IVF0005552 (gene) Melon (IVF77) v1

Overview


Name	IVF0005552
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LINE-1 reverse transcriptase like
Location	chr11: 5161076 .. 5161288 (+)
RNA-Seq Expression	IVF0005552
Synteny	IVF0005552

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCTTCCAAGGTGAAAGATTTCAGGCCGATAAGTCTCACTACTTTGTCTTATAAGCTGGTGGCAAAAGTATTGGCTGAAAGACTTAAGAAGATTGTTCCAAGCATTATTGATCCTCCTCAAAGTGCCGTTTTAAAAGGAAGGCAAATTCTAGACCCCATTCTCATTGCCAACGAAGTGGTGGAAGAATACAGAGGAAAAAGAAGATAG

mRNA sequence

ATGGATGCTTCCAAGGTGAAAGATTTCAGGCCGATAAGTCTCACTACTTTGTCTTATAAGCTGGTGGCAAAAGTATTGGCTGAAAGACTTAAGAAGATTGTTCCAAGCATTATTGATCCTCCTCAAAGTGCCGTTTTAAAAGGAAGGCAAATTCTAGACCCCATTCTCATTGCCAACGAAGTGGTGGAAGAATACAGAGGAAAAAGAAGATAG

Coding sequence (CDS)

ATGGATGCTTCCAAGGTGAAAGATTTCAGGCCGATAAGTCTCACTACTTTGTCTTATAAGCTGGTGGCAAAAGTATTGGCTGAAAGACTTAAGAAGATTGTTCCAAGCATTATTGATCCTCCTCAAAGTGCCGTTTTAAAAGGAAGGCAAATTCTAGACCCCATTCTCATTGCCAACGAAGTGGTGGAAGAATACAGAGGAAAAAGAAGATAG

Protein sequence

MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEYRGKRR

Homology

[Close]

BLAST of IVF0005552 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.3e-06
Identity = 22/61 (36.07%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 2   DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEV 61
           D   +K++RP+SL +  YK+VAK ++ RLK ++  +I P QS  + GR I D + +  ++
Sbjct: 518 DLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDL 577

Query: 62  V 63
           +
Sbjct: 578 L 578

[Close]

BLAST of IVF0005552 vs. ExPASy TrEMBL
Match: A0A5D3CPR1 (Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00080 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.4e-28
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANE 60
          MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANE
Sbjct: 1  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANE 60

Query: 61 VVEEYRGKRR 71
          VVEEYRGKRR
Sbjct: 61 VVEEYRGKRR 70

[Close]

BLAST of IVF0005552 vs. ExPASy TrEMBL
Match: A0A5A7SRS6 (Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold223G00590 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.1e-28
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANE 60
          MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSA+LKGRQILDPILIANE
Sbjct: 1  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAILKGRQILDPILIANE 60

Query: 61 VVEEYRGKRR 71
          VVEEYRGKRR
Sbjct: 61 VVEEYRGKRR 70

[Close]

BLAST of IVF0005552 vs. ExPASy TrEMBL
Match: A0A5D3CSY0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00110 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-15
Identity = 45/68 (66.18%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 2   DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEV 61
           DA+ VKDFRPISLTTLSYK+VAKVLAE LK+++ SI+ P QSA ++GRQILD +LIAN+ 
Sbjct: 178 DATFVKDFRPISLTTLSYKMVAKVLAECLKQVMDSIVSPFQSAFIEGRQILDSVLIANKA 237

Query: 62  VEEYRGKR 70
           V++Y+ K+
Sbjct: 238 VKDYQAKK 245

[Close]

BLAST of IVF0005552 vs. ExPASy TrEMBL
Match: A0A5D3D1U8 (Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00730 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 41/65 (63.08%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 6   VKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEY 65
           +KDFRPISLTT++YK++AKVL +RLKK++  II P QSA ++GR+ILDPIL+AN +VEEY
Sbjct: 201 IKDFRPISLTTITYKVIAKVLVKRLKKVMLCIIAPSQSAFIEGRKILDPILVANLIVEEY 260

Query: 66  RGKRR 71
             K +
Sbjct: 261 MAKEK 265

[Close]

BLAST of IVF0005552 vs. ExPASy TrEMBL
Match: A0A5D3E0C0 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00520 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-14
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 2   DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEV 61
           D   VKDFR ISLT L+YK+VA VLA+RLK+++ SII P Q A +KGRQILD ILIANE 
Sbjct: 118 DVIHVKDFRLISLTALTYKVVANVLAKRLKQVMDSIIGPFQRAFIKGRQILDSILIANEA 177

Query: 62  VEEYRGKRR 71
           VE+YR K++
Sbjct: 178 VEDYRAKKK 186

[Close]

BLAST of IVF0005552 vs. NCBI nr
Match: TYK13535.1 (putative retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (334), Expect = 5.98e-39
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANE 60
          MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANE
Sbjct: 1  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANE 60

Query: 61 VVEEYRGKRR 70
          VVEEYRGKRR
Sbjct: 61 VVEEYRGKRR 70

[Close]

BLAST of IVF0005552 vs. NCBI nr
Match: KAA0032087.1 (putative retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 132 bits (333), Expect = 8.51e-39
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANE 60
          MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSA+LKGRQILDPILIANE
Sbjct: 1  MDASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAILKGRQILDPILIANE 60

Query: 61 VVEEYRGKRR 70
          VVEEYRGKRR
Sbjct: 61 VVEEYRGKRR 70

[Close]

BLAST of IVF0005552 vs. NCBI nr
Match: XP_038905468.1 (probable leucine-rich repeat receptor-like protein kinase At5g49770 isoform X1 [Benincasa hispida])

HSP 1 Score: 95.1 bits (235), Expect = 1.01e-20
Identity = 45/65 (69.23%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 6   VKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEVVEEY 65
           VKDFRPIS +T+ YK++AKVLAERLKK++PS+I P QSA ++GRQILDP+LIANE VE Y
Sbjct: 80  VKDFRPISPSTIIYKIIAKVLAERLKKVMPSLISPTQSAFIEGRQILDPVLIANEAVEHY 139

Query: 66  RGKRR 70
           R K++
Sbjct: 140 RSKKK 144

[Close]

BLAST of IVF0005552 vs. NCBI nr
Match: TYK14532.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 4.37e-19
Identity = 45/68 (66.18%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 2   DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEV 61
           DA+ VKDFRPISLTTLSYK+VAKVLAE LK+++ SI+ P QSA ++GRQILD +LIAN+ 
Sbjct: 178 DATFVKDFRPISLTTLSYKMVAKVLAECLKQVMDSIVSPFQSAFIEGRQILDSVLIANKA 237

Query: 62  VEEYRGKR 69
           V++Y+ K+
Sbjct: 238 VKDYQAKK 245

[Close]

BLAST of IVF0005552 vs. NCBI nr
Match: KAA0043278.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK29342.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.10e-18
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 2   DASKVKDFRPISLTTLSYKLVAKVLAERLKKIVPSIIDPPQSAVLKGRQILDPILIANEV 61
           D   VKDFR ISLT L+YK+VA VLA+RLK+++ SII P Q A +KGRQILD ILIANE 
Sbjct: 118 DVIHVKDFRLISLTALTYKVVANVLAKRLKQVMDSIIGPFQRAFIKGRQILDSILIANEA 177

Query: 62  VEEYRGKRR 70
           VE+YR K++
Sbjct: 178 VEDYRAKKK 186

The following BLAST results are available for this feature:

BLAST of IVF0005552 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P14381	9.3e-06	36.07	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV...	[more]

BLAST of IVF0005552 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CPR1	2.4e-28	100.00	Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SRS6	3.1e-28	98.57	Putative retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3CSY0	3.0e-15	66.18	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold55...	[more]
A0A5D3D1U8	3.3e-14	63.08	Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3E0C0	5.6e-14	65.22	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of IVF0005552 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13535.1	5.98e-39	100.00	putative retrotransposon [Cucumis melo var. makuwa]	[more]
KAA0032087.1	8.51e-39	98.57	putative retrotransposon [Cucumis melo var. makuwa]	[more]
XP_038905468.1	1.01e-20	69.23	probable leucine-rich repeat receptor-like protein kinase At5g49770 isoform X1 [...	[more]
TYK14532.1	4.37e-19	66.18	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0043278.1	1.10e-18	65.22	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK293...	[more]

BLAST of IVF0005552 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 7..61 e-value: 4.1E-9 score: 36.3
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 5..67
None	No IPR available	PANTHER	PTHR33116:SF33	OS01G0885550 PROTEIN	coord: 5..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005552.2	IVF0005552.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043229	intracellular organelle
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity