IVF0005493 (gene) Melon (IVF77) v1

Overview


Name	IVF0005493
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pro-like protein
Location	chr03: 13477329 .. 13477547 (-)
RNA-Seq Expression	IVF0005493
Synteny	IVF0005493

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTGAAAGATCAATTGGCAAAGATCTTAGAACTGCTCACTACTAGAAGAGGAAAGAGTGTTGCGGGGATTTCATCACAAGTGGAAGTAGATCTGAACCAGGTGCTAGAAGACATGCCTGCATACCCTTCAGGTTTTACTCCCAAAAGTCGTCTAGTCCTTGCATGA

mRNA sequence

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTGAAAGATCAATTGGCAAAGATCTTAGAACTGCTCACTACTAGAAGAGGAAAGAGTGTTGCGGGGATTTCATCACAAGTGGAAGTAGATCTGAACCAGGTGCTAGAAGACATGCCTGCATACCCTTCAGGTTTTACTCCCAAAAGTCGTCTAGTCCTTGCATGA

Coding sequence (CDS)

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAGTTCGTCAAGACGTTGAAGGATTGAAAGATCAATTGGCAAAGATCTTAGAACTGCTCACTACTAGAAGAGGAAAGAGTGTTGCGGGGATTTCATCACAAGTGGAAGTAGATCTGAACCAGGTGCTAGAAGACATGCCTGCATACCCTTCAGGTTTTACTCCCAAAAGTCGTCTAGTCCTTGCATGA

Protein sequence

MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYPSGFTPKSRLVLA

Homology

[Close]

BLAST of IVF0005493 vs. ExPASy TrEMBL
Match: A0A5A7U2N8 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00640 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.9e-30
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 SGFTPKSRLVLA 73
          SGFTPKSRLVLA
Sbjct: 61 SGFTPKSRLVLA 72

[Close]

BLAST of IVF0005493 vs. ExPASy TrEMBL
Match: A0A5A7SM69 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00240 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.6e-25
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQAVRQDVEGLKDQLAKILELLTT RGKSVAGISSQVEVDLNQVLEDMPAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 SGFTPK 67
           GFTP+
Sbjct: 61 QGFTPQ 66

[Close]

BLAST of IVF0005493 vs. ExPASy TrEMBL
Match: A0A1S4E3F0 (uncharacterized protein LOC107991868 OS=Cucumis melo OX=3656 GN=LOC107991868 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.6e-25
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQAVRQDVEGLKDQLAKILELLTT RGKSVAGISSQVEVDLNQVLEDMPAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 SGFTPK 67
           GFTP+
Sbjct: 61 QGFTPQ 66

[Close]

BLAST of IVF0005493 vs. ExPASy TrEMBL
Match: A0A5D3C562 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold718G00220 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.3e-25
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQAVRQDVEGLKDQLAKILELLTT RGKSVAGISSQVEVDLNQVLEDMPAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 SGFTPK 67
           GFTP+
Sbjct: 61 PGFTPQ 66

[Close]

BLAST of IVF0005493 vs. ExPASy TrEMBL
Match: A0A5D3CQI8 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00380 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.5e-25
Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 SGFT 65
           GFT
Sbjct: 61 PGFT 64

[Close]

BLAST of IVF0005493 vs. NCBI nr
Match: KAA0049590.1 (Gag-pro-like protein [Cucumis melo var. makuwa] >TYK15949.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 2.05e-40
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 SGFTPKSRLVLA 72
          SGFTPKSRLVLA
Sbjct: 61 SGFTPKSRLVLA 72

[Close]

BLAST of IVF0005493 vs. NCBI nr
Match: KAA0066597.1 (uncharacterized protein E6C27_scaffold979G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (301), Expect = 1.45e-33
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQA+RQDVEGLKDQLAKILELLTT RGKSVAGISSQVEVDLNQVLEDMPAYP
Sbjct: 1  MDEQTNDQVQAIRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 SGFTPK 66
           GFTP+
Sbjct: 61 LGFTPQ 66

[Close]

BLAST of IVF0005493 vs. NCBI nr
Match: XP_016902756.1 (PREDICTED: uncharacterized protein LOC107991868 [Cucumis melo] >KAA0025341.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (304), Expect = 3.24e-32
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQAVRQDVEGLKDQLAKILELLTT RGKSVAGISSQVEVDLNQVLEDMPAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 SGFTPK 66
           GFTP+
Sbjct: 61 QGFTPQ 66

[Close]

BLAST of IVF0005493 vs. NCBI nr
Match: TYK06464.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 4.58e-32
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTNDQVQAVRQDVEGLKDQLAKILELLTT RGKSVAGISSQVEVDLNQVLEDMPAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 SGFTPK 66
           GFTP+
Sbjct: 61 PGFTPQ 66

[Close]

BLAST of IVF0005493 vs. NCBI nr
Match: KAA0026272.1 (putative RNA-directed DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 115 bits (287), Expect = 1.48e-31
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTRRGKSVAGISSQVEVDLNQVLEDMPAYP 60
          MDEQTN QVQAV QDV+GLKDQLAKILELLTT RGKSVAGISSQVEVDLNQVLEDMPAYP
Sbjct: 1  MDEQTNGQVQAVHQDVKGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 SGFTPK 66
           GFTP+
Sbjct: 61 PGFTPQ 66

The following BLAST results are available for this feature:

BLAST of IVF0005493 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0005493 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2N8	9.9e-30	100.00	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G...	[more]
A0A5A7SM69	5.6e-25	95.45	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120...	[more]
A0A1S4E3F0	5.6e-25	95.45	uncharacterized protein LOC107991868 OS=Cucumis melo OX=3656 GN=LOC107991868 PE=...	[more]
A0A5D3C562	7.3e-25	95.45	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold718...	[more]
A0A5D3CQI8	9.5e-25	98.44	Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363...	[more]

BLAST of IVF0005493 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049590.1	2.05e-40	100.00	Gag-pro-like protein [Cucumis melo var. makuwa] >TYK15949.1 Gag-pro-like protein...	[more]
KAA0066597.1	1.45e-33	93.94	uncharacterized protein E6C27_scaffold979G00030 [Cucumis melo var. makuwa]	[more]
XP_016902756.1	3.24e-32	95.45	PREDICTED: uncharacterized protein LOC107991868 [Cucumis melo] >KAA0025341.1 Gag...	[more]
TYK06464.1	4.58e-32	95.45	Gag-pro-like protein [Cucumis melo var. makuwa]	[more]
KAA0026272.1	1.48e-31	90.91	putative RNA-directed DNA polymerase [Cucumis melo var. makuwa]	[more]

BLAST of IVF0005493 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0005493.1	IVF0005493.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003964	RNA-directed DNA polymerase activity