 921 VHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERGDFDLQ 976
           VHDS+WTHACDVD MN ILREKFVELY+ P+LE LL+ F+ +YP L FP +P+RGDFDL+
Sbjct: 928 VHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLK 987

[Close]

BLAST of IVF0006141 vs. ExPASy Swiss-Prot
Match: Q8L6J3 (DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum OX=4097 GN=RPOT2-TOM PE=2 SV=2)

HSP 1 Score: 1148.7 bits (2970), Expect = 0.0e+00
Identity = 556/842 (66.03%), Postives = 687/842 (81.59%), Query Frame = 0


Query: 138  RKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIE 197
            RKY  L+RRQ+K ETEAWE+  KEYKEL  +MCE+KLAPNLPYVK+LFLGWFEPL+  I 
Sbjct: 181  RKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIA 240

Query: 198  KEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQQDCCVQVVQAAVQIGGA 257
            +EQ+     K KAA+A ++  L AD +AVI M+K+MGLLM        +VVQAA+ IG A
Sbjct: 241  EEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDA 300

Query: 258  IEQEVRIQSFLEKARSN--QRTKVPADTECLSKEKEVLRKRVNGLIRRRRLKEVQKLLKK 317
            IEQEVRI +FLEK +    ++ K   D E +++E+E LRK+V  L+++++L+ V +++++
Sbjct: 301  IEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRR 360

Query: 318  -EEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPAFWHGFKPVAKTPGQ 377
             ++ K WG+D +AK+GSRLIELL+++A+IQPP +Q A  PPD+RPAF H  + VAK   +
Sbjct: 361  QDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKET-K 420

Query: 378  NFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTHG 437
            +  ++YG+I+CD +V  GL++TA+HM+IPY+PMLVPP KW GYDKGGH +LPSYVMRTHG
Sbjct: 421  SASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHG 480

Query: 438  SSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWAQGGNTAGLVDRKDV 497
            + +Q++A+K  S  Q+Q VFEALD LGSTKWR+N+RVLSV++ +WA GG  A LVDR D 
Sbjct: 481  ARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDDA 540

Query: 498  PIPEK-QLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHNV 557
            P+PE+    D     +WRW +K  KK N+E HSQRCD+ELKL+VARKMKDEEGF+YPHNV
Sbjct: 541  PLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEGFFYPHNV 600

Query: 558  DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLHAGGVEKLSYDR 617
            DFRGRAYPMHPHLNHL SD+CRGVL FAEGRPLG+SGL WLKIHLANL AGGVEKLS + 
Sbjct: 601  DFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEG 660

Query: 618  RLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLPI 677
            R+AF ++H+D+IFDSA  P+ G RWWL AEDPFQCLA C+NLSEA++SS+P T IS++P+
Sbjct: 661  RIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSISHIPV 720

Query: 678  HQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDANKDPTTNP 737
            HQDGSCNGLQHYAALGRD L AAAVNLVAGEKPADVYS IAARV  IM RDA +DP   P
Sbjct: 721  HQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFP 780

Query: 738  NASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLISDDRLLFRASCYA 797
            +A  A+ L++QVDRKLVKQTVMTSVYGVTY+GAR+QIK+RL+E+G I+DD  LF A+CYA
Sbjct: 781  DAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYA 840

Query: 798  AKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIRT 857
            AKVTL ALGE+FEAAR IM WLG+CAK+IA +N+PVRWTTPLGLPVVQPY K  RHLI+T
Sbjct: 841  AKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKT 900

Query: 858  SLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWTH 917
            SLQ+L L++E   V V++QRTAFPPNF+HSLDGSHMM+TA+ACR AGL FAGVHDS+WTH
Sbjct: 901  SLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTH 960

Query: 918  ACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERGDFDLQEVLRSPYF 976
            ACDVD++N ILREKFVELY  P+LE LLE F+T+YP L FP LPERGDFDL++VL SPYF
Sbjct: 961  ACDVDKLNRILREKFVELYETPILEKLLESFQTSYPTLLFPPLPERGDFDLRDVLESPYF 1020

[Close]

BLAST of IVF0006141 vs. ExPASy TrEMBL
Match: A0A1S3BU26 (DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103493541 PE=3 SV=1)

HSP 1 Score: 1950.6 bits (5052), Expect = 0.0e+00
Identity = 971/975 (99.59%), Postives = 973/975 (99.79%), Query Frame = 0


Query: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ 60
           MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ
Sbjct: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ 60

Query: 61  PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLFLKGL 120
           PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITR ESGQRIFIQDPPWIASLFLKGL
Sbjct: 61  PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITREESGQRIFIQDPPWIASLFLKGL 120

Query: 121 YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY 180
           YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY
Sbjct: 121 YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY 180

Query: 181 VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ 240
           VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ
Sbjct: 181 VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ 240

Query: 241 QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGL 300
           QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNG 
Sbjct: 241 QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGF 300

Query: 301 IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA 360
           IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA
Sbjct: 301 IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA 360

Query: 361 FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG 420
           FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG
Sbjct: 361 FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG 420

Query: 421 GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA 480
           GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA
Sbjct: 421 GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA 480

Query: 481 QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK 540
           QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK
Sbjct: 481 QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK 540

Query: 541 MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 600
           MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN
Sbjct: 541 MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 600

Query: 601 LHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK 660
           L+AGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK
Sbjct: 601 LYAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK 660

Query: 661 SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI 720
           SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI
Sbjct: 661 SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI 720

Query: 721 MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI 780
           MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI
Sbjct: 721 MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI 780

Query: 781 SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV 840
           SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV
Sbjct: 781 SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV 840

Query: 841 QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 900
           QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG
Sbjct: 841 QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 900

Query: 901 LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG 960
           LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG
Sbjct: 901 LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG 960

Query: 961 DFDLQEVLRSPYFFN 976
           DF+LQEVLRSPYFFN
Sbjct: 961 DFNLQEVLRSPYFFN 975

[Close]

BLAST of IVF0006141 vs. ExPASy TrEMBL
Match: A0A5D3BDV2 (DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00250 PE=3 SV=1)

HSP 1 Score: 1941.0 bits (5027), Expect = 0.0e+00
Identity = 967/968 (99.90%), Postives = 967/968 (99.90%), Query Frame = 0


Query: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ 60
           MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ
Sbjct: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ 60

Query: 61  PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLFLKGL 120
           PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLFLKGL
Sbjct: 61  PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLFLKGL 120

Query: 121 YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY 180
           YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY
Sbjct: 121 YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY 180

Query: 181 VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ 240
           VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ
Sbjct: 181 VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ 240

Query: 241 QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGL 300
           QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGL
Sbjct: 241 QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGL 300

Query: 301 IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA 360
           IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA
Sbjct: 301 IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA 360

Query: 361 FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG 420
           FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG
Sbjct: 361 FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG 420

Query: 421 GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA 480
           GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA
Sbjct: 421 GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA 480

Query: 481 QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK 540
           QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK
Sbjct: 481 QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK 540

Query: 541 MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 600
           MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN
Sbjct: 541 MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 600

Query: 601 LHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK 660
           LHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK
Sbjct: 601 LHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK 660

Query: 661 SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI 720
           SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI
Sbjct: 661 SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI 720

Query: 721 MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI 780
           MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI
Sbjct: 721 MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI 780

Query: 781 SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV 840
           SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV
Sbjct: 781 SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV 840

Query: 841 QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 900
           QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG
Sbjct: 841 QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 900

Query: 901 LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG 960
           LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG
Sbjct: 901 LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG 960

Query: 961 DFDLQEVL 969
           DFDLQE L
Sbjct: 961 DFDLQENL 968

[Close]

BLAST of IVF0006141 vs. ExPASy TrEMBL
Match: A0A0A0LH38 (DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_2G036610 PE=3 SV=1)

HSP 1 Score: 1885.2 bits (4882), Expect = 0.0e+00
Identity = 934/975 (95.79%), Postives = 955/975 (97.95%), Query Frame = 0


Query: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ 60
           MT TASFFPTLQAPIHGSNAWKKPTKRWKCERKT TSFTSTFNS LSSVSFP+NFDSTSQ
Sbjct: 1   MTATASFFPTLQAPIHGSNAWKKPTKRWKCERKTHTSFTSTFNSPLSSVSFPVNFDSTSQ 60

Query: 61  PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLFLKGL 120
             HLQPLADSVHENFTETLDNSMNLQIP SEIHQITRGES +RIFIQDPPWIASLFLKGL
Sbjct: 61  SLHLQPLADSVHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDPPWIASLFLKGL 120

Query: 121 YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY 180
           YKCVQKEVKLEFM+IEKRKYNLLRRRQIKAETEAWEKMV+EYKELEREMCEKKLAPNLPY
Sbjct: 121 YKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPY 180

Query: 181 VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ 240
           VK LFLGWFEPLK AIE+EQKTQRSKKQKAAFAPHIELLSADK+AVIVMYKMMGLLM+A 
Sbjct: 181 VKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMMAA 240

Query: 241 QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGL 300
           QD CVQVVQAAVQIGGAIEQEVRIQS LEKARSNQRTKV ADTECL+KEKEVLRK+VNGL
Sbjct: 241 QDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADTECLTKEKEVLRKQVNGL 300

Query: 301 IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA 360
           IRRR+LKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPD+RPA
Sbjct: 301 IRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPA 360

Query: 361 FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG 420
           FWHGFKPVAKTPGQNFVKKYGV+ECDPIVLAGLD+TAKHMLIPYIPMLVPPKKWKGYDKG
Sbjct: 361 FWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKG 420

Query: 421 GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA 480
           GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNR VLSVVESLWA
Sbjct: 421 GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWA 480

Query: 481 QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK 540
           QGGNTAGLVDRKDVPIPEK LGDLTE QEWRWSMKKAKKINQELHSQRCDVELKLSVARK
Sbjct: 481 QGGNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARK 540

Query: 541 MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 600
           MKDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN
Sbjct: 541 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 600

Query: 601 LHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK 660
           L+AGGVEKLSYD RLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK
Sbjct: 601 LYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK 660

Query: 661 SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI 720
           SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI
Sbjct: 661 SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI 720

Query: 721 MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI 780
           MIRDA+KDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTY+GAREQIK+RLEEKGLI
Sbjct: 721 MIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLI 780

Query: 781 SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV 840
           SDDRL FRASCYAAKVTL+ALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV
Sbjct: 781 SDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV 840

Query: 841 QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 900
           QPYYKSERHLIRTSLQVLAL+REGN VDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG
Sbjct: 841 QPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 900

Query: 901 LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG 960
           LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLP RG
Sbjct: 901 LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRG 960

Query: 961 DFDLQEVLRSPYFFN 976
           DFDLQEVL+SPYFFN
Sbjct: 961 DFDLQEVLKSPYFFN 975

[Close]

BLAST of IVF0006141 vs. ExPASy TrEMBL
Match: A0A6J1E061 (DNA-directed RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111024704 PE=3 SV=1)

HSP 1 Score: 1793.1 bits (4643), Expect = 0.0e+00
Identity = 892/979 (91.11%), Postives = 930/979 (94.99%), Query Frame = 0


Query: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTF----NSSLSSVSFPINFD 60
           MT+TASFFPTLQAPI+G NAW+KPTKR  CER+T  SFTSTF    NS LSSVSFP N D
Sbjct: 1   MTSTASFFPTLQAPIYGGNAWRKPTKRCNCERRTHLSFTSTFNSLSNSPLSSVSFPTNSD 60

Query: 61  STSQPFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLF 120
           ST++P  LQPLADSV ENFTETLDNSMNLQ+PT         ES QRIFIQDPPWIASLF
Sbjct: 61  STAEPVRLQPLADSVQENFTETLDNSMNLQVPTR--------ESCQRIFIQDPPWIASLF 120

Query: 121 LKGLYKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAP 180
           LKGLYK VQKEVKLEF +IEKRKYNLLRRRQIKAETEAWE+MV+EYKELEREMCEKKLAP
Sbjct: 121 LKGLYKSVQKEVKLEFKEIEKRKYNLLRRRQIKAETEAWERMVEEYKELEREMCEKKLAP 180

Query: 181 NLPYVKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLL 240
           NLPYVKTLFLGWFEPLKQAIEKEQ TQRSKKQKAAFAPHIELLSADK+AVIVMYKMMGLL
Sbjct: 181 NLPYVKTLFLGWFEPLKQAIEKEQNTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLL 240

Query: 241 MVAQQDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKR 300
           MVAQQD CVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTK+PAD +CLSKEKE+LRKR
Sbjct: 241 MVAQQDGCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKIPADAQCLSKEKEILRKR 300

Query: 301 VNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPD 360
           VNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSAD PPD
Sbjct: 301 VNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADCPPD 360

Query: 361 VRPAFWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKG 420
           +RPAFWH FKPV KTPGQ  VK YGVIECDPIVLAGLD+TAKH+LIPYIPMLVPPKKWKG
Sbjct: 361 IRPAFWHRFKPVTKTPGQKIVKTYGVIECDPIVLAGLDRTAKHVLIPYIPMLVPPKKWKG 420

Query: 421 YDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVE 480
           YDKGGH FLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVE
Sbjct: 421 YDKGGHLFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVE 480

Query: 481 SLWAQGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLS 540
           S+WAQGGNTAGLVDRKDVPIPE+ LGDLTE QEW+WS++KAKKINQELHSQRCDVELKLS
Sbjct: 481 SIWAQGGNTAGLVDRKDVPIPEQPLGDLTEMQEWKWSVRKAKKINQELHSQRCDVELKLS 540

Query: 541 VARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKI 600
           VARKM+DEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKI
Sbjct: 541 VARKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKI 600

Query: 601 HLANLHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLS 660
           HLANL+AGGVEKLSYDRRLAFVDDHLD+IFDSASNPVNG+RWWLTAEDPFQCLAAC+NLS
Sbjct: 601 HLANLYAGGVEKLSYDRRLAFVDDHLDSIFDSASNPVNGNRWWLTAEDPFQCLAACINLS 660

Query: 661 EALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAAR 720
           EALKSS+PHTVIS+LPIHQDGSCNGLQHYAALGRDT EAAAVNLVAGEKPADVY+EIAAR
Sbjct: 661 EALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDTFEAAAVNLVAGEKPADVYTEIAAR 720

Query: 721 VHTIMIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEE 780
           VH IMIRD NKDP TNPNA LAK+LIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEE
Sbjct: 721 VHNIMIRDGNKDPATNPNALLAKILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEE 780

Query: 781 KGLISDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLG 840
           KGLISDDRLLFRA+CYAAKVTLAALGEIFEAARGIM WLGDCAKVIA DNQPVRWTTPLG
Sbjct: 781 KGLISDDRLLFRAACYAAKVTLAALGEIFEAARGIMSWLGDCAKVIAADNQPVRWTTPLG 840

Query: 841 LPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALAC 900
           LPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRK RTAFPPNFVHSLDGSHMMLTALAC
Sbjct: 841 LPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKHRTAFPPNFVHSLDGSHMMLTALAC 900

Query: 901 RDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSL 960
           RDAGLRFAGVHDSFWTHACDVD+MN+ILRE FVELY+MPVLESLLEGFETTYPGLTFPSL
Sbjct: 901 RDAGLRFAGVHDSFWTHACDVDQMNVILRETFVELYNMPVLESLLEGFETTYPGLTFPSL 960

Query: 961 PERGDFDLQEVLRSPYFFN 976
           P+RGDFDL+EVL SPYFFN
Sbjct: 961 PDRGDFDLREVLNSPYFFN 971

[Close]

BLAST of IVF0006141 vs. ExPASy TrEMBL
Match: A0A6J1I1C4 (DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111468549 PE=3 SV=1)

HSP 1 Score: 1751.5 bits (4535), Expect = 0.0e+00
Identity = 875/980 (89.29%), Postives = 923/980 (94.18%), Query Frame = 0


Query: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTF----NSSLSSVSFPINFD 60
           M +TASFFPT QA I+G NAW++P+KR KC+RKT  SFTSTF    NS +SSVSFPINFD
Sbjct: 1   MHSTASFFPTHQALIYGGNAWREPSKRCKCQRKTHLSFTSTFNSLSNSHISSVSFPINFD 60

Query: 61  STSQPFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLF 120
           ST++P  LQP ADSV ENFTE LDNSMNLQI  SEIHQIT GE  QRIFI+DPPWIASLF
Sbjct: 61  STAEPLRLQPPADSVQENFTEALDNSMNLQISKSEIHQITPGEPCQRIFIRDPPWIASLF 120

Query: 121 LKGLYKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAP 180
           LKGLYK +QK VKLEF +IEKRKYNLLRRRQ+KAETEAWEK V+EYKELEREMCEKKLAP
Sbjct: 121 LKGLYKSLQKGVKLEFREIEKRKYNLLRRRQLKAETEAWEKTVEEYKELEREMCEKKLAP 180

Query: 181 NLPYVKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLL 240
           NLPYVK+LFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSA+K+AVIVMYKMMGLL
Sbjct: 181 NLPYVKSLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSAEKMAVIVMYKMMGLL 240

Query: 241 MVAQQDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKR 300
           MVAQQD CV VVQAAVQIG AIEQEVRIQSFL KARSNQRTKVPAD +C ++EKE+LRKR
Sbjct: 241 MVAQQDGCVLVVQAAVQIGSAIEQEVRIQSFL-KARSNQRTKVPADAQCSNQEKELLRKR 300

Query: 301 VNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPD 360
           VN LIRRRRLKEVQKLLKKEEFK WGRDTQAKLGSRLIELLIESAFIQPPV+QSADSPPD
Sbjct: 301 VNSLIRRRRLKEVQKLLKKEEFKDWGRDTQAKLGSRLIELLIESAFIQPPVTQSADSPPD 360

Query: 361 VRPAFWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKG 420
           +RPAFWH FKPVAKTPG+N VK YGVIECDPIVL GLD+TAKHMLIPYIPML+PPKKWKG
Sbjct: 361 IRPAFWHKFKPVAKTPGKNIVKNYGVIECDPIVLTGLDRTAKHMLIPYIPMLIPPKKWKG 420

Query: 421 YDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVE 480
           YDKGGH FLPSYVMRTHGSSRQQDA+K ISGK MQKVFEALDMLGSTKWRVNRRVLSVVE
Sbjct: 421 YDKGGHLFLPSYVMRTHGSSRQQDALKKISGKPMQKVFEALDMLGSTKWRVNRRVLSVVE 480

Query: 481 SLWAQGGNTAGLVDRKDVPIPEKQL-GDLTETQEWRWSMKKAKKINQELHSQRCDVELKL 540
           S+W QGGNTAGLVDRKDVPIPEK L GDLTE QEW+WSM+KAKKINQELHSQRCD+ELKL
Sbjct: 481 SIWEQGGNTAGLVDRKDVPIPEKPLGGDLTEMQEWKWSMRKAKKINQELHSQRCDIELKL 540

Query: 541 SVARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLK 600
           SVARKMKDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLK
Sbjct: 541 SVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLK 600

Query: 601 IHLANLHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNL 660
           IHLANL+AGGVEKLSYDRRLAFVDDHLD+IFDSASNPV GDRWWLTAEDPFQCLAAC+NL
Sbjct: 601 IHLANLYAGGVEKLSYDRRLAFVDDHLDSIFDSASNPVKGDRWWLTAEDPFQCLAACINL 660

Query: 661 SEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAA 720
            EALKSS+PHTVIS+LPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGE+ ADVYSEIAA
Sbjct: 661 FEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEEFADVYSEIAA 720

Query: 721 RVHTIMIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLE 780
           RVH IMIRD NKDPT NPNA LAK+LIDQVDRKLVKQTVMTSVYGVTYVGAREQIK+RLE
Sbjct: 721 RVHDIMIRDGNKDPTANPNALLAKILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLE 780

Query: 781 EKGLISDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPL 840
           EKG+ISDDRLLFRA+CYAAKVTLAALGEIFEAARGIM WLGDCAKVIA DNQPVRWTTPL
Sbjct: 781 EKGIISDDRLLFRAACYAAKVTLAALGEIFEAARGIMSWLGDCAKVIAADNQPVRWTTPL 840

Query: 841 GLPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALA 900
           GLPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALA
Sbjct: 841 GLPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALA 900

Query: 901 CRDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPS 960
           CRDAGLRFAGVHDSFWTHACDVD+MNLILREKFVELY+MPVLE+LLE FETTYPGLTFP 
Sbjct: 901 CRDAGLRFAGVHDSFWTHACDVDQMNLILREKFVELYNMPVLETLLEDFETTYPGLTFPP 960

Query: 961 LPERGDFDLQEVLRSPYFFN 976
           LPERG+FDL+EVL+S YFFN
Sbjct: 961 LPERGNFDLREVLKSRYFFN 979

[Close]

BLAST of IVF0006141 vs. NCBI nr
Match: XP_008452554.1 (PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Cucumis melo])

HSP 1 Score: 1939 bits (5022), Expect = 0.0
Identity = 971/975 (99.59%), Postives = 973/975 (99.79%), Query Frame = 0


Query: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ 60
           MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ
Sbjct: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ 60

Query: 61  PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLFLKGL 120
           PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITR ESGQRIFIQDPPWIASLFLKGL
Sbjct: 61  PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITREESGQRIFIQDPPWIASLFLKGL 120

Query: 121 YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY 180
           YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY
Sbjct: 121 YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY 180

Query: 181 VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ 240
           VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ
Sbjct: 181 VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ 240

Query: 241 QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGL 300
           QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNG 
Sbjct: 241 QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGF 300

Query: 301 IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA 360
           IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA
Sbjct: 301 IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA 360

Query: 361 FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG 420
           FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG
Sbjct: 361 FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG 420

Query: 421 GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA 480
           GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA
Sbjct: 421 GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA 480

Query: 481 QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK 540
           QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK
Sbjct: 481 QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK 540

Query: 541 MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 600
           MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN
Sbjct: 541 MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 600

Query: 601 LHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK 660
           L+AGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK
Sbjct: 601 LYAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK 660

Query: 661 SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI 720
           SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI
Sbjct: 661 SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI 720

Query: 721 MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI 780
           MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI
Sbjct: 721 MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI 780

Query: 781 SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV 840
           SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV
Sbjct: 781 SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV 840

Query: 841 QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 900
           QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG
Sbjct: 841 QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 900

Query: 901 LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG 960
           LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG
Sbjct: 901 LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG 960

Query: 961 DFDLQEVLRSPYFFN 975
           DF+LQEVLRSPYFFN
Sbjct: 961 DFNLQEVLRSPYFFN 975

[Close]

BLAST of IVF0006141 vs. NCBI nr
Match: KAA0056119.1 (DNA-directed RNA polymerase 3 [Cucumis melo var. makuwa] >TYJ96398.1 DNA-directed RNA polymerase 3 [Cucumis melo var. makuwa])

HSP 1 Score: 1929 bits (4997), Expect = 0.0
Identity = 967/968 (99.90%), Postives = 967/968 (99.90%), Query Frame = 0


Query: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ 60
           MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ
Sbjct: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ 60

Query: 61  PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLFLKGL 120
           PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLFLKGL
Sbjct: 61  PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLFLKGL 120

Query: 121 YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY 180
           YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY
Sbjct: 121 YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY 180

Query: 181 VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ 240
           VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ
Sbjct: 181 VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ 240

Query: 241 QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGL 300
           QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGL
Sbjct: 241 QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGL 300

Query: 301 IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA 360
           IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA
Sbjct: 301 IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA 360

Query: 361 FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG 420
           FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG
Sbjct: 361 FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG 420

Query: 421 GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA 480
           GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA
Sbjct: 421 GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA 480

Query: 481 QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK 540
           QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK
Sbjct: 481 QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK 540

Query: 541 MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 600
           MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN
Sbjct: 541 MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 600

Query: 601 LHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK 660
           LHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK
Sbjct: 601 LHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK 660

Query: 661 SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI 720
           SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI
Sbjct: 661 SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI 720

Query: 721 MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI 780
           MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI
Sbjct: 721 MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI 780

Query: 781 SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV 840
           SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV
Sbjct: 781 SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV 840

Query: 841 QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 900
           QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG
Sbjct: 841 QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 900

Query: 901 LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG 960
           LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG
Sbjct: 901 LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG 960

Query: 961 DFDLQEVL 968
           DFDLQE L
Sbjct: 961 DFDLQENL 968

[Close]

BLAST of IVF0006141 vs. NCBI nr
Match: XP_004144791.2 (DNA-directed RNA polymerase 3, chloroplastic isoform X1 [Cucumis sativus] >KGN61063.1 hypothetical protein Csa_021248 [Cucumis sativus])

HSP 1 Score: 1873 bits (4852), Expect = 0.0
Identity = 934/975 (95.79%), Postives = 955/975 (97.95%), Query Frame = 0


Query: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQ 60
           MT TASFFPTLQAPIHGSNAWKKPTKRWKCERKT TSFTSTFNS LSSVSFP+NFDSTSQ
Sbjct: 1   MTATASFFPTLQAPIHGSNAWKKPTKRWKCERKTHTSFTSTFNSPLSSVSFPVNFDSTSQ 60

Query: 61  PFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLFLKGL 120
             HLQPLADSVHENFTETLDNSMNLQIP SEIHQITRGES +RIFIQDPPWIASLFLKGL
Sbjct: 61  SLHLQPLADSVHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDPPWIASLFLKGL 120

Query: 121 YKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPY 180
           YKCVQKEVKLEFM+IEKRKYNLLRRRQIKAETEAWEKMV+EYKELEREMCEKKLAPNLPY
Sbjct: 121 YKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPNLPY 180

Query: 181 VKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQ 240
           VK LFLGWFEPLK AIE+EQKTQRSKKQKAAFAPHIELLSADK+AVIVMYKMMGLLM+A 
Sbjct: 181 VKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLMMAA 240

Query: 241 QDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGL 300
           QD CVQVVQAAVQIGGAIEQEVRIQS LEKARSNQRTKV ADTECL+KEKEVLRK+VNGL
Sbjct: 241 QDGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRADTECLTKEKEVLRKQVNGL 300

Query: 301 IRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPA 360
           IRRR+LKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPD+RPA
Sbjct: 301 IRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDIRPA 360

Query: 361 FWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKG 420
           FWHGFKPVAKTPGQNFVKKYGV+ECDPIVLAGLD+TAKHMLIPYIPMLVPPKKWKGYDKG
Sbjct: 361 FWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWKGYDKG 420

Query: 421 GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWA 480
           GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNR VLSVVESLWA
Sbjct: 421 GHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVVESLWA 480

Query: 481 QGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK 540
           QGGNTAGLVDRKDVPIPEK LGDLTE QEWRWSMKKAKKINQELHSQRCDVELKLSVARK
Sbjct: 481 QGGNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKLSVARK 540

Query: 541 MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 600
           MKDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN
Sbjct: 541 MKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 600

Query: 601 LHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK 660
           L+AGGVEKLSYD RLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK
Sbjct: 601 LYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK 660

Query: 661 SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI 720
           SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI
Sbjct: 661 SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI 720

Query: 721 MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI 780
           MIRDA+KDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTY+GAREQIK+RLEEKGLI
Sbjct: 721 MIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLEEKGLI 780

Query: 781 SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV 840
           SDDRL FRASCYAAKVTL+ALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV
Sbjct: 781 SDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV 840

Query: 841 QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 900
           QPYYKSERHLIRTSLQVLAL+REGN VDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG
Sbjct: 841 QPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 900

Query: 901 LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG 960
           LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLP RG
Sbjct: 901 LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRG 960

Query: 961 DFDLQEVLRSPYFFN 975
           DFDLQEVL+SPYFFN
Sbjct: 961 DFDLQEVLKSPYFFN 975

[Close]

BLAST of IVF0006141 vs. NCBI nr
Match: XP_038889744.1 (DNA-directed RNA polymerase 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 1840 bits (4765), Expect = 0.0
Identity = 920/979 (93.97%), Postives = 950/979 (97.04%), Query Frame = 0


Query: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNS----SLSSVSFPINFD 60
           MTT ASFFPTLQAPIHG NAWKKPTKR KCERKT  SF STFNS     LSSVSFPINFD
Sbjct: 1   MTTAASFFPTLQAPIHGGNAWKKPTKRCKCERKTHLSFISTFNSLSNSPLSSVSFPINFD 60

Query: 61  STSQPFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLF 120
           STS+P  LQPLADSV ENFTETLD SMNLQIP SE+ QITRGES QRIFIQDPPWIASLF
Sbjct: 61  STSEPVQLQPLADSVQENFTETLDGSMNLQIPMSEVRQITRGESSQRIFIQDPPWIASLF 120

Query: 121 LKGLYKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAP 180
           LKGLYK VQKEVKLE+M+IEKRKYNLLRRRQIKAETEAWEKMV+EYKELEREMCEKKLAP
Sbjct: 121 LKGLYKSVQKEVKLEYMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAP 180

Query: 181 NLPYVKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLL 240
           NLPYVKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADK+AVIVMYKMMGLL
Sbjct: 181 NLPYVKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLL 240

Query: 241 MVAQQDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKR 300
           MVAQQD CVQVVQAAVQIGGAIEQEVRIQSFL+KARSNQRTKVPADTECLSKEKEVLRKR
Sbjct: 241 MVAQQDGCVQVVQAAVQIGGAIEQEVRIQSFLDKARSNQRTKVPADTECLSKEKEVLRKR 300

Query: 301 VNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPD 360
           VNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPD
Sbjct: 301 VNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPD 360

Query: 361 VRPAFWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKG 420
           +RPAFWH FKPVAKTPGQN VK YGVIECDPIVLAGLD+TAKHMLIPYIPMLVPP+KWKG
Sbjct: 361 IRPAFWHRFKPVAKTPGQNIVKNYGVIECDPIVLAGLDRTAKHMLIPYIPMLVPPRKWKG 420

Query: 421 YDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVE 480
           YDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVE
Sbjct: 421 YDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVE 480

Query: 481 SLWAQGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLS 540
           S+WAQGGNTAGLVDRKDVPIPEK LGDLT+ QEW+WSM+KAKKINQELHSQRCDVELKLS
Sbjct: 481 SIWAQGGNTAGLVDRKDVPIPEKPLGDLTDMQEWKWSMRKAKKINQELHSQRCDVELKLS 540

Query: 541 VARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKI 600
           VAR+MKDEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGL WLKI
Sbjct: 541 VARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKI 600

Query: 601 HLANLHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLS 660
           HLANL+AGGVEKLSYDRR+AFVDDHLD+IFDSASNPVNGDRWWLTAEDPFQCLAAC+NLS
Sbjct: 601 HLANLYAGGVEKLSYDRRVAFVDDHLDSIFDSASNPVNGDRWWLTAEDPFQCLAACINLS 660

Query: 661 EALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAAR 720
           EALKSS+PHTVIS+LPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAAR
Sbjct: 661 EALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAAR 720

Query: 721 VHTIMIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEE 780
           VHTIMIRD NKDPTTNPNA LAK+LIDQVDRKLVKQTVMTSVYGVTYVGAREQIK+RLEE
Sbjct: 721 VHTIMIRDGNKDPTTNPNALLAKILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEE 780

Query: 781 KGLISDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLG 840
           KG+ISDDRLLFRA+CYAAKVTLAALGEIFEAARGIMGWLGDCAKVIA DNQPVRWTTPLG
Sbjct: 781 KGVISDDRLLFRAACYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAADNQPVRWTTPLG 840

Query: 841 LPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALAC 900
           LPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTA+AC
Sbjct: 841 LPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTAVAC 900

Query: 901 RDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSL 960
           RDAGLRFAGVHDSFWTHACDVD+MNLILREKFVELY+MPVLESLLEGFETTYPGLTFPSL
Sbjct: 901 RDAGLRFAGVHDSFWTHACDVDQMNLILREKFVELYNMPVLESLLEGFETTYPGLTFPSL 960

Query: 961 PERGDFDLQEVLRSPYFFN 975
           PERGDFDLQEVL+SPYFFN
Sbjct: 961 PERGDFDLQEVLKSPYFFN 979

[Close]

BLAST of IVF0006141 vs. NCBI nr
Match: XP_022158151.1 (DNA-directed RNA polymerase 3, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 1781 bits (4612), Expect = 0.0
Identity = 892/979 (91.11%), Postives = 930/979 (94.99%), Query Frame = 0


Query: 1   MTTTASFFPTLQAPIHGSNAWKKPTKRWKCERKTQTSFTSTFNS----SLSSVSFPINFD 60
           MT+TASFFPTLQAPI+G NAW+KPTKR  CER+T  SFTSTFNS     LSSVSFP N D
Sbjct: 1   MTSTASFFPTLQAPIYGGNAWRKPTKRCNCERRTHLSFTSTFNSLSNSPLSSVSFPTNSD 60

Query: 61  STSQPFHLQPLADSVHENFTETLDNSMNLQIPTSEIHQITRGESGQRIFIQDPPWIASLF 120
           ST++P  LQPLADSV ENFTETLDNSMNLQ+PT E        S QRIFIQDPPWIASLF
Sbjct: 61  STAEPVRLQPLADSVQENFTETLDNSMNLQVPTRE--------SCQRIFIQDPPWIASLF 120

Query: 121 LKGLYKCVQKEVKLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAP 180
           LKGLYK VQKEVKLEF +IEKRKYNLLRRRQIKAETEAWE+MV+EYKELEREMCEKKLAP
Sbjct: 121 LKGLYKSVQKEVKLEFKEIEKRKYNLLRRRQIKAETEAWERMVEEYKELEREMCEKKLAP 180

Query: 181 NLPYVKTLFLGWFEPLKQAIEKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLL 240
           NLPYVKTLFLGWFEPLKQAIEKEQ TQRSKKQKAAFAPHIELLSADK+AVIVMYKMMGLL
Sbjct: 181 NLPYVKTLFLGWFEPLKQAIEKEQNTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLL 240

Query: 241 MVAQQDCCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKR 300
           MVAQQD CVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTK+PAD +CLSKEKE+LRKR
Sbjct: 241 MVAQQDGCVQVVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKIPADAQCLSKEKEILRKR 300

Query: 301 VNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPD 360
           VNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSAD PPD
Sbjct: 301 VNGLIRRRRLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADCPPD 360

Query: 361 VRPAFWHGFKPVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKG 420
           +RPAFWH FKPV KTPGQ  VK YGVIECDPIVLAGLD+TAKH+LIPYIPMLVPPKKWKG
Sbjct: 361 IRPAFWHRFKPVTKTPGQKIVKTYGVIECDPIVLAGLDRTAKHVLIPYIPMLVPPKKWKG 420

Query: 421 YDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVE 480
           YDKGGH FLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVE
Sbjct: 421 YDKGGHLFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVE 480

Query: 481 SLWAQGGNTAGLVDRKDVPIPEKQLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLS 540
           S+WAQGGNTAGLVDRKDVPIPE+ LGDLTE QEW+WS++KAKKINQELHSQRCDVELKLS
Sbjct: 481 SIWAQGGNTAGLVDRKDVPIPEQPLGDLTEMQEWKWSVRKAKKINQELHSQRCDVELKLS 540

Query: 541 VARKMKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKI 600
           VARKM+DEEGFYYPHN+DFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKI
Sbjct: 541 VARKMRDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKI 600

Query: 601 HLANLHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLS 660
           HLANL+AGGVEKLSYDRRLAFVDDHLD+IFDSASNPVNG+RWWLTAEDPFQCLAAC+NLS
Sbjct: 601 HLANLYAGGVEKLSYDRRLAFVDDHLDSIFDSASNPVNGNRWWLTAEDPFQCLAACINLS 660

Query: 661 EALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAAR 720
           EALKSS+PHTVIS+LPIHQDGSCNGLQHYAALGRDT EAAAVNLVAGEKPADVY+EIAAR
Sbjct: 661 EALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDTFEAAAVNLVAGEKPADVYTEIAAR 720

Query: 721 VHTIMIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEE 780
           VH IMIRD NKDP TNPNA LAK+LIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEE
Sbjct: 721 VHNIMIRDGNKDPATNPNALLAKILIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEE 780

Query: 781 KGLISDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLG 840
           KGLISDDRLLFRA+CYAAKVTLAALGEIFEAARGIM WLGDCAKVIA DNQPVRWTTPLG
Sbjct: 781 KGLISDDRLLFRAACYAAKVTLAALGEIFEAARGIMSWLGDCAKVIAADNQPVRWTTPLG 840

Query: 841 LPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALAC 900
           LPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRK RTAFPPNFVHSLDGSHMMLTALAC
Sbjct: 841 LPVVQPYYKSERHLIRTSLQVLALRREGNSVDVRKHRTAFPPNFVHSLDGSHMMLTALAC 900

Query: 901 RDAGLRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSL 960
           RDAGLRFAGVHDSFWTHACDVD+MN+ILRE FVELY+MPVLESLLEGFETTYPGLTFPSL
Sbjct: 901 RDAGLRFAGVHDSFWTHACDVDQMNVILRETFVELYNMPVLESLLEGFETTYPGLTFPSL 960

Query: 961 PERGDFDLQEVLRSPYFFN 975
           P+RGDFDL+EVL SPYFFN
Sbjct: 961 PDRGDFDLREVLNSPYFFN 971

[Close]

BLAST of IVF0006141 vs. TAIR 10
Match: AT2G24120.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 1344.3 bits (3478), Expect = 0.0e+00
Identity = 670/970 (69.07%), Postives = 799/970 (82.37%), Query Frame = 0


Query: 21  WKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQPFHLQPLADSV--HENFTET 80
           W KP       R+    F    +  +S+ S   +  STS   H +P+++SV  H N  E+
Sbjct: 28  WLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTSLSVHEKPISNSVHFHGNLIES 87

Query: 81  LDNSMNLQIPT----SEIHQI-----TRGESG-QRIFIQDPPWIASLFLKGLYKCVQKEV 140
            +N  +    T    S I ++       G SG +R+F+QDPPWI++LFLKGL K V + +
Sbjct: 88  FENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQDPPWISALFLKGLSKMVDQTL 147

Query: 141 KLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPYVKTLFLGW 200
           K+E   I+KRK++ LRRRQ+K ETEAWE+MV EY++LE+EMCEK LAPNLPYVK +FLGW
Sbjct: 148 KIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGW 207

Query: 201 FEPLKQAIEKEQKTQ--RSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQQDCCVQ 260
           F+PLK  IE+EQK Q  +SKK +AA+APHIELL ADK+AVIVM+KMMGL+M   +D C+Q
Sbjct: 208 FQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQ 267

Query: 261 VVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGLIRRRRL 320
           VVQAAV IG AIEQEVRI +FL++ R N       D++   KEK++LRKRVN LIRR+R+
Sbjct: 268 VVQAAVSIGIAIEQEVRIHNFLKRTRKNN----AGDSQEELKEKQLLRKRVNSLIRRKRI 327

Query: 321 KEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPAFWHGFK 380
            +  K++K E  K WGR TQAKLGSRL+ELLIE+A++QPP++QS DS P+ RPAF H FK
Sbjct: 328 IDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFK 387

Query: 381 PVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLP 440
            V K PG   V++YGVIECD ++LAGLD++AKHMLIPY+PMLVPPK+WKGYDKGG+ FLP
Sbjct: 388 TVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLP 447

Query: 441 SYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWAQGGNTA 500
           SY+MRTHGS +QQDA+K+IS K   +VFEALD LG+TKWRVNR +L VVE LWA GGN A
Sbjct: 448 SYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIA 507

Query: 501 GLVDRKDVPIPEKQLG-DLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEE 560
           GLV+R+DVPIPEK    D  E Q W+WS +KA KIN+E HS RCDVELKLSVARKMKDEE
Sbjct: 508 GLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEE 567

Query: 561 GFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLHAGG 620
           GFYYPHN+DFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPLGKSGLHWLKIHLANL+AGG
Sbjct: 568 GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGG 627

Query: 621 VEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPH 680
           VEKLS+D RLAFV++HLD+I DSA NP++G RWWL AEDPFQCLAAC+ L++ALKS +P+
Sbjct: 628 VEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPY 687

Query: 681 TVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDA 740
           +VIS+LPIHQDGSCNGLQHYAALGRD+ EAAAVNLVAGEKPADVYSEI+ RVH IM +D+
Sbjct: 688 SVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDS 747

Query: 741 NKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLISDDRL 800
           +KDP +NP A+LAK+LI QVDRKLVKQTVMTSVYGVTYVGAREQIK+RLEEKG+I+D+R+
Sbjct: 748 SKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERM 807

Query: 801 LFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYK 860
           LF A+CY+AKVTLAALGEIFEAAR IM WLGDCAK+IA DN PVRW TPLGLPVVQPY +
Sbjct: 808 LFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCR 867

Query: 861 SERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAG 920
           SERHLIRTSLQVLAL+REGN+VDVRKQRTAFPPNFVHSLDG+HMM+TA+ACR+AGL FAG
Sbjct: 868 SERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAG 927

Query: 921 VHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERGDFDLQ 976
           VHDS+WTHACDVD MN ILREKFVELY+ P+LE LL+ F+ +YP L FP +P+RGDFDL+
Sbjct: 928 VHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLK 987

[Close]

BLAST of IVF0006141 vs. TAIR 10
Match: AT2G24120.2 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 1158.7 bits (2996), Expect = 0.0e+00
Identity = 587/862 (68.10%), Postives = 702/862 (81.44%), Query Frame = 0


Query: 21  WKKPTKRWKCERKTQTSFTSTFNSSLSSVSFPINFDSTSQPFHLQPLADSV--HENFTET 80
           W KP       R+    F    +  +S+ S   +  STS   H +P+++SV  H N  E+
Sbjct: 28  WLKPPPSSALFRRKTLPFFERHSLPISASSSSSSSSSTSLSVHEKPISNSVHFHGNLIES 87

Query: 81  LDNSMNLQIPT----SEIHQI-----TRGESG-QRIFIQDPPWIASLFLKGLYKCVQKEV 140
            +N  +    T    S I ++       G SG +R+F+QDPPWI++LFLKGL K V + +
Sbjct: 88  FENQDSSYAGTIKGASLIEELENPVERNGLSGRRRLFMQDPPWISALFLKGLSKMVDQTL 147

Query: 141 KLEFMKIEKRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPYVKTLFLGW 200
           K+E   I+KRK++ LRRRQ+K ETEAWE+MV EY++LE+EMCEK LAPNLPYVK +FLGW
Sbjct: 148 KIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPYVKHMFLGW 207

Query: 201 FEPLKQAIEKEQKTQ--RSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQQDCCVQ 260
           F+PLK  IE+EQK Q  +SKK +AA+APHIELL ADK+AVIVM+KMMGL+M   +D C+Q
Sbjct: 208 FQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMSGHEDGCIQ 267

Query: 261 VVQAAVQIGGAIEQEVRIQSFLEKARSNQRTKVPADTECLSKEKEVLRKRVNGLIRRRRL 320
           VVQAAV IG AIEQEVRI +FL++ R N       D++   KEK++LRKRVN LIRR+R+
Sbjct: 268 VVQAAVSIGIAIEQEVRIHNFLKRTRKNN----AGDSQEELKEKQLLRKRVNSLIRRKRI 327

Query: 321 KEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPAFWHGFK 380
            +  K++K E  K WGR TQAKLGSRL+ELLIE+A++QPP++QS DS P+ RPAF H FK
Sbjct: 328 IDALKVVKSEGTKPWGRATQAKLGSRLLELLIEAAYVQPPLTQSGDSIPEFRPAFRHRFK 387

Query: 381 PVAKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLP 440
            V K PG   V++YGVIECD ++LAGLD++AKHMLIPY+PMLVPPK+WKGYDKGG+ FLP
Sbjct: 388 TVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLP 447

Query: 441 SYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWAQGGNTA 500
           SY+MRTHGS +QQDA+K+IS K   +VFEALD LG+TKWRVNR +L VVE LWA GGN A
Sbjct: 448 SYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVNRNILDVVERLWADGGNIA 507

Query: 501 GLVDRKDVPIPEKQLG-DLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEE 560
           GLV+R+DVPIPEK    D  E Q W+WS +KA KIN+E HS RCDVELKLSVARKMKDEE
Sbjct: 508 GLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSLRCDVELKLSVARKMKDEE 567

Query: 561 GFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLHAGG 620
           GFYYPHN+DFRGRAYPMHPHLNHLSSDLCRG LEFAEGRPLGKSGLHWLKIHLANL+AGG
Sbjct: 568 GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLGKSGLHWLKIHLANLYAGG 627

Query: 621 VEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPH 680
           VEKLS+D RLAFV++HLD+I DSA NP++G RWWL AEDPFQCLAAC+ L++ALKS +P+
Sbjct: 628 VEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQCLAACVILTQALKSPSPY 687

Query: 681 TVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDA 740
           +VIS+LPIHQDGSCNGLQHYAALGRD+ EAAAVNLVAGEKPADVYSEI+ RVH IM +D+
Sbjct: 688 SVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPADVYSEISRRVHEIMKKDS 747

Query: 741 NKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLISDDRL 800
           +KDP +NP A+LAK+LI QVDRKLVKQTVMTSVYGVTYVGAREQIK+RLEEKG+I+D+R+
Sbjct: 748 SKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVITDERM 807

Query: 801 LFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYK 860
           LF A+CY+AKVTLAALGEIFEAAR IM WLGDCAK+IA DN PVRW TPLGLPVVQPY +
Sbjct: 808 LFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQPYCR 867

Query: 861 SERHLIRTSLQVLALRREGNSV 868
           SERHLIRTSLQVLAL+REGN+V
Sbjct: 868 SERHLIRTSLQVLALQREGNTV 885

[Close]

BLAST of IVF0006141 vs. TAIR 10
Match: AT1G68990.1 (male gametophyte defective 3 )

HSP 1 Score: 1105.5 bits (2858), Expect = 0.0e+00
Identity = 535/848 (63.09%), Postives = 667/848 (78.66%), Query Frame = 0


Query: 138 RKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIE 197
           +K+ +L++RQ+K ETE WE+  +E +E+  +MCE+KLAPNLPY+K+LFLGWFEP++ AI+
Sbjct: 130 QKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRNAIQ 189

Query: 198 KEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMV-AQQDCCVQVVQAAVQIGG 257
            +  T + KK K  +AP +E L ADK+AVI M+KMMGLLM  A+    V++V AA QIG 
Sbjct: 190 DDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQIGE 249

Query: 258 AIEQEVRIQSFLEKARSNQRTKVPADTEC-------LSKEKEVLRKRVNGLIRRRRLKEV 317
           A+EQEVRI SFL+K      T    +TE        ++KE E  RK+V  L+ + +L++V
Sbjct: 250 AVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKLRQV 309

Query: 318 QKLLKK-EEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPAFWHGFKPV 377
           + L++K + FK WG++ Q K+G+RLI+LL+E+A+IQPP  Q  D PPD+RPAF   F+ V
Sbjct: 310 KALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNFRTV 369

Query: 378 AKTPGQNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSY 437
                    ++YG IECDP+VL GLD++A+HM+IPY+PML+PP+ W GYD+G HFFLPSY
Sbjct: 370 T-LENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLPSY 429

Query: 438 VMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWAQGGNTAGL 497
           VMRTHG+ +Q+  MK    +Q++ V+EALD LG+TKW++N++VLS+V+ +WA GG   GL
Sbjct: 430 VMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRIGGL 489

Query: 498 VDRKDVPIPEK-QLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGF 557
           VDR+DVPIPE+ +  D  + + WRW  KKA K N E HSQRCD+ELKL VARKMKDEEGF
Sbjct: 490 VDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDEEGF 549

Query: 558 YYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLHAGGVE 617
           YYPHNVDFRGRAYP+HP+LNHL SDLCRG+LEF EG+PLGKSGL WLKIH+ANL+AGGV+
Sbjct: 550 YYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAGGVD 609

Query: 618 KLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTV 677
           KL+Y+ R+AF + HL++IFDS+  P+ G RWWL AEDPFQCLAAC+NLSEAL+S  P   
Sbjct: 610 KLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFPEAA 669

Query: 678 ISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDANK 737
           IS++PIHQDGSCNGLQHYAALGRD L A AVNLV GEKPADVY+EIAARV  IM +DA +
Sbjct: 670 ISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARVLKIMQQDAEE 729

Query: 738 DPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLISDDRLLF 797
           DP T PNA+ AKL++DQVDRKLVKQTVMTSVYGVTY GAR+QIKKRL+E+G   DD L F
Sbjct: 730 DPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFEDDSLTF 789

Query: 798 RASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSE 857
            ASCYAAK+TL AL E+FEAAR I  W GDCAK+IA +N  V WTTPLGLPVVQPY K  
Sbjct: 790 HASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIASENNAVCWTTPLGLPVVQPYRKPG 849

Query: 858 RHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVH 917
           RHL++T+LQVL L RE + V  R+Q TAF PNF+HSLDGSHMM+TA+AC  AGL FAGVH
Sbjct: 850 RHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFAGVH 909

Query: 918 DSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERGDFDLQEV 976
           DSFWTHACDVD MN ILREKFVELY  P+LE+LLE F+ ++P ++FP LPERGDFDL++V
Sbjct: 910 DSFWTHACDVDVMNTILREKFVELYEKPILENLLESFQKSFPDISFPPLPERGDFDLRKV 969

[Close]

BLAST of IVF0006141 vs. TAIR 10
Match: AT1G68990.2 (male gametophyte defective 3 )

HSP 1 Score: 1098.6 bits (2840), Expect = 0.0e+00
Identity = 535/855 (62.57%), Postives = 667/855 (78.01%), Query Frame = 0


Query: 138 RKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAIE 197
           +K+ +L++RQ+K ETE WE+  +E +E+  +MCE+KLAPNLPY+K+LFLGWFEP++ AI+
Sbjct: 130 QKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPNLPYMKSLFLGWFEPVRNAIQ 189

Query: 198 KEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMV-AQQDCCVQVVQAAVQIGG 257
            +  T + KK K  +AP +E L ADK+AVI M+KMMGLLM  A+    V++V AA QIG 
Sbjct: 190 DDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLMTNAEGVGIVKLVNAATQIGE 249

Query: 258 AIEQEVRIQSFLEKARSNQRTKVPADTEC-------LSKEKEVLRKRVNGLIRRRRLKEV 317
           A+EQEVRI SFL+K      T    +TE        ++KE E  RK+V  L+ + +L++V
Sbjct: 250 AVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKLRQV 309

Query: 318 QKLLKK-EEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPAFWHGFKPV 377
           + L++K + FK WG++ Q K+G+RLI+LL+E+A+IQPP  Q  D PPD+RPAF   F+ V
Sbjct: 310 KALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFDDGPPDIRPAFKQNFRTV 369

Query: 378 AKTPGQNFVKKYGVIECDPIVLAGLDQT-------AKHMLIPYIPMLVPPKKWKGYDKGG 437
                    ++YG IECDP+VL GLD++       A+HM+IPY+PML+PP+ W GYD+G 
Sbjct: 370 T-LENTKTSRRYGCIECDPLVLKGLDKSVSRIVDYARHMVIPYLPMLIPPQNWTGYDQGA 429

Query: 438 HFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWAQ 497
           HFFLPSYVMRTHG+ +Q+  MK    +Q++ V+EALD LG+TKW++N++VLS+V+ +WA 
Sbjct: 430 HFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWAN 489

Query: 498 GGNTAGLVDRKDVPIPEK-QLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARK 557
           GG   GLVDR+DVPIPE+ +  D  + + WRW  KKA K N E HSQRCD+ELKL VARK
Sbjct: 490 GGRIGGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARK 549

Query: 558 MKDEEGFYYPHNVDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLAN 617
           MKDEEGFYYPHNVDFRGRAYP+HP+LNHL SDLCRG+LEF EG+PLGKSGL WLKIH+AN
Sbjct: 550 MKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIAN 609

Query: 618 LHAGGVEKLSYDRRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALK 677
           L+AGGV+KL+Y+ R+AF + HL++IFDS+  P+ G RWWL AEDPFQCLAAC+NLSEAL+
Sbjct: 610 LYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALR 669

Query: 678 SSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTI 737
           S  P   IS++PIHQDGSCNGLQHYAALGRD L A AVNLV GEKPADVY+EIAARV  I
Sbjct: 670 SPFPEAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARVLKI 729

Query: 738 MIRDANKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLI 797
           M +DA +DP T PNA+ AKL++DQVDRKLVKQTVMTSVYGVTY GAR+QIKKRL+E+G  
Sbjct: 730 MQQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTF 789

Query: 798 SDDRLLFRASCYAAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVV 857
            DD L F ASCYAAK+TL AL E+FEAAR I  W GDCAK+IA +N  V WTTPLGLPVV
Sbjct: 790 EDDSLTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIASENNAVCWTTPLGLPVV 849

Query: 858 QPYYKSERHLIRTSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAG 917
           QPY K  RHL++T+LQVL L RE + V  R+Q TAF PNF+HSLDGSHMM+TA+AC  AG
Sbjct: 850 QPYRKPGRHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAG 909

Query: 918 LRFAGVHDSFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERG 976
           L FAGVHDSFWTHACDVD MN ILREKFVELY  P+LE+LLE F+ ++P ++FP LPERG
Sbjct: 910 LSFAGVHDSFWTHACDVDVMNTILREKFVELYEKPILENLLESFQKSFPDISFPPLPERG 969

[Close]

BLAST of IVF0006141 vs. TAIR 10
Match: AT5G15700.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 1088.6 bits (2814), Expect = 0.0e+00
Identity = 533/843 (63.23%), Postives = 668/843 (79.24%), Query Frame = 0


Query: 137  KRKYNLLRRRQIKAETEAWEKMVKEYKELEREMCEKKLAPNLPYVKTLFLGWFEPLKQAI 196
            + K+  L RRQ+K ETE WE+   EY EL  +MCE+KLAPNLPYVK+LFLGWFEPL+ AI
Sbjct: 171  RTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCEQKLAPNLPYVKSLFLGWFEPLRDAI 230

Query: 197  EKEQKTQRSKKQKAAFAPHIELLSADKLAVIVMYKMMGLLMVAQQDCCVQVVQAAVQIGG 256
             K+Q+  R  K KA +A +++ L ADK++VI M+K+MG LM    + CV+VV AA  +G 
Sbjct: 231  AKDQELYRLGKSKATYAHYLDQLPADKISVITMHKLMGHLMTGGDNGCVKVVHAACTVGD 290

Query: 257  AIEQEVRIQSFLEKARSNQRTKVP--ADTECLSKEKEVLRKRVNGLIRRRRLKEVQKLLK 316
            AIEQE+RI +FL+K +     +     + E   KE++ LRK+VN LI++++L  V+K+L+
Sbjct: 291  AIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKKQKLSAVRKILQ 350

Query: 317  KEEF-KAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPPDVRPAFWHGFKPVAKTPG 376
              ++ K W  D +AK+GSRLIELL+ +A+IQ P  Q  +  PDVRPAF H FK VAK   
Sbjct: 351  SHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDNDLPDVRPAFVHTFK-VAK-GS 410

Query: 377  QNFVKKYGVIECDPIVLAGLDQTAKHMLIPYIPMLVPPKKWKGYDKGGHFFLPSYVMRTH 436
             N  +KYGVIECDP+V  GL+++ ++ ++PY+PMLVPP KW GYDKG + FL SY+M+TH
Sbjct: 411  MNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAYLFLTSYIMKTH 470

Query: 437  GSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRRVLSVVESLWAQGGNTAGLVDRKD 496
            G+ +Q++A+K+    Q+Q VFEALD LGSTKWRVN+RVL+VV+ +W+ GG  A +VDR D
Sbjct: 471  GAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSGGCVADMVDRSD 530

Query: 497  VPIPEK-QLGDLTETQEWRWSMKKAKKINQELHSQRCDVELKLSVARKMKDEEGFYYPHN 556
            VP+PEK    D    ++W+W +K AKK+N E HSQRCD ELKLSVARKMKDEE FYYPHN
Sbjct: 531  VPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKMKDEEAFYYPHN 590

Query: 557  VDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLKIHLANLHAGGVEKLSYD 616
            +DFRGRAYPM PHLNHL SDLCRGVLEFAEGRP+G SGL WLKIHLANL+AGGV+KLS D
Sbjct: 591  MDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANLYAGGVDKLSLD 650

Query: 617  RRLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNLSEALKSSAPHTVISYLP 676
             RLAF ++HLD+IFDSA  P+ G RWWL AEDPFQCLA C++L+EAL+S +P TV+S++P
Sbjct: 651  GRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEALRSPSPETVLSHIP 710

Query: 677  IHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAARVHTIMIRDANKDPTTN 736
            IHQDGSCNGLQHYAALGRDTL A AVNLVAGEKPADVYS IA RV  IM RDA++DP   
Sbjct: 711  IHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRVLDIMRRDADRDPEVF 770

Query: 737  PNASLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLEEKGLISDDRLLFRASCY 796
            P A  A+ L++QVDRKLVKQTVMTSVYGVTY+GAR+QIK+RL+E+    D++ +F A+CY
Sbjct: 771  PEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSDFGDEKEVFGAACY 830

Query: 797  AAKVTLAALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPLGLPVVQPYYKSERHLIR 856
            AAKVTLAA+ E+F+AAR IM W G+CAK+IA +N+ VRWTTPLGLPVVQPY++    L++
Sbjct: 831  AAKVTLAAIDEMFQAARAIMRWFGECAKIIASENETVRWTTPLGLPVVQPYHQMGTKLVK 890

Query: 857  TSLQVLALRREGNSVDVRKQRTAFPPNFVHSLDGSHMMLTALACRDAGLRFAGVHDSFWT 916
            TSLQ L+L+ E + V VR+QRTAFPPNF+HSLDGSHMM+TA+AC+ AG+ FAGVHDSFWT
Sbjct: 891  TSLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWT 950

Query: 917  HACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPERGDFDLQEVLRSPY 976
            HACDVD++N+ILREKFVELYS P+LE+LLE FE ++P L FP LPERGD DL+ VL SPY
Sbjct: 951  HACDVDKLNIILREKFVELYSQPILENLLESFEQSFPHLDFPPLPERGDLDLKVVLDSPY 1010

The following BLAST results are available for this feature:

BLAST of IVF0006141 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P69243	0.0e+00	69.05	DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RP...	[more]
P69242	0.0e+00	69.05	DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=...	[more]
Q8L6J1	0.0e+00	69.25	DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RP...	[more]
O24600	0.0e+00	69.07	DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8L6J3	0.0e+00	66.03	DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum...	[more]

BLAST of IVF0006141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BU26	0.0e+00	99.59	DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103493541 PE=3 SV=1	[more]
A0A5D3BDV2	0.0e+00	99.90	DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0LH38	0.0e+00	95.79	DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_2G036610 PE=3 SV=1	[more]
A0A6J1E061	0.0e+00	91.11	DNA-directed RNA polymerase OS=Momordica charantia OX=3673 GN=LOC111024704 PE=3 ...	[more]
A0A6J1I1C4	0.0e+00	89.29	DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111468549 PE=3 SV=...	[more]

BLAST of IVF0006141 vs. NCBI nr


Match Name	Identity	Description
XP_008452554.1	99.59	PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Cucumis melo]	[more]
KAA0056119.1	99.90	DNA-directed RNA polymerase 3 [Cucumis melo var. makuwa] >TYJ96398.1 DNA-directe...	[more]
XP_004144791.2	95.79	DNA-directed RNA polymerase 3, chloroplastic isoform X1 [Cucumis sativus] >KGN61...	[more]
XP_038889744.1	93.97	DNA-directed RNA polymerase 3, chloroplastic [Benincasa hispida]	[more]
XP_022158151.1	91.11	DNA-directed RNA polymerase 3, chloroplastic isoform X1 [Momordica charantia]	[more]

BLAST of IVF0006141 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24120.1	0.0e+00	69.07	DNA/RNA polymerases superfamily protein	[more]
AT2G24120.2	0.0e+00	68.10	DNA/RNA polymerases superfamily protein	[more]
AT1G68990.1	0.0e+00	63.09	male gametophyte defective 3	[more]
AT1G68990.2	0.0e+00	62.57	male gametophyte defective 3	[more]
AT5G15700.1	0.0e+00	63.23	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 145..168
None	No IPR available	GENE3D	1.10.287.280		coord: 584..662 e-value: 5.7E-27 score: 95.3
None	No IPR available	GENE3D	1.10.150.20		coord: 694..882 e-value: 8.3E-63 score: 214.1
None	No IPR available	PANTHER	PTHR10102:SF14	DNA-DIRECTED RNA POLYMERASE	coord: 21..975
IPR029262	DNA-directed RNA polymerase, N-terminal	SMART	SM01311	RPOL_N_2	coord: 145..462 e-value: 1.1E-114 score: 396.9
IPR029262	DNA-directed RNA polymerase, N-terminal	PFAM	PF14700	RPOL_N	coord: 146..462 e-value: 1.0E-75 score: 255.2
IPR024075	DNA-directed RNA polymerase, helix hairpin domain superfamily	GENE3D	1.10.287.260		coord: 463..544 e-value: 8.1E-8 score: 34.5
IPR002092	DNA-directed RNA polymerase, phage-type	PFAM	PF00940	RNA_pol	coord: 584..975 e-value: 1.0E-153 score: 512.3
IPR002092	DNA-directed RNA polymerase, phage-type	PANTHER	PTHR10102	DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL	coord: 21..975
IPR002092	DNA-directed RNA polymerase, phage-type	PROSITE	PS00489	RNA_POL_PHAGE_2	coord: 745..759
IPR002092	DNA-directed RNA polymerase, phage-type	PROSITE	PS00900	RNA_POL_PHAGE_1	coord: 672..683
IPR037159	DNA-directed RNA polymerase, N-terminal domain superfamily	GENE3D	1.10.1320.10		coord: 123..460 e-value: 3.5E-73 score: 248.5
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 134..975

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006141.2	IVF0006141.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006390	mitochondrial transcription
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0034245	mitochondrial DNA-directed RNA polymerase complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity