IVF0005842 (gene) Melon (IVF77) v1

Overview


Name	IVF0005842
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 23181893 .. 23182075 (+)
RNA-Seq Expression	IVF0005842
Synteny	IVF0005842

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCGAAACACCCAACTGCAACAATGGAACCTCAAGCTGCAAGGAGGGAGATTTGAAGGGATTTGATGAGAGAGAACACAAAACGAAGGAGAAAAGGGTTTCGCACGAACATCGGTTGAGGGAAAAACCTGAACACAGGTTGAAGACGATAAGGCAGGGGAGGGTTTCGACCGTTTGA

mRNA sequence

ATGGCAAGCGAAACACCCAACTGCAACAATGGAACCTCAAGCTGCAAGGAGGGAGATTTGAAGGGATTTGATGAGAGAGAACACAAAACGAAGGAGAAAAGGGTTTCGCACGAACATCGGTTGAGGGAAAAACCTGAACACAGGTTGAAGACGATAAGGCAGGGGAGGGTTTCGACCGTTTGA

Coding sequence (CDS)

ATGGCAAGCGAAACACCCAACTGCAACAATGGAACCTCAAGCTGCAAGGAGGGAGATTTGAAGGGATTTGATGAGAGAGAACACAAAACGAAGGAGAAAAGGGTTTCGCACGAACATCGGTTGAGGGAAAAACCTGAACACAGGTTGAAGACGATAAGGCAGGGGAGGGTTTCGACCGTTTGA

Protein sequence

MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV

Homology

[Close]

BLAST of IVF0005842 vs. ExPASy TrEMBL
Match: A0A5D3BMY6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00200 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.3e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV 60
          MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV
Sbjct: 1  MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV 60

[Close]

BLAST of IVF0005842 vs. ExPASy TrEMBL
Match: A0A5D3DUA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold7319G00130 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-16
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV 60
          MASETP+CNNGTSS KEGDL+GFDE E++TKEKRVSHE  LR KPEH LKTIRQGRVSTV
Sbjct: 1  MASETPSCNNGTSSDKEGDLRGFDEGENRTKEKRVSHEQGLRGKPEHGLKTIRQGRVSTV 60

[Close]

BLAST of IVF0005842 vs. ExPASy TrEMBL
Match: A0A5A7U0L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00090 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-15
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV 60
          MASETP+ NNGTSS KEGDL+ FDE EH+TK KRVSHEH LR KPEHRLKTIR GRVS V
Sbjct: 1  MASETPSRNNGTSSAKEGDLRRFDEGEHRTKGKRVSHEHGLRGKPEHRLKTIRHGRVSIV 60

[Close]

BLAST of IVF0005842 vs. ExPASy TrEMBL
Match: A0A5D3BPU2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00950 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV 60
          MASETP+ NNGTSS KEGDL+ FDE EH+TK KRVSHEH LR KPEHRLKTIR GRVS +
Sbjct: 1  MASETPSRNNGTSSAKEGDLRRFDEGEHRTKGKRVSHEHGLRGKPEHRLKTIRHGRVSII 60

[Close]

BLAST of IVF0005842 vs. ExPASy TrEMBL
Match: A0A5D3C0R8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00590 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.8e-15
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV 60
          MASETP+ NNGTSS KEGDL+GFD+ EH+TK KRVSHEH LR KPEH LKT RQGRVS V
Sbjct: 1  MASETPSPNNGTSSNKEGDLRGFDDGEHRTKGKRVSHEHGLRGKPEHGLKTTRQGRVSAV 60

[Close]

BLAST of IVF0005842 vs. NCBI nr
Match: KAA0048342.1 (hypothetical protein E6C27_scaffold264G00570 [Cucumis melo var. makuwa] >TYK01123.1 hypothetical protein E5676_scaffold612G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 6.59e-34
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV 60
          MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV
Sbjct: 1  MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV 60

[Close]

BLAST of IVF0005842 vs. NCBI nr
Match: TYK26895.1 (hypothetical protein E5676_scaffold7319G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 7.85e-24
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 1  MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV 60
          MASETP+CNNGTSS KEGDL+GFDE E++TKEKRVSHE  LR KPEH LKTIRQGRVSTV
Sbjct: 1  MASETPSCNNGTSSDKEGDLRGFDEGENRTKEKRVSHEQGLRGKPEHGLKTIRQGRVSTV 60

[Close]

BLAST of IVF0005842 vs. NCBI nr
Match: KAA0047776.1 (hypothetical protein E6C27_scaffold133G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 7.56e-22
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV 60
          MASETP+ NNGTSS KEGDL+ FDE EH+TK KRVSHEH LR KPEHRLKTIR GRVS V
Sbjct: 1  MASETPSRNNGTSSAKEGDLRRFDEGEHRTKGKRVSHEHGLRGKPEHRLKTIRHGRVSIV 60

[Close]

BLAST of IVF0005842 vs. NCBI nr
Match: TYK01078.1 (hypothetical protein E5676_scaffold264G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.07e-21
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV 60
          MASETP+ NNGTSS KEGDL+ FDE EH+TK KRVSHEH LR KPEHRLKTIR GRVS +
Sbjct: 1  MASETPSRNNGTSSAKEGDLRRFDEGEHRTKGKRVSHEHGLRGKPEHRLKTIRHGRVSII 60

[Close]

BLAST of IVF0005842 vs. NCBI nr
Match: TYK28137.1 (hypothetical protein E5676_scaffold289G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 3.08e-21
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1  MASETPNCNNGTSSCKEGDLKGFDEREHKTKEKRVSHEHRLREKPEHRLKTIRQGRVSTV 60
          MASETP+ NNGTSS KEGDL+G DEREH+TK KRV HEH LR KPE+ LKTIRQGRVS V
Sbjct: 1  MASETPSRNNGTSSSKEGDLRGLDEREHRTKGKRVLHEHELRGKPENGLKTIRQGRVSAV 60

The following BLAST results are available for this feature:

BLAST of IVF0005842 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005842 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BMY6	2.3e-24	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DUA4	1.0e-16	83.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U0L7	3.4e-15	80.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BPU2	4.4e-15	78.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C0R8	9.8e-15	78.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0005842 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048342.1	6.59e-34	100.00	hypothetical protein E6C27_scaffold264G00570 [Cucumis melo var. makuwa] >TYK0112...	[more]
TYK26895.1	7.85e-24	83.33	hypothetical protein E5676_scaffold7319G00130 [Cucumis melo var. makuwa]	[more]
KAA0047776.1	7.56e-22	80.00	hypothetical protein E6C27_scaffold133G00090 [Cucumis melo var. makuwa]	[more]
TYK01078.1	1.07e-21	78.33	hypothetical protein E5676_scaffold264G00950 [Cucumis melo var. makuwa]	[more]
TYK28137.1	3.08e-21	78.33	hypothetical protein E5676_scaffold289G00480 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0005842 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005842.1	IVF0005842.1	mRNA