IVF0006081 (gene) Melon (IVF77) v1

Overview


Name	IVF0006081
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr05: 19751867 .. 19752073 (-)
RNA-Seq Expression	IVF0006081
Synteny	IVF0006081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGTTCATCGAGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGGCAGGCCTCGTCGAGTGCCTCGTGGAGTTAGTCAATGCTGATGGGTGGAGGTCCGACAACGGAACGTTTCAGCCCGAGTACCTCAATCAGCTGGCGAGAATGATAACCTTCAAGATCCCAGGTTCTAACGTCCATGCTTCAACGATCGATAATTGA

mRNA sequence

ATGGTAAGTTCATCGAGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGGCAGGCCTCGTCGAGTGCCTCGTGGAGTTAGTCAATGCTGATGGGTGGAGGTCCGACAACGGAACGTTTCAGCCCGAGTACCTCAATCAGCTGGCGAGAATGATAACCTTCAAGATCCCAGGTTCTAACGTCCATGCTTCAACGATCGATAATTGA

Coding sequence (CDS)

ATGGTAAGTTCATCGAGACTACCTAAGCACAATTGGACTAAAGAGGAAGAGGCAGGCCTCGTCGAGTGCCTCGTGGAGTTAGTCAATGCTGATGGGTGGAGGTCCGACAACGGAACGTTTCAGCCCGAGTACCTCAATCAGCTGGCGAGAATGATAACCTTCAAGATCCCAGGTTCTAACGTCCATGCTTCAACGATCGATAATTGA

Protein sequence

MVSSSRLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPGSNVHASTIDN

Homology

[Close]

BLAST of IVF0006081 vs. ExPASy TrEMBL
Match: A0A5A7UIE9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001660 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-28
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MVSSSRLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPGSN 60
          M SSSRLPKHNWTKEEEAGLVECLVELVNA GWRSDNGTF+P YLNQLARM+ FKIPGSN
Sbjct: 1  MASSSRLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPRYLNQLARMMAFKIPGSN 60

Query: 61 VHASTIDN 69
          VHASTID+
Sbjct: 61 VHASTIDS 68

[Close]

BLAST of IVF0006081 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MVSSSRLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPGSN 60
          M SSSRLPKH WTKEEEAGLVECLVELVNA GWRSDNGTF+P YLNQLARM+ FKIPGSN
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61 VHASTIDN 69
          +HASTID+
Sbjct: 61 IHASTIDS 68

[Close]

BLAST of IVF0006081 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MVSSSRLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPGSN 60
          M SSSRLPKH WTKEEEAGLVECLVELVNA GWRSDNGTF+P YLNQLARM+ FKIPGSN
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61 VHASTIDN 69
          +HASTID+
Sbjct: 61 IHASTIDS 68

[Close]

BLAST of IVF0006081 vs. ExPASy TrEMBL
Match: A0A5D3CBF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00350 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MVSSSRLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPGSN 60
          M SSSRLPKH WTKEEEAGLVECLVELVNA GWRSDNGTF+P YLNQLARM+ FKIPGSN
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61 VHASTIDN 69
          +HASTID+
Sbjct: 61 IHASTIDS 68

[Close]

BLAST of IVF0006081 vs. ExPASy TrEMBL
Match: A0A5A7U4P8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G004860 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MVSSSRLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPGSN 60
          M SSSRLPKH WTKEEEAGLVECLVELVNA GWRSDNGTF+P YLNQLARM+ FKIPGSN
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61 VHASTIDN 69
          +HASTID+
Sbjct: 61 IHASTIDS 68

[Close]

BLAST of IVF0006081 vs. NCBI nr
Match: KAA0063337.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 2.82e-36
Identity = 59/68 (86.76%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MVSSSRLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPGSN 60
          M SSSRLPKH WTKEEEAGLVECLVELVNA GWRSDNGTF+P YLNQLARM+ FKIPGSN
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61 VHASTIDN 68
          +HASTID+
Sbjct: 61 IHASTIDS 68

[Close]

BLAST of IVF0006081 vs. NCBI nr
Match: KAA0054347.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (329), Expect = 1.02e-35
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MVSSSRLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPGSN 60
          M SSSRLPKHNWTKEEEAGLVECLVELVNA GWRSDNGTF+P YLNQLARM+ FKIPGSN
Sbjct: 1  MASSSRLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPRYLNQLARMMAFKIPGSN 60

Query: 61 VHASTIDN 68
          VHASTID+
Sbjct: 61 VHASTIDS 68

[Close]

BLAST of IVF0006081 vs. NCBI nr
Match: TYJ99726.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (315), Expect = 2.20e-35
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MVSSSRLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPGSN 60
          M SSSRLPKH WTKEEEAGLVECLVELVNA GWRSDNGTF+P YLNQLARM+ FKIPG N
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 61 VHASTIDN 68
          +HASTID+
Sbjct: 61 IHASTIDS 68

[Close]

BLAST of IVF0006081 vs. NCBI nr
Match: KAA0053618.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (312), Expect = 4.67e-35
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MVSSSRLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPGSN 60
          M SSSRLPKH WTKEEEAGLVECLVELVNA GWRSDNGTF+P YLNQLARM+ FKI GSN
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKISGSN 60

Query: 61 VHASTIDN 68
          +HASTID+
Sbjct: 61 IHASTIDS 68

[Close]

BLAST of IVF0006081 vs. NCBI nr
Match: KAA0026116.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (310), Expect = 9.42e-35
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MVSSSRLPKHNWTKEEEAGLVECLVELVNADGWRSDNGTFQPEYLNQLARMITFKIPGSN 60
          M SSSRLPKH WTKEEEAGLVECLVELVN  GWRSDNGTF+P YLNQLARM+ FKIPG N
Sbjct: 1  MTSSSRLPKHTWTKEEEAGLVECLVELVNPGGWRSDNGTFRPGYLNQLARMMAFKIPGCN 60

Query: 61 VHASTIDN 68
          +HASTID+
Sbjct: 61 IHASTIDS 68

The following BLAST results are available for this feature:

BLAST of IVF0006081 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UIE9	1.0e-28	89.71	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UME4	1.1e-27	86.76	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DPR5	1.1e-27	86.76	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CBF7	1.1e-27	86.76	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4P8	1.1e-27	86.76	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0006081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063337.1	2.82e-36	86.76	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054347.1	1.02e-35	89.71	retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon p...	[more]
TYJ99726.1	2.20e-35	85.29	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0053618.1	4.67e-35	85.29	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0026116.1	9.42e-35	83.82	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0006081 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 4..63
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 4..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006081.2	IVF0006081.2	mRNA