IVF0005565 (gene) Melon (IVF77) v1

Overview


Name	IVF0005565
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribosomal protein L18ae family
Location	chr05: 26570956 .. 26573029 (+)
RNA-Seq Expression	IVF0005565
Synteny	IVF0005565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTCGGGGAACTGCCGCTTCCTTTGTGGATGATGACAAGACGGCGATTGTATCCACGATCTAGCTTTCTTTTGGTTACGACTGGGTTTGGAGTTTCAGATTTTTGGTAGCTGAAGAAGTCACTAATTCTATTATTTTCTCTTTCTGCTGAGAATTATCTACTTATCTTTTATTCTTGACTTTGGGGTGGGAGTATGACTACGATTCATGAAGTGTAATTTTGGTCAAGCTAGGTTGCCTATTTATCCGACGGCTTTTGGAAGATTGAAAAGTTCCATAAAGTCGTGCTGCTCAACTGAACTAGTGTTTTATTAACATGAGGTCTAATGAACTAATTGGTATAAGAATATTGGATTGTTTAGAGCTATTTGGAATGTAAATACCAAACTTAGGTAAATTTTCAATCCATTTCAATCTTCTGTTTGCCGCATTTGAAGAATATATAGCTGTCTTGTCGGGTGTCTTTTGATTATATCCTTCCGACTTCTGAGTAGATTTTGATCTTTGACACAGGTTAACAAAGTGGATACTGCGAATTCGAAGAGTTCATACTTTCATAAACACCAGCTTCAGCATGGATCCAAGTAACTTAATTCTTCTTATAACTTGGGTTGCTCGGTGGGGGCTTAATCTAAAATTTAAAAAGAAGAAAAGAAAAGAAAAAGGCATGACTATGTATATTGGGTGCATTAGATGATTTTATTTGTGAGTTTGTAGCATGGTTTTAGTTAAGTAATTTCTTTGATCTTGAGATTCTTTAGGTGTCTTGGACATTCATACATGCCTATACACATTTTTATGCTTTCACTGCATGGTTATACTTTTTATTGAAGAATGTGGTCACATTCGGAATTTTAAGCTTGTTAATTTAGTGTCTGTCCTTTTATGATACACTTTTGCAGTCTTCGTCAAACCAATAATACACATCGAACTGTAAATAGATTTTACAAAATAGTTGGAACTATTACTTGAGTTGTGAACATGTTTTGTGGATGTTACAGATGGAAAAATGGACCAGACGGTGCAATTGGTGAAATCAGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAAGGTAAGTCAGGAATAAAAAGAAACATTTATGATTGGGATTTTTTATGATATATGATGCATATATTATTACCATGTATTGGTGGCTCTAGAATGAAATTATTTTTCGAAAATAAGAAAAGGAATGAAATTAGTTGAACCATTTTCAAAATGCCTTTATATTATAATGGACGCATTGCCACGCCACATTACTGTGGAATTTCTGGAATCGATAGGGGTTTCGTCTTTTATTGTTCCATTACGAGGGAAGGTTGAGATGATACTTAATAGCGTCATTTTCATTGCTACTCGTTTTTAACACTTCTTTGACGGTGTATGTTCTTAATGGTAGGATTTTATCAGTCTGGTAGTCCATTTTCTTTGTACTTATCTATGAATTACAGAAATCTCTTAAGATTTTCATATCGTTTTCAATTGAAGATGTTGATTACAAGTGTCTTTTGCTTGTATATTCATCTATGCTCAAAATGGTTGATAATACACCTAGGCCAAGGAAAAGATGCTCCAGACCACATAAGGAGCAAATACACGCTTCTCAGAGATGTAGAGGATTCTCAAGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGCGGCATAGGATGGTTTTCGTGAGTATTATGAAACTCTCGTGTACATACATTTCATGGAACGTCTATCTTTGCTTACATCCAGTTTTTCGAGTTTCCTAATCTTACCTTTGTATCTGTCTTTCCATTCAGTTTCCTCCTGGGGTTTTTTTTCCCACTAATGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGGGAACGTGCTGGATTAGCTGCGTCTGCCATTGCTGTAAGTGACTCCTTTCATTATGAGTTGTTTGTTGAATATGATCGAGTTTTCTGAAGAAGCAAAAAATGTTGATATGTTGCAGGCACTTGCATGTTCGATCATCTTGTTAATTGTGGTAGCTGTTCTTCTATGA

mRNA sequence

ATGGATATTCGGGGAACTGCCGCTTCCTTTGTGGATGATGACAAGACGGCGATTTGTAATTTTGGTCAAGCTAGGTTGCCTATTTATCCGACGGCTTTTGGAAGATTGAAAAGTTCCATAAAGTTAACAAAGTGGATACTGCGAATTCGAAGAGTTCATACTTTCATAAACACCAGCTTCAGCATGGATCCAAATGGAAAAATGGACCAGACGGTGCAATTGGTGAAATCAGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTCCAGACCACATAAGGAGCAAATACACGCTTCTCAGAGATGTAGAGGATTCTCAAGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGCGGCATAGGATGGTTTTCTTTCCTCCTGGGGTTTTTTTTCCCACTAATGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGGGAACGTGCTGGATTAGCTGCGTCTGCCATTGCTGCACTTGCATGTTCGATCATCTTGTTAATTGTGGTAGCTGTTCTTCTATGA

Coding sequence (CDS)

ATGGATATTCGGGGAACTGCCGCTTCCTTTGTGGATGATGACAAGACGGCGATTTGTAATTTTGGTCAAGCTAGGTTGCCTATTTATCCGACGGCTTTTGGAAGATTGAAAAGTTCCATAAAGTTAACAAAGTGGATACTGCGAATTCGAAGAGTTCATACTTTCATAAACACCAGCTTCAGCATGGATCCAAATGGAAAAATGGACCAGACGGTGCAATTGGTGAAATCAGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTCCAGACCACATAAGGAGCAAATACACGCTTCTCAGAGATGTAGAGGATTCTCAAGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGCGGCATAGGATGGTTTTCTTTCCTCCTGGGGTTTTTTTTCCCACTAATGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGGGAACGTGCTGGATTAGCTGCGTCTGCCATTGCTGCACTTGCATGTTCGATCATCTTGTTAATTGTGGTAGCTGTTCTTCTATGA

Protein sequence

MDIRGTAASFVDDDKTAICNFGQARLPIYPTAFGRLKSSIKLTKWILRIRRVHTFINTSFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALACSIILLIVVAVLL

Homology

[Close]

BLAST of IVF0005565 vs. ExPASy TrEMBL
Match: A0A0A0LKM2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000300 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.5e-96
Identity = 179/194 (92.27%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MDIRGTAASFVDDDKTAICNFGQARLPIYPTAFGRLKSSIKLTKWILRIRRVHTFINTSF 60
           MDIRGT  SFVDDDKTAI +FGQARLPI+ TAFGRLKSSI+ TKWILRI RVH+ INT F
Sbjct: 1   MDIRGTVPSFVDDDKTAISSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGF 60

Query: 61  SMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDS 120
           SMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED+
Sbjct: 61  SMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDA 120

Query: 121 QVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAAL 180
           QVGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARRDPRERAGLAASAIAAL
Sbjct: 121 QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAAL 180

Query: 181 ACSIILLIVVAVLL 195
           ACSI+LLIVVAVLL
Sbjct: 181 ACSILLLIVVAVLL 194

[Close]

BLAST of IVF0005565 vs. ExPASy TrEMBL
Match: A0A1S3CAZ9 (uncharacterized protein LOC103498658 OS=Cucumis melo OX=3656 GN=LOC103498658 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.8e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 121
           MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 182 CSIILLIVVAVLL 195
           CSIILLIVVAVLL
Sbjct: 121 CSIILLIVVAVLL 133

[Close]

BLAST of IVF0005565 vs. ExPASy TrEMBL
Match: A0A5D3CGZ6 (60S ribosomal protein L18a-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001100 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.8e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 121
           MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 182 CSIILLIVVAVLL 195
           CSIILLIVVAVLL
Sbjct: 121 CSIILLIVVAVLL 133

[Close]

BLAST of IVF0005565 vs. ExPASy TrEMBL
Match: A0A6J1G4J6 (uncharacterized protein LOC111450686 OS=Cucurbita moschata OX=3662 GN=LOC111450686 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.4e-62
Identity = 121/133 (90.98%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 121
           MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQ
Sbjct: 1   MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN+RRDPRERAGLAAS+IAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWNSRRDPRERAGLAASSIAALA 120

Query: 182 CSIILLIVVAVLL 195
           CS+ILL+VVAV L
Sbjct: 121 CSVILLVVVAVRL 133

[Close]

BLAST of IVF0005565 vs. ExPASy TrEMBL
Match: A0A6J1KAT7 (uncharacterized protein LOC111493795 OS=Cucurbita maxima OX=3661 GN=LOC111493795 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.9e-62
Identity = 120/133 (90.23%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 121
           MDPN K+D TVQLVKSVSD+HLDLLRP+ARICSIFKGQGKDA DHIRSKYTLLRDVEDSQ
Sbjct: 1   MDPNAKIDPTVQLVKSVSDRHLDLLRPTARICSIFKGQGKDASDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN+RRDPRERAGLAAS+IAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWNSRRDPRERAGLAASSIAALA 120

Query: 182 CSIILLIVVAVLL 195
           CS+ILL+VVAV L
Sbjct: 121 CSVILLVVVAVHL 133

[Close]

BLAST of IVF0005565 vs. NCBI nr
Match: XP_011648592.1 (uncharacterized protein LOC101207093 isoform X1 [Cucumis sativus])

HSP 1 Score: 326 bits (836), Expect = 8.71e-112
Identity = 163/175 (93.14%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 20  NFGQARLPIYPTAFGRLKSSIKLTKWILRIRRVHTFINTSFSMDPNGKMDQTVQLVKSVS 79
           +FGQARLPI+ TAFGRLKSSI+ TKWILRI RVH+ INT FSMDPNGKMDQTVQLVKSVS
Sbjct: 4   SFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGFSMDPNGKMDQTVQLVKSVS 63

Query: 80  DKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWF 139
           DKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED+QVGLYDKPLPCFGCGIGWF
Sbjct: 64  DKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWF 123

Query: 140 SFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALACSIILLIVVAVLL 194
           SFLLGFFFPL+WYYATILYFWNARRDPRERAGLAASAIAALACSI+LLIVVAVLL
Sbjct: 124 SFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL 178

[Close]

BLAST of IVF0005565 vs. NCBI nr
Match: XP_008459564.1 (PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo] >XP_008459572.1 PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo] >KAA0061479.1 60S ribosomal protein L18a-1 [Cucumis melo var. makuwa] >TYK10795.1 60S ribosomal protein L18a-1 [Cucumis melo var. makuwa])

HSP 1 Score: 264 bits (675), Expect = 6.37e-88
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 121
           MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 182 CSIILLIVVAVLL 194
           CSIILLIVVAVLL
Sbjct: 121 CSIILLIVVAVLL 133

[Close]

BLAST of IVF0005565 vs. NCBI nr
Match: XP_004141063.1 (uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus] >KGN60545.2 hypothetical protein Csa_019181 [Cucumis sativus])

HSP 1 Score: 261 bits (667), Expect = 1.05e-86
Identity = 130/133 (97.74%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 121
           MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED+Q
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARRDPRERAGLAASAIAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 182 CSIILLIVVAVLL 194
           CSI+LLIVVAVLL
Sbjct: 121 CSILLLIVVAVLL 133

[Close]

BLAST of IVF0005565 vs. NCBI nr
Match: XP_038889607.1 (uncharacterized protein LOC120079478 [Benincasa hispida])

HSP 1 Score: 259 bits (662), Expect = 6.09e-86
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 121
           MDPNGK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQ
Sbjct: 1   MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 182 CSIILLIVVAVLL 194
           CSIILL+VVAVLL
Sbjct: 121 CSIILLVVVAVLL 133

[Close]

BLAST of IVF0005565 vs. NCBI nr
Match: XP_022946692.1 (uncharacterized protein LOC111450686 [Cucurbita moschata] >XP_022946693.1 uncharacterized protein LOC111450686 [Cucurbita moschata])

HSP 1 Score: 246 bits (627), Expect = 1.35e-80
Identity = 120/131 (91.60%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 121
           MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVEDSQ
Sbjct: 1   MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN+RRDPRERAGLAAS+IAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWNSRRDPRERAGLAASSIAALA 120

Query: 182 CSIILLIVVAV 192
           CS+ILL+VVAV
Sbjct: 121 CSVILLVVVAV 131

[Close]

BLAST of IVF0005565 vs. TAIR 10
Match: AT4G26060.1 (Ribosomal protein L18ae family )

HSP 1 Score: 145.6 bits (366), Expect = 4.2e-35
Identity = 74/123 (60.16%), Postives = 95/123 (77.24%), Query Frame = 0


Query: 69  DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQVGLYDKP 128
           D + +LVKSV+DKH  L+RP A+  S      KDA    + +YTL++DV++ + G+YDKP
Sbjct: 10  DGSAELVKSVADKHAGLVRPVAKYYSAV----KDAMVCGKGRYTLVKDVDEVENGVYDKP 69

Query: 129 LPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAIAALACSIILL 188
           LPCFGCGIGWFSFLLGF FP +WYYAT+LYF N  R+DPRERAGLAASAI A+  S++LL
Sbjct: 70  LPCFGCGIGWFSFLLGFVFPFLWYYATLLYFGNYYRKDPRERAGLAASAITAMGFSLLLL 128

Query: 189 IVV 191
           ++V
Sbjct: 130 VIV 128

[Close]

BLAST of IVF0005565 vs. TAIR 10
Match: AT5G57060.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-33
Identity = 72/134 (53.73%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 62  MDPNGKM---DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVE 121
           MD N K    +   +LVK ++D+H  L++ ++R  S      KDA    + +YTL++DV+
Sbjct: 1   MDENSKFVSGNGRTELVKFIADRHAKLMKQASRHYSAI----KDAMARGKKRYTLVKDVD 60

Query: 122 DSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRDPRERAGLAASAI 181
           D + G YDKPLPCFGCGIGWFSFLLGF FP +WYYA  LYF N  R+DPRERAGLAASAI
Sbjct: 61  DMETGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFGNYYRKDPRERAGLAASAI 120

Query: 182 AALACSIILLIVVA 192
            A+  S++LL++ A
Sbjct: 121 TAMGFSLVLLVIFA 130

[Close]

BLAST of IVF0005565 vs. TAIR 10
Match: AT5G57060.2 (BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-29
Identity = 60/92 (65.22%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 101 KDAPDHIRSKYTLLRDVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFW 160
           KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP +WYYA  LYF 
Sbjct: 12  KDAMARGKKRYTLVKDVDDMETGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFG 71

Query: 161 N-ARRDPRERAGLAASAIAALACSIILLIVVA 192
           N  R+DPRERAGLAASAI A+  S++LL++ A
Sbjct: 72  NYYRKDPRERAGLAASAITAMGFSLVLLVIFA 103

[Close]

BLAST of IVF0005565 vs. TAIR 10
Match: AT1G54217.2 (Ribosomal protein L18ae family )

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-22
Identity = 58/95 (61.05%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 102 DAPDHIRSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFW 161
           D  +  + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  
Sbjct: 5   DLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 64

Query: 162 N-ARRDPRERAGLAASAIAALACSIILLIVVAVLL 195
           +   RDPRER+GLAASAIAAL  S+ L+I V VL+
Sbjct: 65  SYYHRDPRERSGLAASAIAALIFSVALVITVLVLV 99

[Close]

BLAST of IVF0005565 vs. TAIR 10
Match: AT1G54217.1 (Ribosomal protein L18ae family )

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-22
Identity = 57/89 (64.04%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 108 RSKYTLLR-DVEDSQVGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWN-ARRD 167
           + KY L+R D EDS++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RD
Sbjct: 10  KGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLISYYHRD 69

Query: 168 PRERAGLAASAIAALACSIILLIVVAVLL 195
           PRER+GLAASAIAAL  S+ L+I V VL+
Sbjct: 70  PRERSGLAASAIAALIFSVALVITVLVLV 98

The following BLAST results are available for this feature:

BLAST of IVF0005565 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKM2	2.5e-96	92.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000300 PE=4 SV=1	[more]
A0A1S3CAZ9	3.8e-68	100.00	uncharacterized protein LOC103498658 OS=Cucumis melo OX=3656 GN=LOC103498658 PE=...	[more]
A0A5D3CGZ6	3.8e-68	100.00	60S ribosomal protein L18a-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1G4J6	2.4e-62	90.98	uncharacterized protein LOC111450686 OS=Cucurbita moschata OX=3662 GN=LOC1114506...	[more]
A0A6J1KAT7	6.9e-62	90.23	uncharacterized protein LOC111493795 OS=Cucurbita maxima OX=3661 GN=LOC111493795...	[more]

BLAST of IVF0005565 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648592.1	8.71e-112	93.14	uncharacterized protein LOC101207093 isoform X1 [Cucumis sativus]	[more]
XP_008459564.1	6.37e-88	100.00	PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo] >XP_008459572.1 P...	[more]
XP_004141063.1	1.05e-86	97.74	uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus] >KGN60545.2 hy...	[more]
XP_038889607.1	6.09e-86	97.74	uncharacterized protein LOC120079478 [Benincasa hispida]	[more]
XP_022946692.1	1.35e-80	91.60	uncharacterized protein LOC111450686 [Cucurbita moschata] >XP_022946693.1 unchar...	[more]

BLAST of IVF0005565 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26060.1	4.2e-35	60.16	Ribosomal protein L18ae family	[more]
AT5G57060.1	1.8e-33	53.73	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-...	[more]
AT5G57060.2	2.6e-29	65.22	BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR...	[more]
AT1G54217.2	1.1e-22	61.05	Ribosomal protein L18ae family	[more]
AT1G54217.1	3.1e-22	64.04	Ribosomal protein L18ae family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46666	60S RIBOSOMAL L18A-LIKE PROTEIN	coord: 69..193
None	No IPR available	PANTHER	PTHR46666:SF7	SUBFAMILY NOT NAMED	coord: 69..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005565.1	IVF0005565.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane