IVF0005478 (gene) Melon (IVF77) v1

Overview
NameIVF0005478
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr06: 10416739 .. 10416957 (+)
RNA-Seq ExpressionIVF0005478
SyntenyIVF0005478
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAAAAGATAGTAAGGCGACACGAAGAGAAACACGTAAGCTAAGATTCTATTACGTCAAGGGAGACAACGTGATAAGGGTAACTAGTGAGGAAGGCATTGCATTGGGGTCCAACGGTGAGGCATTTGGTAGGATGATGCAAGAAGAAATATATACTCCCAAGAGAATGAGGCGAGGAACTAAACGTCTTGTCAAGCGATATGACAACTTATTGTGA

mRNA sequence

ATGCGAAAAGATAGTAAGGCGACACGAAGAGAAACACGTAAGCTAAGATTCTATTACGTCAAGGGAGACAACGTGATAAGGGTAACTAGTGAGGAAGGCATTGCATTGGGGTCCAACGGTGAGGCATTTGGTAGGATGATGCAAGAAGAAATATATACTCCCAAGAGAATGAGGCGAGGAACTAAACGTCTTGTCAAGCGATATGACAACTTATTGTGA

Coding sequence (CDS)

ATGCGAAAAGATAGTAAGGCGACACGAAGAGAAACACGTAAGCTAAGATTCTATTACGTCAAGGGAGACAACGTGATAAGGGTAACTAGTGAGGAAGGCATTGCATTGGGGTCCAACGGTGAGGCATTTGGTAGGATGATGCAAGAAGAAATATATACTCCCAAGAGAATGAGGCGAGGAACTAAACGTCTTGTCAAGCGATATGACAACTTATTGTGA

Protein sequence

MRKDSKATRRETRKLRFYYVKGDNVIRVTSEEGIALGSNGEAFGRMMQEEIYTPKRMRRGTKRLVKRYDNLL
Homology
[Close]
BLAST of IVF0005478 vs. ExPASy TrEMBL
Match: A0A5A7TZA6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G00970 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.1e-10
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1  MRKDSKATRRETRKLRFYYVKGDNVIRVTSEEGIALGSNGEAFGRMMQEEIYTPKRMR 59
          M+++S  TRRE  + RFYYVK  NVIRV  E+GIAL +  EAFGR++ EE+YTPKR+R
Sbjct: 1  MQQESGVTRRERHRPRFYYVKVGNVIRVIGEKGIALSAKSEAFGRILPEEVYTPKRLR 58

[Close]
BLAST of IVF0005478 vs. NCBI nr
Match: KAA0046569.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.61e-13
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1  MRKDSKATRRETRKLRFYYVKGDNVIRVTSEEGIALGSNGEAFGRMMQEEIYTPKRMR 58
          M+++S  TRRE  + RFYYVK  NVIRV  E+GIAL +  EAFGR++ EE+YTPKR+R
Sbjct: 1  MQQESGVTRRERHRPRFYYVKVGNVIRVIGEKGIALSAKSEAFGRILPEEVYTPKRLR 58

The following BLAST results are available for this feature:
BLAST of IVF0005478 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0005478 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TZA65.1e-1060.34Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of IVF0005478 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046569.11.61e-1360.34ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of IVF0005478 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0005478.2IVF0005478.2mRNA