IVF0005650 (gene) Melon (IVF77) v1

Overview


Name	IVF0005650
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CACTA en-spm transposon protein
Location	chr10: 16683716 .. 16683965 (-)
RNA-Seq Expression	IVF0005650
Synteny	IVF0005650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAAAAACGTCAGAAGATATCATTCCCGATGCTACGATATGAGTCGACAAAAAAGACGTCGGGAGAGGTATTCCCAAAATCGGTGGTTTCGTCGCAAAAAACGGCATCGGGAGAGGTATTTTCGATGCCGTCAACGTTGTCGGGAAACACGACGCCGGTAGAGGCATTCCTGACATCGTGTTGTTCACGTGTCGGAAGTGCCACTCCCGACTCAGGTTTCCCAACGTAGGGTCCGACGTCACGTAA

mRNA sequence

ATGCACAAAAACGTCAGAAGATATCATTCCCGATGCTACGATATGAGTCGACAAAAAAGACGTCGGGAGAGGTATTCCCAAAATCGAGGTATTTTCGATGCCGTCAACGTTGTCGGGAAACACGACGCCGGTAGAGGCATTCCTGACATCGTGTTGTTCACGTGTCGGAAGTGCCACTCCCGACTCAGGTTTCCCAACGTAGGGTCCGACGTCACGTAA

Coding sequence (CDS)

ATGCACAAAAACGTCAGAAGATATCATTCCCGATGCTACGATATGAGTCGACAAAAAAGACGTCGGGAGAGGTATTCCCAAAATCGAGGTATTTTCGATGCCGTCAACGTTGTCGGGAAACACGACGCCGGTAGAGGCATTCCTGACATCGTGTTGTTCACGTGTCGGAAGTGCCACTCCCGACTCAGGTTTCCCAACGTAGGGTCCGACGTCACGTAA

Protein sequence

MHKNVRRYHSRCYDMSRQKRRRERYSQNRGIFDAVNVVGKHDAGRGIPDIVLFTCRKCHSRLRFPNVGSDVT

Homology

[Close]

BLAST of IVF0005650 vs. ExPASy TrEMBL
Match: A0A5A7SSC5 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00060 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.0e-07
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 26  SQNRGIFDAVNVVGKHDAGRGIPDIVLFTCRKCHSRLRFPN 67
           S  RGI DAV+VV KHD GRGIPD+VLF  RKC SRLRFP+
Sbjct: 429 SIGRGIPDAVDVVEKHDVGRGIPDVVLFMRRKCLSRLRFPD 469

[Close]

BLAST of IVF0005650 vs. NCBI nr
Match: KAA0032451.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ99895.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 8.89e-09
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 26  SQNRGIFDAVNVVGKHDAGRGIPDIVLFTCRKCHSRLRFPN 66
           S  RGI DAV+VV KHD GRGIPD+VLF  RKC SRLRFP+
Sbjct: 429 SIGRGIPDAVDVVEKHDVGRGIPDVVLFMRRKCLSRLRFPD 469

The following BLAST results are available for this feature:

BLAST of IVF0005650 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSC5	4.0e-07	73.17	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of IVF0005650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032451.1	8.89e-09	73.17	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ99895.1 CACTA en-...	[more]

BLAST of IVF0005650 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005650.2	IVF0005650.2	mRNA