IVF0006041 (gene) Melon (IVF77) v1

Overview
NameIVF0006041
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA repair protein UVH3 isoform X2
Locationchr01: 3729082 .. 3729249 (-)
RNA-Seq ExpressionIVF0006041
SyntenyIVF0006041
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGACGCTCGGCTTAGGCAAACGGTGGGTGGTCGTCGGTGCGGTGCATTCGGTGGCTGTCGACGAACGACTAGAACGCACGGATGGCTGCGGTGGGTGGTCGTCGAAGATGAGGGGCTGACGACTTTCGACGATCTTCGGTGGAGAAGTGAGGAGATGGGGTGA

mRNA sequence

ATGCTCGACGCTCGGCTTAGGCAAACGGTGGGTGGTCGTCGGTGCGGTGCATTCGGTGGCTGTCGACGAACGACTAGAACGCACGGATGGCTGCGGTGGGTGGTCGTCGAAGATGAGGGGCTGACGACTTTCGACGATCTTCGGTGGAGAAGTGAGGAGATGGGGTGA

Coding sequence (CDS)

ATGCTCGACGCTCGGCTTAGGCAAACGGTGGGTGGTCGTCGGTGCGGTGCATTCGGTGGCTGTCGACGAACGACTAGAACGCACGGATGGCTGCGGTGGGTGGTCGTCGAAGATGAGGGGCTGACGACTTTCGACGATCTTCGGTGGAGAAGTGAGGAGATGGGGTGA

Protein sequence

MLDARLRQTVGGRRCGAFGGCRRTTRTHGWLRWVVVEDEGLTTFDDLRWRSEEMG
Homology
[Close]
BLAST of IVF0006041 vs. ExPASy TrEMBL
Match: A0A5A7TXE5 (DNA repair protein UVH3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00420 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.9e-13
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 1  MLDARLRQTVGGRRCGAFGGCRRTTRTHGWLRWVVVEDEGL 42
          MLDARLRQ VGGRRCGAFGGCRRTTRTH  LRWVVVEDEGL
Sbjct: 1  MLDARLRQMVGGRRCGAFGGCRRTTRTHSLLRWVVVEDEGL 41

[Close]
BLAST of IVF0006041 vs. NCBI nr
Match: KAA0048293.1 (DNA repair protein UVH3 isoform X2 [Cucumis melo var. makuwa] >TYK14175.1 DNA repair protein UVH3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 1.71e-17
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 1  MLDARLRQTVGGRRCGAFGGCRRTTRTHGWLRWVVVEDEGL 41
          MLDARLRQ VGGRRCGAFGGCRRTTRTH  LRWVVVEDEGL
Sbjct: 1  MLDARLRQMVGGRRCGAFGGCRRTTRTHSLLRWVVVEDEGL 41

The following BLAST results are available for this feature:
BLAST of IVF0006041 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0006041 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TXE54.9e-1392.68DNA repair protein UVH3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
BLAST of IVF0006041 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048293.11.71e-1792.68DNA repair protein UVH3 isoform X2 [Cucumis melo var. makuwa] >TYK14175.1 DNA re... [more]
BLAST of IVF0006041 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0006041.1IVF0006041.1mRNA