IVF0005905 (gene) Melon (IVF77) v1

Overview


Name	IVF0005905
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RRM domain-containing protein
Location	chr12: 25462963 .. 25465826 (-)
RNA-Seq Expression	IVF0005905
Synteny	IVF0005905

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGACTCTGAGAAAAAAGAGGTAGACTCCCCTATGATTATTACGGATTGCGAATTCCTCGAAATCAAACTGTTATAGCGGCTTTCGGGTGAAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCAAAACCCTTCTTTCTGCTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGATTTCAAAGCTTTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGAGTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGACTCTACGTCAGTGGTTGATTTTCTTTCTCTCAGTTGTCTATTTAGGCATAATTTGGCTAACTGTGTATGTGGAGACAATTTGGATTGCTTGAATCATTCCAACTTCATCTGTGCAGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGGTCGTTGACTAGTAGTTTTCTTGTGCATTCTGAACGTTCAATTTTGACTCAATTGTCGATATCTGGCCCTAACTATTATCATTTGTTGTTAAATTCAGTCAATCTGGTGATGGATAGAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAGTCTCAAAAAGCTATCGAAGGAATGCACGGCAAGGTAATTTACGTGCTCTATCTTTGCAATTGATGCTCTGTCTAATTTCTTCCAGATGAGTATAGTTTTCATGATGCATATTGCTTTCTTCTGTGTTATGCATTATCCTCTCAATCGCCAAAATCCACTTAAAATGCCCATTTCTCACTCACTATGATTTTGTAATGCATACGACTAGCCGTCTTGAATTATATCTGATTTACTCAGCATCTCTGGGTGAAGACGATAAATCCATCTATTAGGACTCTAAATAACTATAATCTACTCCAGAACTTGCGAGGTTTAATTCCTTTAGCTGAAGACAGTTTAGGCTTTACACAAAGGGACCATAAACCTTGAATTTCTCTGTAATTTTAGCTAGGGCATAGATATCTAGAAAGGAAAGCTGGATGCGATAGATTTAAAGTCGTATTTAGAGGACATAAAATAGCGTCCATCCAGATCCAGTTATTCTTAATCATTTCTTCCTTTCCGAGCTGCGGGACATTATAACTGTTATACCTTCAAACGGAAAAAATGAACTTCAACAGACGGTTAATAGCTGAGTGTTGATATAAGCATGAGGTATTCATAACTTTGTTTTATTGCATCGGTGCACGTGTATATCAGCAGATAGACTACTTGTCATGGTTAGATTAACATTGTTAGGAGGAACAAAGCCGATTAACTAAAGCTGCCCTCGCAATTTCTGTTTTACTACATACAAAACCTTGGATGGAACTCACTTGAGCTTTGTAAATGATCTAAATATTGAATAGGCATTGCCTTCTCCCCTGTCTCCTGAGCCAAGTGAAACTCACCAGCAGACAGTTACTAATTCCCTCCCTCATCCTTTCCTCCTTAAAGCTTTCATATTTGCGATCACTTACCATCGGATCTAACTAGTTCCAACTACGGCCAAGAACAAAAGTGTTTGAAGCATAACATTAGTGTTTTTAAAATTTCTCAACGATTTTTATCATTTGACTACATACTAAGAAAATTTTGAAATATGTTTTTGGGTAAATTTTCATCTTTCTGAAAGTGATTCCAACTCAATACCATTGGTGGTCATTCTCGCCTTTGCCCTTCGTATTATAAGTAAACTACGGGGGGAGACCTAGGGGGCCTATCAAATACTGCAACCAAAATATCAAATGTTTCTTGAATATTCGGCATGCTCCACGTAACTGATTATAATAAAATTCATTACAATTTAATATGGACTTGGAAGAGAATTAATTAGAGATGGTTAAACCCTAATTTATGGCTTGACTTGTCCTAGAACGATCCCTGTTCAATGAACTTGTTATATGAAAGGATTTATTTGTAATTAAAATTTCAAACGCAAATCACACTATACTCAATATATTCGCGTTTATAGCTAAAAATTTGTGTATCAGAGTGCATAGTACCACTGTTAAATATAAAGGCACTTTTCGGCCTCGAGGTTTCCTCCAACTTATAGTGACAACTATGTTTGTCGAAGTTAACGGTCAAAGAACTTATTCCCAGGTTTATTCGATGGATATACCCTCCCCACCTCTTCTCATCGGGAAGCATGAATTGATATGATATTCTCTTCTCAGATTCCATGGATAAAATTCGATGCTACCAAAAGAGAAAAAGGGTACTTTTGAAATCAAGCTTATAGCTGGGAGGATCTGATCTTATATCAACCAATTATAGGAGATTTTTATTTTTATTTATTTCTAATAAATAAAATGAAAAGGGAATCTATGATGATCTTGTGATCTTGTTGTCTTATCTTTTTTAGTGCATGTAATTTCAAGTACAGCAGCATCATGAACTAATAGGGGAAACTTTGGTTTAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAATTGCAAAACCCAGATCGGAGCTACGCCAAGGCCTTAAAGAAAACTCTAGCTAATGCATGCTAGTATATAGGCATCATTGTACTCTAAAGTTCAGATTCATTTTTATGAGAGCTGTAACATATTTTAGGGATATATATAACTAATGGTTGCGCTCTGCATTGTTATTGGTTTTCGAAAGCTTGGTCTGATTGTATGGTTATAATATAGTCAAAGTGTATTTAAGAGCAGTGTTCTGTCTTGAAATTAAATGATATTAATATCGAGG

mRNA sequence

TGGACTCTGAGAAAAAAGAGGTAGACTCCCCTATGATTATTACGGATTGCGAATTCCTCGAAATCAAACTGTTATAGCGGCTTTCGGGTGAAACGCCGGAGAAGACGAAAATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCAAAACCCTTCTTTCTGCTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGATTTCAAAGCTTTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGAGTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGACTCTACGTCAGTGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATCTGGTGATGGATAGAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAGTCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAATTGCAAAACCCAGATCGGAGCTACGCCAAGGCCTTAAAGAAAACTCTAGCTAATGCATGCTAGTATATAGGCATCATTGTACTCTAAAGTTCAGATTCATTTTTATGAGAGCTGTAACATATTTTAGGGATATATATAACTAATGGTTGCGCTCTGCATTGTTATTGGTTTTCGAAAGCTTGGTCTGATTGTATGGTTATAATATAGTCAAAGTGTATTTAAGAGCAGTGTTCTGTCTTGAAATTAAATGATATTAATATCGAGG

Coding sequence (CDS)

ATGACCGCCGGCTTGTCTTTCACGGTCACAGCTGCTCCAAAACCCTTCTTTCTGCTTCAGACTACTCATCACAACAATATCCGTTCAACCGAGACGCATATGCGATTTCAAAGCTTTCAATCCAAATTGGCTTACAGTTCTACGCCACTCCCCTTCTTCTCTGCGAGGAAGACTCAATCAATTTCAGAGTCACCGCTCTTTTCAGTGGCATGTGTCTCTTCTTCACCTTCTCCCAGAAGATACTCGCCTTCAACCAGACTCTACGTCAGTGGACTTTCATTCCGGACCACTGAAGAGAGCTTGCGAAATGCTTTCAAAAGCTTTGGCCAACTTGTAGAAGTCAATCTGGTGATGGATAGAGTAGCCAATAGACCAAGAGGATTTGCCTTCCTCCGTTATGCTTCAGAAGAGGAGTCTCAAAAAGCTATCGAAGGAATGCACGGCAAGTTTCTGGATGGCAGGGTGATTTTTGTGGAAATTGCAAAACCCAGATCGGAGCTACGCCAAGGCCTTAAAGAAAACTCTAGCTAA

Protein sequence

MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQSISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS

Homology

[Close]

BLAST of IVF0005905 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.5e-32
Identity = 71/116 (61.21%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 54  SARKTQSISESPLFSVACVSSSPSPRRYS--PSTRLYVSGLSFRTTEESLRNAFKSFGQL 113
           SAR+ + I    + S     SS SP   S  P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 114 VEVNLVMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSEL 168
           + +N+VMD+VANRP+GFAFLRY +EEE+ KAI+GMHGKFLDGRVIFVE AK RS++
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of IVF0005905 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.0e-21
Identity = 51/103 (49.51%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 73  SSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVANRPRGFAFLR 132
           S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V DRV+   +GF F+R
Sbjct: 44  SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVR 103

Query: 133 YASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENS 176
           YA+ E+S K I GM GKFLDG VIF E A+PR + +    +N+
Sbjct: 104 YATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of IVF0005905 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-17
Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 66  LFSVACVSSSPS---PRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVA 125
           L SV  ++SS S    +R   +++L++ GLSF TTE+ L  AF   GQ+VE  +VMDRV+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVS 71

Query: 126 NRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQG 171
           +R +GF F+ +AS +E+QKA+   +G+ L+GR IFV+ AK +  L  G
Sbjct: 72  DRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]

BLAST of IVF0005905 vs. ExPASy Swiss-Prot
Match: C0HFE5 (Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=ORRM1 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.7e-17
Identity = 40/83 (48.19%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 86  RLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVANRPRGFAFLRYASEEESQKAIEG 145
           RL+V+GLSF T+E++LR AF+ FG+LVEV ++MDR++ R +G+AF+ Y +EE    A++ 
Sbjct: 300 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDRISKRSKGYAFVEYTTEEAGGAALKA 359

Query: 146 MHGKFLDGRVIFVEIAKPRSELR 169
           M+G+ ++G +I V++AK RS  R
Sbjct: 360 MNGQIINGWMIVVDVAKTRSRDR 382

[Close]

BLAST of IVF0005905 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.7e-17
Identity = 42/96 (43.75%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 74  SSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVANRPRGFAFLRY 133
           SS + +    + RL+V+GLSF T+E++LR AF+ FG+LVEV ++MD+++ R +G+AF+ Y
Sbjct: 284 SSEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEY 343

Query: 134 ASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQ 170
            +EE    A++ M+G+ ++G +I V++AK RS  RQ
Sbjct: 344 TTEEAGGAALKAMNGQIINGWMIVVDVAKHRSRDRQ 379

[Close]

BLAST of IVF0005905 vs. ExPASy TrEMBL
Match: A0A1S3AYF6 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.4e-90
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 177
           VANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of IVF0005905 vs. ExPASy TrEMBL
Match: A0A0A0LQB8 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.1e-79
Identity = 160/180 (88.89%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSP----SPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSP    SPRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 177
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVE+AK RSELRQGL+ENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of IVF0005905 vs. ExPASy TrEMBL
Match: A0A5D3BIP7 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00650 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.8e-75
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFL 152
           VANRPRGFAFLRYASEEESQKAIEGMHGK L
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKAL 151

[Close]

BLAST of IVF0005905 vs. ExPASy TrEMBL
Match: A0A1S4E0R2 (glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484245 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.5e-75
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGK 150
           VANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]

BLAST of IVF0005905 vs. ExPASy TrEMBL
Match: A0A5A7SXY0 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00550 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.9e-74
Identity = 149/151 (98.68%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFL 152
           VANRPRGFAFLRYASEEESQKAIEGMHGK L
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKAL 151

[Close]

BLAST of IVF0005905 vs. NCBI nr
Match: XP_008439477.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 338 bits (868), Expect = 5.19e-117
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176
           VANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176

[Close]

BLAST of IVF0005905 vs. NCBI nr
Match: XP_011649648.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 302 bits (774), Expect = 1.28e-102
Identity = 160/180 (88.89%), Postives = 169/180 (93.89%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFF LQTTHH++I STET MR +S QSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFQLQTTHHSSISSTETRMRIRSIQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPS----PRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNL 120
           IS+S LFSVACVSSSPS    PRRY+PSTRLY+SGLSFRTTEESLRNAFKSFGQLVEVNL
Sbjct: 61  ISDSLLFSVACVSSSPSSSSSPRRYTPSTRLYISGLSFRTTEESLRNAFKSFGQLVEVNL 120

Query: 121 VMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176
           VMDR+ANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVE+AK RSELRQGL+ENSS
Sbjct: 121 VMDRLANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLEENSS 180

[Close]

BLAST of IVF0005905 vs. NCBI nr
Match: XP_038895072.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 297 bits (761), Expect = 1.14e-100
Identity = 155/178 (87.08%), Postives = 163/178 (91.57%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGL FTV AAPKPFF  Q THHNNIRSTETH R  S +S+LAYSSTPLPFFS RKT S
Sbjct: 1   MTAGLPFTVAAAPKPFFQFQITHHNNIRSTETHTRIHSIRSQLAYSSTPLPFFSVRKTHS 60

Query: 61  ISESPLFSVACVSSSPSP--RRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120
           IS+SPLFS+AC SSSPSP  RRY+PSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM
Sbjct: 61  ISDSPLFSLACASSSPSPSPRRYTPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVM 120

Query: 121 DRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 176
           D+VANRPRGFAFLRYA+EEESQKAIEGMHGKFLDGRVIFVE+AK RSELRQGLKENSS
Sbjct: 121 DKVANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKSRSELRQGLKENSS 178

[Close]

BLAST of IVF0005905 vs. NCBI nr
Match: XP_016901816.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 [Cucumis melo])

HSP 1 Score: 288 bits (736), Expect = 5.21e-97
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGK 149
           VANRPRGFAFLRYASEEESQKAIEGMHGK
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGK 149

[Close]

BLAST of IVF0005905 vs. NCBI nr
Match: TYJ98869.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 288 bits (738), Expect = 5.32e-97
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60
           MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS
Sbjct: 1   MTAGLSFTVTAAPKPFFLLQTTHHNNIRSTETHMRFQSFQSKLAYSSTPLPFFSARKTQS 60

Query: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120
           ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR
Sbjct: 61  ISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDR 120

Query: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKFL 151
           VANRPRGFAFLRYASEEESQKAIEGMHGK L
Sbjct: 121 VANRPRGFAFLRYASEEESQKAIEGMHGKAL 151

[Close]

BLAST of IVF0005905 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 138.3 bits (347), Expect = 6.1e-33
Identity = 71/116 (61.21%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 54  SARKTQSISESPLFSVACVSSSPSPRRYS--PSTRLYVSGLSFRTTEESLRNAFKSFGQL 113
           SAR+ + I    + S     SS SP   S  P T+LYVSGLSFRTTE++LR+ F+ FG L
Sbjct: 44  SARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNL 103

Query: 114 VEVNLVMDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSEL 168
           + +N+VMD+VANRP+GFAFLRY +EEE+ KAI+GMHGKFLDGRVIFVE AK RS++
Sbjct: 104 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDM 159

[Close]

BLAST of IVF0005905 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 102.8 bits (255), Expect = 2.8e-22
Identity = 51/103 (49.51%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 73  SSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVANRPRGFAFLR 132
           S +P+  +  PST L+VSGLS RTT E LR AF  FG++ +  +V DRV+   +GF F+R
Sbjct: 44  SQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVR 103

Query: 133 YASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQGLKENS 176
           YA+ E+S K I GM GKFLDG VIF E A+PR + +    +N+
Sbjct: 104 YATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQNN 146

[Close]

BLAST of IVF0005905 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-19
Identity = 42/93 (45.16%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 84  STRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVANRPRGFAFLRYASEEESQKAI 143
           S +L+VS LS  TT++SLR  F  FGQ+ E  L+ D    RP+GF F+ + SE++++KA+
Sbjct: 6   SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65

Query: 144 EGMHGKFLDGRVIFVEIAKPRSELRQGLKENSS 177
           + + GK +DGR+IFVE+AK   E+R G+  N +
Sbjct: 66  KSLDGKIVDGRLIFVEVAKNAEEVRAGINSNKA 98

[Close]

BLAST of IVF0005905 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-18
Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 66  LFSVACVSSSPS---PRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLVMDRVA 125
           L SV  ++SS S    +R   +++L++ GLSF TTE+ L  AF   GQ+VE  +VMDRV+
Sbjct: 12  LKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVS 71

Query: 126 NRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELRQG 171
           +R +GF F+ +AS +E+QKA+   +G+ L+GR IFV+ AK +  L  G
Sbjct: 72  DRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGG 119

[Close]

BLAST of IVF0005905 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-18
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 58  TQSISESPLFSVACVSSSPSPRRYSPSTRLYVSGLSFRTTEESLRNAFKSFGQLVEVNLV 117
           + S+  SP   V   S+  SP       RL+VSGLS  TT E L++AF SFGQLV+  ++
Sbjct: 14  SSSLLSSPSLCVRRCSTLTSP-------RLFVSGLSRLTTNEKLQDAFASFGQLVDARVI 73

Query: 118 MDRVANRPRGFAFLRYASEEESQKAIEGMHGKFLDGRVIFVEIAKPRSELR 169
            DR + R +GF F+ YA+ E+++KA   M+ KFLDG VIFV+ A+PR   R
Sbjct: 74  TDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRR 117

The following BLAST results are available for this feature:

BLAST of IVF0005905 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX45	8.5e-32	61.21	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FIU6	4.0e-21	49.51	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FFZ6	1.6e-17	44.44	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
C0HFE5	2.7e-17	48.19	Organelle RRM domain-containing protein 1, chloroplastic OS=Zea mays OX=4577 GN=...	[more]
Q6YWP9	2.7e-17	43.75	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]

BLAST of IVF0005905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AYF6	1.4e-90	100.00	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 OS=Cucumis mel...	[more]
A0A0A0LQB8	1.1e-79	88.89	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G032430 PE=4 SV...	[more]
A0A5D3BIP7	3.8e-75	99.34	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S4E0R2	6.5e-75	100.00	glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 OS=Cucumis mel...	[more]
A0A5A7SXY0	1.9e-74	98.68	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]

BLAST of IVF0005905 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439477.1	5.19e-117	100.00	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Cu...	[more]
XP_011649648.1	1.28e-102	88.89	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Cucumis sat...	[more]
XP_038895072.1	1.14e-100	87.08	organelle RRM domain-containing protein 6, chloroplastic isoform X1 [Benincasa h...	[more]
XP_016901816.1	5.21e-97	100.00	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X2 [Cu...	[more]
TYJ98869.1	5.32e-97	99.34	glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0005905 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73530.1	6.1e-33	61.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	2.8e-22	49.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	1.3e-19	45.16	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	1.1e-18	44.44	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	2.5e-18	45.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 86..159 e-value: 1.0E-25 score: 101.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 87..156 e-value: 4.5E-19 score: 68.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 85..163 score: 19.757713
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 86..159 e-value: 4.5E-4 score: 29.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 32..172 e-value: 2.1E-30 score: 107.7
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 6..175
None	No IPR available	PANTHER	PTHR15241:SF328	RNA-BINDING PROTEIN 1	coord: 6..175
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 69..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005905.1	IVF0005905.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900871	chloroplast mRNA modification
biological_process	GO:0016554	cytidine to uridine editing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding