IVF0005823 (gene) Melon (IVF77) v1

Overview


Name	IVF0005823
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr11: 9666040 .. 9666294 (-)
RNA-Seq Expression	IVF0005823
Synteny	IVF0005823

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGCTCAGGTTCACACAAACAGCTCGGGTGCTCGCGCAGGCGCGTGCGGCTCAGACTTTGCGTGCGTGGCTCGGACTTCGCGGCTGACGAATCGATGGAGGATTGGCTTGATGGTTGACGCAGTCGGGAAGACGACTAGTTTGGCGATAATCATTGCTTGGCGGACGACATGGTGGAAAACACCAGAATACGATGAAGGGGACGCGACGAACGCAAAGCAAAATCAGAGAAGGTTCAGTGACGCTGCTTGA

mRNA sequence

ATGCTGGCTCAGGTTCACACAAACAGCTCGGGTGCTCGCGCAGGCGCGTGCGGCTCAGACTTTGCGTGCGTGGCTCGGACTTCGCGGCTGACGAATCGATGGAGGATTGGCTTGATGGTTGACGCAGTCGGGAAGACGACTAGTTTGGCGATAATCATTGCTTGGCGGACGACATGGTGGAAAACACCAGAATACGATGAAGGGGACGCGACGAACGCAAAGCAAAATCAGAGAAGGTTCAGTGACGCTGCTTGA

Coding sequence (CDS)

ATGCTGGCTCAGGTTCACACAAACAGCTCGGGTGCTCGCGCAGGCGCGTGCGGCTCAGACTTTGCGTGCGTGGCTCGGACTTCGCGGCTGACGAATCGATGGAGGATTGGCTTGATGGTTGACGCAGTCGGGAAGACGACTAGTTTGGCGATAATCATTGCTTGGCGGACGACATGGTGGAAAACACCAGAATACGATGAAGGGGACGCGACGAACGCAAAGCAAAATCAGAGAAGGTTCAGTGACGCTGCTTGA

Protein sequence

MLAQVHTNSSGARAGACGSDFACVARTSRLTNRWRIGLMVDAVGKTTSLAIIIAWRTTWWKTPEYDEGDATNAKQNQRRFSDAA

Homology

[Close]

BLAST of IVF0005823 vs. ExPASy TrEMBL
Match: A0A5D3DKS9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00310 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.5e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MLAQVHTNSSGARAGACGSDFACVARTSRLTNRWRIGLMVDAVGKTTSLAIIIAWRTTWW 60
           MLAQVHTNSSGARAGACGSDFACVARTSRLTNRWRIGLMVDAVGKTTSLAIIIAWRTTWW
Sbjct: 166 MLAQVHTNSSGARAGACGSDFACVARTSRLTNRWRIGLMVDAVGKTTSLAIIIAWRTTWW 225

Query: 61  KTPEYDEGDATNAKQNQRRFSDAA 85
           KTPEYDEGDATNAKQNQRRFSDAA
Sbjct: 226 KTPEYDEGDATNAKQNQRRFSDAA 249

[Close]

BLAST of IVF0005823 vs. ExPASy TrEMBL
Match: A0A5A7UFZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1248G00100 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.8e-38
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1   MLAQVHTNSSGARAGACGSDFACVARTSRLTNRWRIGLMVDAVGKTTSLAIIIAWRTTWW 60
           MLAQVHTNSSGARAGA GSDFACVARTSRLTNRWRIGLMVDAVGKTTSLAIIIAWRTTWW
Sbjct: 204 MLAQVHTNSSGARAGARGSDFACVARTSRLTNRWRIGLMVDAVGKTTSLAIIIAWRTTWW 263

Query: 61  KTPEYDEGDATNAKQNQRRFSDA 84
           KTPEYDEGDATNAKQNQRRFSDA
Sbjct: 264 KTPEYDEGDATNAKQNQRRFSDA 286

[Close]

BLAST of IVF0005823 vs. NCBI nr
Match: TYK24225.1 (hypothetical protein E5676_scaffold27G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (446), Expect = 2.18e-53
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1   MLAQVHTNSSGARAGACGSDFACVARTSRLTNRWRIGLMVDAVGKTTSLAIIIAWRTTWW 60
           MLAQVHTNSSGARAGACGSDFACVARTSRLTNRWRIGLMVDAVGKTTSLAIIIAWRTTWW
Sbjct: 166 MLAQVHTNSSGARAGACGSDFACVARTSRLTNRWRIGLMVDAVGKTTSLAIIIAWRTTWW 225

Query: 61  KTPEYDEGDATNAKQNQRRFSDAA 84
           KTPEYDEGDATNAKQNQRRFSDAA
Sbjct: 226 KTPEYDEGDATNAKQNQRRFSDAA 249

[Close]

BLAST of IVF0005823 vs. NCBI nr
Match: KAA0053156.1 (hypothetical protein E6C27_scaffold1248G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (430), Expect = 1.68e-50
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0


Query: 1   MLAQVHTNSSGARAGACGSDFACVARTSRLTNRWRIGLMVDAVGKTTSLAIIIAWRTTWW 60
           MLAQVHTNSSGARAGA GSDFACVARTSRLTNRWRIGLMVDAVGKTTSLAIIIAWRTTWW
Sbjct: 204 MLAQVHTNSSGARAGARGSDFACVARTSRLTNRWRIGLMVDAVGKTTSLAIIIAWRTTWW 263

Query: 61  KTPEYDEGDATNAKQNQRRFSDA 83
           KTPEYDEGDATNAKQNQRRFSDA
Sbjct: 264 KTPEYDEGDATNAKQNQRRFSDA 286

The following BLAST results are available for this feature:

BLAST of IVF0005823 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005823 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DKS9	2.5e-40	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UFZ9	1.8e-38	98.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0005823 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK24225.1	2.18e-53	100.00	hypothetical protein E5676_scaffold27G00310 [Cucumis melo var. makuwa]	[more]
KAA0053156.1	1.68e-50	98.80	hypothetical protein E6C27_scaffold1248G00100 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0005823 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005823.1	IVF0005823.1	mRNA