IVF0006038 (gene) Melon (IVF77) v1

Overview


Name	IVF0006038
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Reverse transcriptase
Location	chr08: 8614519 .. 8614779 (-)
RNA-Seq Expression	IVF0006038
Synteny	IVF0006038

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTGGAGCAGTATGATGCGGAGTTTGACATGTTATCCCGCTTCGCTCCCGAGATGATAGCGACTGAGGCGGCCAGAGCTGATAAGTTTGTTAGAGGCCTCCGACTGGACATTCAGGGTTTGGTCCGAGCTTTCCGACCCGTTACTCATGCCGATGCACTGCGCCTGGCAGTGGATCTCAGTTTACAGGAGAGGGCTAACTCGTCTAAGACCGCTGGTAGAGGTTCGACATCGGGACAGAAGAGGAAGGCTGAGTAG

mRNA sequence

ATGACAGTGGAGCAGTATGATGCGGAGTTTGACATGTTATCCCGCTTCGCTCCCGAGATGATAGCGACTGAGGCGGCCAGAGCTGATAAGTTTGTTAGAGGCCTCCGACTGGACATTCAGGGTTTGGTCCGAGCTTTCCGACCCGTTACTCATGCCGATGCACTGCGCCTGGCAGTGGATCTCAGTTTACAGGAGAGGGCTAACTCGTCTAAGACCGCTGGTAGAGGTTCGACATCGGGACAGAAGAGGAAGGCTGAGTAG

Coding sequence (CDS)

ATGACAGTGGAGCAGTATGATGCGGAGTTTGACATGTTATCCCGCTTCGCTCCCGAGATGATAGCGACTGAGGCGGCCAGAGCTGATAAGTTTGTTAGAGGCCTCCGACTGGACATTCAGGGTTTGGTCCGAGCTTTCCGACCCGTTACTCATGCCGATGCACTGCGCCTGGCAGTGGATCTCAGTTTACAGGAGAGGGCTAACTCGTCTAAGACCGCTGGTAGAGGTTCGACATCGGGACAGAAGAGGAAGGCTGAGTAG

Protein sequence

MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAE

Homology

[Close]

BLAST of IVF0006038 vs. ExPASy TrEMBL
Match: A0A5A7UC07 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00040 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD 60
           MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD
Sbjct: 348 MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD 407

Query: 61  LSLQERANSSKTAGRGSTSGQKRKAE 87
           LSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 408 LSLQERANSSKTAGRGSTSGQKRKAE 433

[Close]

BLAST of IVF0006038 vs. ExPASy TrEMBL
Match: A0A5A7TXM6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold376G00490 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.8e-36
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD 60
           MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVD
Sbjct: 487 MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 546

Query: 61  LSLQERANSSKTAGRGSTSGQKRKAE 87
           LSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 547 LSLQERANSSKTAGRGSTSGQKRKAE 572

[Close]

BLAST of IVF0006038 vs. ExPASy TrEMBL
Match: A0A5A7UZ62 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002860 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.8e-36
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD 60
           MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVD
Sbjct: 43  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 102

Query: 61  LSLQERANSSKTAGRGSTSGQKRKAE 87
           LSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 103 LSLQERANSSKTAGRGSTSGQKRKAE 128

[Close]

BLAST of IVF0006038 vs. ExPASy TrEMBL
Match: A0A5A7V003 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1186G00140 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.8e-36
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD 60
          MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVD
Sbjct: 1  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 60

Query: 61 LSLQERANSSKTAGRGSTSGQKRKAE 87
          LSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 61 LSLQERANSSKTAGRGSTSGQKRKAE 86

[Close]

BLAST of IVF0006038 vs. ExPASy TrEMBL
Match: A0A5A7SQU8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00040 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.8e-36
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD 60
           MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVD
Sbjct: 557 MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 616

Query: 61  LSLQERANSSKTAGRGSTSGQKRKAE 87
           LSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 617 LSLQERANSSKTAGRGSTSGQKRKAE 642

[Close]

BLAST of IVF0006038 vs. NCBI nr
Match: TYK13745.1 (gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (405), Expect = 1.86e-48
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD 60
           MTV+QYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD
Sbjct: 43  MTVKQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD 102

Query: 61  LSLQERANSSKTAGRGSTSGQKRKAE 86
           LSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 103 LSLQERANSSKTAGRGSTSGQKRKAE 128

[Close]

BLAST of IVF0006038 vs. NCBI nr
Match: KAA0041026.1 (gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (401), Expect = 6.68e-48
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD 60
           MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVD
Sbjct: 43  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 102

Query: 61  LSLQERANSSKTAGRGSTSGQKRKAE 86
           LSLQERANSSKTAGRGSTSGQKRK E
Sbjct: 103 LSLQERANSSKTAGRGSTSGQKRKTE 128

[Close]

BLAST of IVF0006038 vs. NCBI nr
Match: KAA0032474.1 (gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (405), Expect = 4.14e-47
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD 60
           MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVD
Sbjct: 166 MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 225

Query: 61  LSLQERANSSKTAGRGSTSGQKRKAE 86
           LSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 226 LSLQERANSSKTAGRGSTSGQKRKAE 251

[Close]

BLAST of IVF0006038 vs. NCBI nr
Match: KAA0035392.1 (gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (400), Expect = 2.49e-46
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD 60
           MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVD
Sbjct: 72  MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 131

Query: 61  LSLQERANSSKTAGRGSTSGQKRKAE 86
           LSLQERANSSK AGRGSTSGQKRKAE
Sbjct: 132 LSLQERANSSKAAGRGSTSGQKRKAE 157

[Close]

BLAST of IVF0006038 vs. NCBI nr
Match: KAA0036632.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (401), Expect = 9.48e-46
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1   MTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPVTHADALRLAVD 60
           MTV+QYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRP THADALRLAVD
Sbjct: 212 MTVKQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVD 271

Query: 61  LSLQERANSSKTAGRGSTSGQKRKAE 86
           LSLQERANSSKTAGRGSTSGQKRKAE
Sbjct: 272 LSLQERANSSKTAGRGSTSGQKRKAE 297

The following BLAST results are available for this feature:

BLAST of IVF0006038 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0006038 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC07	1.3e-36	100.00	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7TXM6	3.8e-36	98.84	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37...	[more]
A0A5A7UZ62	3.8e-36	98.84	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33...	[more]
A0A5A7V003	3.8e-36	98.84	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11...	[more]
A0A5A7SQU8	3.8e-36	98.84	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of IVF0006038 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13745.1	1.86e-48	98.84	gag-protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0041026.1	6.68e-48	97.67	gag-protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0032474.1	4.14e-47	98.84	gag-protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0035392.1	2.49e-46	97.67	gag-protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0036632.1	9.48e-46	97.67	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0006038 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0006038.1	IVF0006038.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding