IVF0005688 (gene) Melon (IVF77) v1

Overview


Name	IVF0005688
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Acetyl-CoA carboxylase 1-like
Location	chr04: 24640262 .. 24640432 (+)
RNA-Seq Expression	IVF0005688
Synteny	IVF0005688

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGAAAGGGGAAGGCCTTTAATAACACTAGAGTGAAGCATAGAGTGAAGCGGTCGATTAAGGTGCCCACGATTAGTAACAAGCTAGCAGATATGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCACACCCAAGGTATAAAAATATGA

mRNA sequence

ATGGTAGGAAAGGGGAAGGCCTTTAATAACACTAGAGTGAAGCATAGAGTGAAGCGGTCGATTAAGGTGCCCACGATTAGTAACAAGCTAGCAGATATGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCACACCCAAGGTATAAAAATATGA

Coding sequence (CDS)

ATGGTAGGAAAGGGGAAGGCCTTTAATAACACTAGAGTGAAGCATAGAGTGAAGCGGTCGATTAAGGTGCCCACGATTAGTAACAAGCTAGCAGATATGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCACACCCAAGGTATAAAAATATGA

Protein sequence

MVGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSRVLHTQGIKI

Homology

[Close]

BLAST of IVF0005688 vs. ExPASy TrEMBL
Match: A0A5A7TLF6 (Transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00590 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.3e-17
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSRVLHTQ 53
           ++ K KAFNNTRVKHRVKRSIKVPTISN+LADMMIIHGGNMAKSQSRVLHTQ
Sbjct: 141 LIRKEKAFNNTRVKHRVKRSIKVPTISNRLADMMIIHGGNMAKSQSRVLHTQ 192

[Close]

BLAST of IVF0005688 vs. ExPASy TrEMBL
Match: A0A5A7TKJ7 (Triacylglycerol lipase 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G007180 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.7e-17
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSRVLHTQ 53
           + GKGKAFNNTRVKHRVK SIKVPTISNKLADMMIIHGGNMAKSQS+VL TQ
Sbjct: 299 ITGKGKAFNNTRVKHRVKWSIKVPTISNKLADMMIIHGGNMAKSQSKVLRTQ 350

[Close]

BLAST of IVF0005688 vs. ExPASy TrEMBL
Match: A0A5D3DTC4 (Heat stress transcription factor A-2d-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00780 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.2e-16
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSRV 49
           + GKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQS++
Sbjct: 302 ITGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSKI 349

[Close]

BLAST of IVF0005688 vs. ExPASy TrEMBL
Match: A0A5A7U8V0 (Acetyl-CoA carboxylase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00940 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.0e-15
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSRV 49
           + GKGKAFNNTRVKHRVK SIKVPTISNKLADMMIIHGGNMAKSQS++
Sbjct: 118 VTGKGKAFNNTRVKHRVKWSIKVPTISNKLADMMIIHGGNMAKSQSKI 165

[Close]

BLAST of IVF0005688 vs. ExPASy TrEMBL
Match: A0A5A7UHW8 (Triacylglycerol lipase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G00080 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSRV 49
           + GKGKAFNNTRVKHRVKR IKVPTISNKL D+MIIHGGNMAKSQS++
Sbjct: 224 ITGKGKAFNNTRVKHRVKRYIKVPTISNKLVDVMIIHGGNMAKSQSKI 271

[Close]

BLAST of IVF0005688 vs. NCBI nr
Match: KAA0042275.1 (transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 2.45e-22
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSRVLHTQ 52
           ++ K KAFNNTRVKHRVKRSIKVPTISN+LADMMIIHGGNMAKSQSRVLHTQ
Sbjct: 141 LIRKEKAFNNTRVKHRVKRSIKVPTISNRLADMMIIHGGNMAKSQSRVLHTQ 192

[Close]

BLAST of IVF0005688 vs. NCBI nr
Match: KAA0042207.1 (triacylglycerol lipase 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 2.43e-21
Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSRVLHTQ 52
           + GKGKAFNNTRVKHRVK SIKVPTISNKLADMMIIHGGNMAKSQS+VL TQ
Sbjct: 299 ITGKGKAFNNTRVKHRVKWSIKVPTISNKLADMMIIHGGNMAKSQSKVLRTQ 350

[Close]

BLAST of IVF0005688 vs. NCBI nr
Match: KAA0051708.1 (acetyl-CoA carboxylase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 1.82e-20
Identity = 43/48 (89.58%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSRV 48
           + GKGKAFNNTRVKHRVK SIKVPTISNKLADMMIIHGGNMAKSQS++
Sbjct: 118 VTGKGKAFNNTRVKHRVKWSIKVPTISNKLADMMIIHGGNMAKSQSKI 165

[Close]

BLAST of IVF0005688 vs. NCBI nr
Match: TYK26778.1 (heat stress transcription factor A-2d-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 2.65e-20
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSRV 48
           + GKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQS++
Sbjct: 302 ITGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSKI 349

[Close]

BLAST of IVF0005688 vs. NCBI nr
Match: KAA0054890.1 (triacylglycerol lipase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.09e-18
Identity = 41/48 (85.42%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MVGKGKAFNNTRVKHRVKRSIKVPTISNKLADMMIIHGGNMAKSQSRV 48
           + GKGKAFNNTRVKHRVKR IKVPTISNKL D+MIIHGGNMAKSQS++
Sbjct: 224 ITGKGKAFNNTRVKHRVKRYIKVPTISNKLVDVMIIHGGNMAKSQSKI 271

The following BLAST results are available for this feature:

BLAST of IVF0005688 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005688 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLF6	3.3e-17	90.38	Transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 OS=Cucumis melo var. ...	[more]
A0A5A7TKJ7	9.7e-17	90.38	Triacylglycerol lipase 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3DTC4	8.2e-16	91.67	Heat stress transcription factor A-2d-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7U8V0	7.0e-15	89.58	Acetyl-CoA carboxylase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UHW8	3.5e-14	85.42	Triacylglycerol lipase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of IVF0005688 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042275.1	2.45e-22	90.38	transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Cucumis melo var. ma...	[more]
KAA0042207.1	2.43e-21	90.38	triacylglycerol lipase 1 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0051708.1	1.82e-20	89.58	acetyl-CoA carboxylase 1-like [Cucumis melo var. makuwa]	[more]
TYK26778.1	2.65e-20	91.67	heat stress transcription factor A-2d-like [Cucumis melo var. makuwa]	[more]
KAA0054890.1	1.09e-18	85.42	triacylglycerol lipase 1-like [Cucumis melo var. makuwa]	[more]

BLAST of IVF0005688 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018872	Zn-cluster domain	PFAM	PF10533	Plant_zn_clust	coord: 12..32 e-value: 2.7E-7 score: 30.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005688.1	IVF0005688.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
molecular_function	GO:0003989	acetyl-CoA carboxylase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003714	transcription corepressor activity